Wall clock time and date at job start Wed Apr 1 2020 03:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30832 * 125.90242 * 2 1 4 4 N 1.40084 * 108.20530 * 179.81254 * 3 2 1 5 5 H 0.96998 * 126.03518 * 180.23541 * 4 3 2 6 6 C 1.34941 * 107.92594 * 0.36288 * 4 3 2 7 7 C 1.50701 * 126.12828 * 179.90472 * 6 4 3 8 8 C 1.35315 * 107.74745 * 359.64383 * 6 4 3 9 9 C 1.50698 * 126.04003 * 180.20605 * 8 6 4 10 10 C 1.52997 * 109.47281 * 89.99741 * 9 8 6 11 11 H 1.09005 * 109.47135 * 54.99629 * 10 9 8 12 12 C 1.53003 * 109.47295 * 295.00153 * 10 9 8 13 13 C 1.50703 * 109.47490 * 174.99591 * 10 9 8 14 14 O 1.21280 * 119.99605 * 0.02562 * 13 10 9 15 15 N 1.34773 * 120.00094 * 180.02562 * 13 10 9 16 16 C 1.47287 * 136.54799 * 0.02562 * 15 13 10 17 17 C 1.54081 * 87.60789 * 151.36844 * 16 15 13 18 18 H 1.08997 * 115.04297 * 142.50341 * 17 16 15 19 19 C 1.53065 * 111.39089 * 273.97272 * 17 16 15 20 20 C 1.53148 * 109.21548 * 142.39668 * 19 17 16 21 21 N 1.46544 * 108.25224 * 301.59225 * 20 19 17 22 22 C 1.36929 * 119.73690 * 236.43782 * 21 20 19 23 23 H 1.07999 * 119.99945 * 25.18943 * 22 21 20 24 24 C 1.38812 * 119.99927 * 205.18378 * 22 21 20 25 25 N 1.31622 * 120.00324 * 14.47705 * 24 22 21 26 26 Si 1.86804 * 120.00078 * 194.47972 * 24 22 21 27 27 H 1.48506 * 109.47109 * 89.99910 * 26 24 22 28 28 H 1.48492 * 109.47056 * 209.99842 * 26 24 22 29 29 H 1.48496 * 109.47119 * 329.99852 * 26 24 22 30 30 C 1.45702 * 120.51984 * 56.41741 * 21 20 19 31 31 C 1.46472 * 136.54033 * 179.63137 * 15 13 10 32 32 H 1.09000 * 111.44158 * 96.38454 * 31 15 13 33 33 H 1.08998 * 109.47491 * 269.96160 * 1 2 3 34 34 H 1.09008 * 109.46848 * 29.95995 * 1 2 3 35 35 H 1.09001 * 109.47542 * 149.95456 * 1 2 3 36 36 H 1.09002 * 109.47177 * 269.69468 * 7 6 4 37 37 H 1.09000 * 109.47648 * 149.69194 * 7 6 4 38 38 H 1.09006 * 109.46905 * 29.68815 * 7 6 4 39 39 H 1.09007 * 109.47078 * 209.99671 * 9 8 6 40 40 H 1.08999 * 109.47369 * 329.99804 * 9 8 6 41 41 H 1.08999 * 109.47316 * 180.02562 * 12 10 9 42 42 H 1.09005 * 109.46601 * 299.99803 * 12 10 9 43 43 H 1.08996 * 109.47091 * 59.99407 * 12 10 9 44 44 H 1.08999 * 113.52871 * 266.05270 * 16 15 13 45 45 H 1.08997 * 113.52177 * 36.61299 * 16 15 13 46 46 H 1.09000 * 109.51762 * 262.32522 * 19 17 16 47 47 H 1.09004 * 109.51615 * 22.42727 * 19 17 16 48 48 H 1.09003 * 109.70262 * 61.28020 * 20 19 17 49 49 H 1.08991 * 109.70801 * 181.85864 * 20 19 17 50 50 H 0.96998 * 120.00541 * 180.02562 * 25 24 22 51 51 H 1.09002 * 108.78865 * 80.90148 * 30 21 20 52 52 H 1.08997 * 108.78782 * 199.11006 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6339 0.0044 5 1 4.3908 1.2077 0.0085 6 6 3.6142 -0.7155 -0.0012 7 6 4.8349 -1.5991 -0.0012 8 6 2.3271 -1.1331 -0.0008 9 6 1.8598 -2.5658 -0.0015 10 6 1.7025 -3.0517 1.4407 11 1 1.0373 -2.3778 1.9807 12 6 3.0713 -3.0727 2.1241 13 6 1.1190 -4.4412 1.4420 14 8 0.8554 -4.9890 0.3926 15 7 0.8901 -5.0749 2.6092 16 6 1.0617 -4.7741 4.0408 17 6 -0.1255 -5.7171 4.3151 18 1 -0.0351 -6.3224 5.2170 19 6 -1.4623 -4.9812 4.1951 20 6 -2.4944 -5.9123 3.5522 21 7 -1.9874 -6.3231 2.2400 22 6 -2.7390 -6.0925 1.1189 23 1 -3.4637 -5.2917 1.1099 24 6 -2.5695 -6.8878 -0.0060 25 7 -1.9110 -8.0239 0.0843 26 14 -3.2759 -6.3458 -1.6482 27 1 -2.2685 -5.5331 -2.3764 28 1 -3.6245 -7.5419 -2.4561 29 1 -4.4960 -5.5314 -1.4177 30 6 -0.6897 -6.9745 2.1189 31 6 0.3520 -6.3714 3.0273 32 1 1.1484 -7.0912 3.2162 33 1 -0.3634 -0.0007 1.0276 34 1 -0.3633 0.8904 -0.5133 35 1 -0.3634 -0.8896 -0.5145 36 1 5.1290 -1.8124 -1.0289 37 1 4.6076 -2.5330 0.5128 38 1 5.6512 -1.0910 0.5122 39 1 0.9007 -2.6349 -0.5148 40 1 2.5930 -3.1869 -0.5161 41 1 2.9593 -3.4193 3.1514 42 1 3.7366 -3.7466 1.5841 43 1 3.4933 -2.0677 2.1231 44 1 2.0059 -5.1326 4.4506 45 1 0.8597 -3.7333 4.2938 46 1 -1.8058 -4.6862 5.1866 47 1 -1.3352 -4.0939 3.5749 48 1 -2.6395 -6.7904 4.1815 49 1 -3.4408 -5.3853 3.4327 50 1 -1.7922 -8.5795 -0.7019 51 1 -0.8029 -8.0306 2.3637 52 1 -0.3496 -6.8902 1.0868 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084841308.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:02 Heat of formation + Delta-G solvation = 94.361688 kcal Electronic energy + Delta-G solvation = -32584.881568 eV Core-core repulsion = 28587.845280 eV Total energy + Delta-G solvation = -3997.036288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.51485 -40.49684 -37.99375 -35.15497 -34.88352 -33.52846 -32.11292 -31.23398 -30.06649 -29.04760 -28.29433 -27.66947 -26.87437 -25.62875 -23.86179 -23.49851 -22.16531 -20.93054 -20.21502 -19.62151 -18.94801 -17.69298 -17.31058 -16.76934 -15.93320 -15.66288 -15.60935 -15.06679 -14.76379 -14.14023 -13.89457 -13.75495 -13.59354 -13.48576 -13.34517 -13.23293 -13.01606 -12.76842 -12.56921 -12.47609 -12.42804 -12.40510 -12.13972 -11.94869 -11.85121 -11.65894 -11.40094 -11.08732 -10.99718 -10.79211 -10.61605 -10.54880 -10.43290 -10.39739 -10.12859 -9.79655 -9.72145 -9.45600 -9.29416 -8.82202 -8.36730 -8.21119 -8.00207 -6.53335 -5.59557 -3.01420 1.75853 2.64563 2.75865 3.34090 3.42990 3.52670 3.58138 3.61249 4.52355 4.60566 4.65869 4.74098 4.81758 4.85844 5.05321 5.09344 5.23386 5.24895 5.28828 5.44079 5.49285 5.52498 5.56346 5.57432 5.62590 5.65269 5.67109 5.68136 5.79085 5.83478 5.85388 5.95894 5.99809 6.05654 6.07005 6.19810 6.23867 6.34004 6.39979 6.44335 6.46718 6.59417 6.65884 6.69550 6.84041 7.04938 7.19756 7.56501 7.64057 7.84060 8.00687 8.46738 8.63801 8.90716 9.41958 10.06402 10.53791 11.48575 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010928 B = 0.003899 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.568905 B = 7179.451910 C = 8339.375272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.088 3.912 3 N -0.301 5.301 4 N -0.481 5.481 5 H 0.435 0.565 6 C 0.088 3.912 7 C -0.105 4.105 8 C -0.222 4.222 9 C -0.023 4.023 10 C -0.095 4.095 11 H 0.089 0.911 12 C -0.143 4.143 13 C 0.543 3.457 14 O -0.515 6.515 15 N -0.631 5.631 16 C 0.096 3.904 17 C -0.114 4.114 18 H 0.089 0.911 19 C -0.115 4.115 20 C 0.149 3.851 21 N -0.584 5.584 22 C -0.252 4.252 23 H 0.062 0.938 24 C 0.013 3.987 25 N -0.904 5.904 26 Si 0.899 3.101 27 H -0.285 1.285 28 H -0.293 1.293 29 H -0.282 1.282 30 C 0.167 3.833 31 C 0.119 3.881 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.018 0.982 49 H 0.055 0.945 50 H 0.251 0.749 51 H 0.027 0.973 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.817 12.996 7.633 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.079 4.079 3 N -0.124 5.124 4 N -0.189 5.189 5 H 0.278 0.722 6 C -0.040 4.040 7 C -0.163 4.163 8 C -0.233 4.233 9 C -0.062 4.062 10 C -0.117 4.117 11 H 0.107 0.893 12 C -0.200 4.200 13 C 0.331 3.669 14 O -0.390 6.390 15 N -0.367 5.367 16 C -0.027 4.027 17 C -0.133 4.133 18 H 0.107 0.893 19 C -0.154 4.154 20 C 0.022 3.978 21 N -0.307 5.307 22 C -0.381 4.381 23 H 0.080 0.920 24 C -0.186 4.186 25 N -0.549 5.549 26 Si 0.729 3.271 27 H -0.212 1.212 28 H -0.220 1.220 29 H -0.207 1.207 30 C 0.041 3.959 31 C 0.015 3.985 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.036 0.964 49 H 0.073 0.927 50 H 0.061 0.939 51 H 0.045 0.955 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.763 13.944 6.673 20.698 hybrid contribution 0.353 -0.190 -0.765 0.863 sum 14.116 13.754 5.908 20.575 Atomic orbital electron populations 1.20250 0.86592 1.03643 1.03251 1.22281 0.97023 0.90179 0.98388 1.77264 0.86424 1.22350 1.26385 1.46106 1.07247 1.04786 1.60793 0.72214 1.20840 0.96945 0.84769 1.01428 1.20736 0.92727 0.99151 1.03690 1.19754 0.91021 0.96395 1.16172 1.19680 1.02702 0.89195 0.94578 1.21174 0.97840 0.94327 0.98350 0.89293 1.21939 0.95791 1.02004 1.00290 1.19916 0.78057 0.87029 0.81865 1.90786 1.50737 1.67503 1.29926 1.49432 1.63446 1.19419 1.04438 1.23278 0.98172 0.99961 0.81331 1.22694 0.95026 0.97801 0.97802 0.89253 1.21837 0.94808 0.99267 0.99510 1.20712 0.94411 0.94897 0.87799 1.43459 1.15652 1.70341 1.01239 1.19089 1.17786 1.10232 0.91011 0.92042 1.24891 0.99825 0.95031 0.98833 1.70008 1.45493 1.11139 1.28267 0.86345 0.78501 0.77506 0.84713 1.21230 1.21979 1.20728 1.20155 0.82895 0.92921 0.99933 1.22451 0.96674 0.86102 0.93265 0.91423 0.90363 0.91014 0.89812 0.90193 0.88574 0.91279 0.89946 0.90891 0.92381 0.92270 0.91742 0.90797 0.91273 0.92841 0.92106 0.96410 0.92692 0.93890 0.95501 0.87782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.26 36.01 0.37 -0.57 16 2 C 0.09 1.18 7.22 -82.41 -0.59 0.59 16 3 N -0.30 -4.05 12.70 33.67 0.43 -3.62 16 4 N -0.48 -5.06 7.36 33.47 0.25 -4.81 16 5 H 0.43 3.10 8.96 -182.61 -1.64 1.46 16 6 C 0.09 0.94 6.26 -82.27 -0.52 0.43 16 7 C -0.10 -0.79 9.47 36.01 0.34 -0.45 16 8 C -0.22 -2.87 4.82 -105.05 -0.51 -3.38 16 9 C -0.02 -0.33 3.99 -27.89 -0.11 -0.44 16 10 C -0.10 -1.35 2.61 -91.77 -0.24 -1.59 16 11 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 12 C -0.14 -1.57 7.47 37.16 0.28 -1.29 16 13 C 0.54 10.28 7.34 -10.99 -0.08 10.20 16 14 O -0.52 -12.47 15.16 5.56 0.08 -12.39 16 15 N -0.63 -11.04 3.29 -188.07 -0.62 -11.66 16 16 C 0.10 1.24 6.10 -11.54 -0.07 1.17 16 17 C -0.11 -1.71 4.57 -90.47 -0.41 -2.12 16 18 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 19 C -0.11 -1.89 5.69 -26.62 -0.15 -2.04 16 20 C 0.15 3.06 6.46 -3.94 -0.03 3.04 16 21 N -0.58 -14.89 3.03 -175.07 -0.53 -15.42 16 22 C -0.25 -7.20 9.53 -15.06 -0.14 -7.34 16 23 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 24 C 0.01 0.37 4.94 -17.43 -0.09 0.29 16 25 N -0.90 -27.52 10.94 55.49 0.61 -26.91 16 26 Si 0.90 23.35 29.58 -169.99 -5.03 18.33 16 27 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 28 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 29 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 30 C 0.17 4.14 4.59 -5.57 -0.03 4.11 16 31 C 0.12 2.25 3.98 -77.99 -0.31 1.94 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.08 1.03 7.25 -51.93 -0.38 0.66 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.76 4.53 -51.93 -0.24 0.53 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 1.37 7.07 -51.92 -0.37 1.00 16 40 H 0.07 1.06 7.77 -51.93 -0.40 0.65 16 41 H 0.06 0.60 6.41 -51.93 -0.33 0.26 16 42 H 0.06 0.64 6.97 -51.93 -0.36 0.27 16 43 H 0.06 0.64 5.79 -51.93 -0.30 0.34 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 1.09 7.68 -51.93 -0.40 0.69 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.05 1.12 7.87 -51.93 -0.41 0.72 16 50 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 51 H 0.03 0.72 8.00 -51.93 -0.42 0.31 16 52 H 0.10 3.04 4.95 -51.93 -0.26 2.78 16 LS Contribution 397.56 15.07 5.99 5.99 Total: -1.00 -35.92 397.56 -10.79 -46.72 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -9.69 Total: 1.22 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -2.29 Total: 2.55 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.13 Total: -62.42 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.39 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.03 Total: 18.33 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.92 -10.79 -46.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084841308.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.078 kcal (2) G-P(sol) polarization free energy of solvation -35.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds