Wall clock time and date at job start Wed Apr 1 2020 03:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30847 * 125.89579 * 2 1 4 4 N 1.40088 * 108.20220 * 179.81605 * 3 2 1 5 5 H 0.96994 * 126.03866 * 180.22817 * 4 3 2 6 6 C 1.34952 * 107.92600 * 0.36476 * 4 3 2 7 7 C 1.50697 * 126.12420 * 179.90392 * 6 4 3 8 8 C 1.35316 * 107.74721 * 359.64132 * 6 4 3 9 9 C 1.50699 * 126.04241 * 180.25062 * 8 6 4 10 10 C 1.52995 * 109.47012 * 89.99660 * 9 8 6 11 11 H 1.09005 * 109.47586 * 305.00307 * 10 9 8 12 12 C 1.53004 * 109.47140 * 65.00481 * 10 9 8 13 13 C 1.50707 * 109.47110 * 185.00270 * 10 9 8 14 14 O 1.21277 * 119.99593 * 359.97438 * 13 10 9 15 15 N 1.34775 * 120.00187 * 180.02562 * 13 10 9 16 16 C 1.47287 * 136.54045 * 0.02562 * 15 13 10 17 17 C 1.54083 * 87.60732 * 151.36594 * 16 15 13 18 18 H 1.08994 * 115.04963 * 142.50332 * 17 16 15 19 19 C 1.53074 * 111.38894 * 273.97126 * 17 16 15 20 20 C 1.53147 * 109.21255 * 142.39401 * 19 17 16 21 21 N 1.46537 * 108.25393 * 301.58963 * 20 19 17 22 22 C 1.36937 * 119.73785 * 236.44669 * 21 20 19 23 23 H 1.07997 * 120.00146 * 150.86545 * 22 21 20 24 24 C 1.38820 * 119.99834 * 330.85785 * 22 21 20 25 25 N 1.31617 * 119.99833 * 158.23237 * 24 22 21 26 26 Si 1.86798 * 120.00057 * 338.23474 * 24 22 21 27 27 H 1.48498 * 109.47299 * 94.80125 * 26 24 22 28 28 H 1.48501 * 109.46907 * 214.80154 * 26 24 22 29 29 H 1.48499 * 109.47083 * 334.79825 * 26 24 22 30 30 C 1.45694 * 120.52257 * 56.42374 * 21 20 19 31 31 C 1.46463 * 136.54229 * 179.62038 * 15 13 10 32 32 H 1.09000 * 111.43658 * 96.38820 * 31 15 13 33 33 H 1.09006 * 109.46709 * 269.96032 * 1 2 3 34 34 H 1.09000 * 109.47196 * 29.95493 * 1 2 3 35 35 H 1.08996 * 109.47107 * 149.96016 * 1 2 3 36 36 H 1.09002 * 109.47405 * 269.68426 * 7 6 4 37 37 H 1.09002 * 109.47462 * 29.68935 * 7 6 4 38 38 H 1.09006 * 109.46676 * 149.68867 * 7 6 4 39 39 H 1.08999 * 109.47265 * 210.00027 * 9 8 6 40 40 H 1.09000 * 109.46832 * 329.99908 * 9 8 6 41 41 H 1.08992 * 109.47338 * 59.99647 * 12 10 9 42 42 H 1.09007 * 109.46781 * 180.02562 * 12 10 9 43 43 H 1.09005 * 109.46737 * 299.99363 * 12 10 9 44 44 H 1.08997 * 113.52671 * 266.04410 * 16 15 13 45 45 H 1.08998 * 113.53272 * 36.60837 * 16 15 13 46 46 H 1.09000 * 109.50961 * 262.31917 * 19 17 16 47 47 H 1.08995 * 109.51247 * 22.42165 * 19 17 16 48 48 H 1.09007 * 109.70303 * 61.28003 * 20 19 17 49 49 H 1.09001 * 109.70423 * 181.85239 * 20 19 17 50 50 H 0.96991 * 120.00237 * 180.02562 * 25 24 22 51 51 H 1.09003 * 108.79206 * 80.89673 * 30 21 20 52 52 H 1.08995 * 108.78886 * 199.22586 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6088 0.6342 0.0043 5 1 4.3908 1.2080 0.0083 6 6 3.6143 -0.7153 -0.0013 7 6 4.8351 -1.5987 -0.0015 8 6 2.3272 -1.1330 -0.0009 9 6 1.8600 -2.5657 -0.0007 10 6 1.7025 -3.0506 1.4418 11 1 2.6378 -2.8984 1.9806 12 6 0.5853 -2.2605 2.1263 13 6 1.3546 -4.5170 1.4438 14 8 1.2432 -5.1151 0.3947 15 7 1.1664 -5.1634 2.6113 16 6 1.2050 -4.8183 4.0427 17 6 0.1740 -5.9397 4.2746 18 1 0.3105 -6.5092 5.1938 19 6 -1.2561 -5.4351 4.0660 20 6 -2.0840 -6.5321 3.3903 21 7 -1.4432 -6.8722 2.1171 22 6 -2.1575 -6.7838 0.9522 23 1 -1.6513 -6.5647 0.0236 24 6 -3.5322 -6.9760 0.9647 25 7 -4.2735 -6.4901 -0.0083 26 14 -4.3301 -7.9242 2.3625 27 1 -4.8061 -6.9723 3.3980 28 1 -5.4813 -8.7025 1.8388 29 1 -3.3371 -8.8517 2.9616 30 6 -0.0519 -7.3033 2.0809 31 6 0.8242 -6.5246 3.0298 32 1 1.7154 -7.1011 3.2777 33 1 -0.3633 -0.0007 1.0277 34 1 -0.3633 0.8904 -0.5131 35 1 -0.3633 -0.8896 -0.5144 36 1 5.1291 -1.8121 -1.0293 37 1 5.6514 -1.0907 0.5119 38 1 4.6078 -2.5327 0.5126 39 1 0.9010 -2.6353 -0.5142 40 1 2.5933 -3.1871 -0.5148 41 1 -0.3500 -2.4127 1.5877 42 1 0.4734 -2.6057 3.1542 43 1 0.8369 -1.1999 2.1250 44 1 2.1702 -5.0111 4.5109 45 1 0.8218 -3.8214 4.2605 46 1 -1.6988 -5.1867 5.0306 47 1 -1.2404 -4.5478 3.4333 48 1 -2.1193 -7.4132 4.0310 49 1 -3.0956 -6.1694 3.2081 50 1 -5.2341 -6.6240 0.0006 51 1 -0.0048 -8.3601 2.3436 52 1 0.3285 -7.1768 1.0674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084841307.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:57 Heat of formation + Delta-G solvation = 71.271890 kcal Electronic energy + Delta-G solvation = -32435.065523 eV Core-core repulsion = 28437.027986 eV Total energy + Delta-G solvation = -3998.037537 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.45464 -41.97969 -39.52017 -37.26855 -36.11165 -34.31476 -33.91633 -32.68173 -32.38590 -30.49187 -29.51564 -28.74097 -28.18307 -26.84538 -25.37083 -25.20313 -23.75353 -22.68827 -21.22075 -20.94548 -20.00373 -19.21306 -18.69426 -18.27646 -17.62324 -17.18675 -16.97467 -16.77627 -16.09610 -15.87651 -15.52304 -15.28102 -14.96701 -14.77208 -14.66638 -14.37422 -14.30201 -14.19501 -13.99020 -13.80706 -13.68492 -13.50331 -13.39899 -13.21485 -13.17027 -12.87428 -12.81689 -12.70965 -12.56113 -12.53667 -12.36352 -12.04670 -11.97851 -11.87379 -11.50833 -11.41684 -11.36035 -11.12973 -10.68211 -10.38165 -10.19376 -9.48907 -9.31032 -8.83310 -8.14189 -5.46055 0.87558 1.30024 1.42446 1.53295 1.64312 1.84537 1.96398 2.07911 2.43384 3.06835 3.36504 3.45882 3.51239 3.71310 3.78447 3.91702 3.94180 4.02550 4.16406 4.22658 4.35442 4.36701 4.39888 4.46284 4.54374 4.57014 4.57229 4.64278 4.68299 4.70052 4.72638 4.74586 4.85505 4.91176 4.93259 4.98703 5.00087 5.06275 5.07691 5.12187 5.15509 5.18314 5.22828 5.28111 5.37937 5.40447 5.60714 5.70212 5.93583 6.16029 6.45544 6.73645 6.98736 7.02675 7.38694 7.70373 8.02653 9.06939 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003308 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.839899 B = 8463.279466 C = 9242.363333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.080 3.920 3 N -0.326 5.326 4 N -0.468 5.468 5 H 0.450 0.550 6 C 0.103 3.897 7 C -0.093 4.093 8 C -0.247 4.247 9 C -0.011 4.011 10 C -0.079 4.079 11 H 0.116 0.884 12 C -0.136 4.136 13 C 0.536 3.464 14 O -0.589 6.589 15 N -0.640 5.640 16 C 0.106 3.894 17 C -0.102 4.102 18 H 0.140 0.860 19 C -0.111 4.111 20 C 0.120 3.880 21 N -0.607 5.607 22 C -0.245 4.245 23 H 0.022 0.978 24 C -0.038 4.038 25 N -0.962 5.962 26 Si 0.959 3.041 27 H -0.268 1.268 28 H -0.313 1.313 29 H -0.256 1.256 30 C 0.142 3.858 31 C 0.115 3.885 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.123 0.877 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.043 0.957 48 H 0.044 0.956 49 H 0.044 0.956 50 H 0.261 0.739 51 H 0.030 0.970 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.594 11.620 13.429 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 N -0.150 5.150 4 N -0.178 5.178 5 H 0.297 0.703 6 C -0.026 4.026 7 C -0.151 4.151 8 C -0.259 4.259 9 C -0.050 4.050 10 C -0.100 4.100 11 H 0.134 0.866 12 C -0.193 4.193 13 C 0.327 3.673 14 O -0.469 6.469 15 N -0.375 5.375 16 C -0.015 4.015 17 C -0.121 4.121 18 H 0.158 0.842 19 C -0.150 4.150 20 C -0.004 4.004 21 N -0.332 5.332 22 C -0.375 4.375 23 H 0.040 0.960 24 C -0.232 4.232 25 N -0.608 5.608 26 Si 0.786 3.214 27 H -0.194 1.194 28 H -0.242 1.242 29 H -0.180 1.180 30 C 0.016 3.984 31 C 0.011 3.989 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.141 0.859 45 H 0.110 0.890 46 H 0.115 0.885 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.070 0.930 51 H 0.048 0.952 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 20.500 12.716 12.608 27.220 hybrid contribution -0.731 -1.135 -0.821 1.580 sum 19.769 11.582 11.787 25.766 Atomic orbital electron populations 1.20344 0.86563 1.03205 1.03747 1.22382 0.97350 0.90388 0.98503 1.77222 0.87644 1.22688 1.27436 1.46122 1.07023 1.05026 1.59624 0.70301 1.21271 0.97287 0.85112 0.98965 1.20614 0.91990 0.98008 1.04530 1.19638 0.92119 0.95302 1.18800 1.19449 1.00644 0.90409 0.94528 1.21142 1.01639 0.88672 0.98553 0.86608 1.21875 0.96436 1.00472 1.00543 1.20777 0.75465 0.89758 0.81323 1.90704 1.53399 1.70187 1.32598 1.49598 1.68633 1.12959 1.06318 1.23647 1.00223 0.99995 0.77680 1.22740 0.93804 0.97930 0.97649 0.84241 1.21756 0.94983 0.97594 1.00631 1.21307 0.95788 0.96747 0.86568 1.43827 1.08661 1.77942 1.02743 1.18679 0.90348 1.41020 0.87414 0.96029 1.26004 0.96658 1.00381 1.00184 1.70034 1.05377 1.47917 1.37463 0.85699 0.77052 0.79564 0.79035 1.19396 1.24215 1.18041 1.20308 0.83982 0.95602 0.98466 1.22357 0.97691 0.85477 0.93379 0.86963 0.89308 0.90418 0.91302 0.89234 0.88281 0.89505 0.93677 0.91504 0.94686 0.90746 0.90384 0.85917 0.88975 0.88499 0.93810 0.93825 0.93746 0.93045 0.95204 0.94855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.94 9.23 71.24 0.66 -1.28 16 2 C 0.08 2.06 6.26 43.10 0.27 2.33 16 3 N -0.33 -8.21 12.70 -47.38 -0.60 -8.82 16 4 N -0.47 -8.56 7.36 -48.00 -0.35 -8.91 16 5 H 0.45 4.93 8.96 -213.34 -1.91 3.01 16 6 C 0.10 1.94 7.21 41.40 0.30 2.23 16 7 C -0.09 -1.05 10.04 71.23 0.71 -0.33 16 8 C -0.25 -6.07 4.78 -20.14 -0.10 -6.16 16 9 C -0.01 -0.32 3.94 29.85 0.12 -0.20 16 10 C -0.08 -2.06 2.61 -11.54 -0.03 -2.09 16 11 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 12 C -0.14 -3.36 7.84 71.98 0.56 -2.79 16 13 C 0.54 18.83 7.34 87.66 0.64 19.47 16 14 O -0.59 -27.74 15.16 -3.02 -0.05 -27.78 16 15 N -0.64 -18.71 3.29 -867.26 -2.85 -21.56 16 16 C 0.11 1.83 7.39 81.10 0.60 2.43 16 17 C -0.10 -2.23 4.57 -10.69 -0.05 -2.28 16 18 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 19 C -0.11 -3.28 5.69 30.67 0.17 -3.10 16 20 C 0.12 4.94 4.17 86.42 0.36 5.30 16 21 N -0.61 -30.08 2.76 -707.80 -1.95 -32.03 16 22 C -0.24 -15.21 9.93 84.04 0.83 -14.37 16 23 H 0.02 1.58 8.01 -2.91 -0.02 1.56 16 24 C -0.04 -2.37 5.17 84.86 0.44 -1.93 16 25 N -0.96 -64.12 13.97 21.65 0.30 -63.82 16 26 Si 0.96 47.89 24.42 68.60 1.68 49.56 16 27 H -0.27 -12.30 6.70 99.48 0.67 -11.63 16 28 H -0.31 -15.96 7.11 99.48 0.71 -15.26 16 29 H -0.26 -12.04 6.74 99.48 0.67 -11.37 16 30 C 0.14 6.04 6.16 85.82 0.53 6.57 16 31 C 0.12 3.38 3.98 38.50 0.15 3.53 16 32 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.09 1.94 6.91 -2.38 -0.02 1.92 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.85 7.26 -2.39 -0.02 1.83 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 1.04 7.78 -2.38 -0.02 1.02 16 39 H 0.04 1.59 7.26 -2.39 -0.02 1.57 16 40 H 0.07 1.96 7.59 -2.39 -0.02 1.95 16 41 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.57 5.23 -2.38 -0.01 1.55 16 43 H 0.08 1.72 5.34 -2.38 -0.01 1.71 16 44 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.09 1.41 5.64 -2.39 -0.01 1.40 16 46 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.04 1.52 7.68 -2.39 -0.02 1.50 16 48 H 0.04 1.64 7.25 -2.38 -0.02 1.63 16 49 H 0.04 2.07 4.53 -2.39 -0.01 2.06 16 50 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 51 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.03 1.70 6.46 -2.39 -0.02 1.68 16 Total: -1.00 -90.19 392.11 1.31 -88.87 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -1.04 Total: 17.16 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 6.18 Total: 7.32 kcal Atomic # 7 Polarization: -129.68 SS G_CDS: -5.45 Total: -135.13 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.05 Total: -27.78 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.68 Total: 49.56 kcal Total: -90.19 1.31 -88.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084841307.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.147 kcal (2) G-P(sol) polarization free energy of solvation -90.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds