Wall clock time and date at job start Wed Apr 1 2020 03:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30832 * 125.90242 * 2 1 4 4 N 1.40084 * 108.20530 * 179.81254 * 3 2 1 5 5 H 0.96998 * 126.03518 * 180.23541 * 4 3 2 6 6 C 1.34941 * 107.92594 * 0.36288 * 4 3 2 7 7 C 1.50701 * 126.12828 * 179.90472 * 6 4 3 8 8 C 1.35315 * 107.74745 * 359.64383 * 6 4 3 9 9 C 1.50698 * 126.04003 * 180.20605 * 8 6 4 10 10 C 1.52997 * 109.47281 * 89.99741 * 9 8 6 11 11 H 1.09005 * 109.47135 * 54.99629 * 10 9 8 12 12 C 1.53003 * 109.47295 * 295.00153 * 10 9 8 13 13 C 1.50703 * 109.47490 * 174.99591 * 10 9 8 14 14 O 1.21280 * 119.99605 * 0.02562 * 13 10 9 15 15 N 1.34773 * 120.00094 * 180.02562 * 13 10 9 16 16 C 1.47287 * 136.54799 * 0.02562 * 15 13 10 17 17 C 1.54081 * 87.60789 * 151.36844 * 16 15 13 18 18 H 1.08997 * 115.04297 * 142.50341 * 17 16 15 19 19 C 1.53065 * 111.39089 * 273.97272 * 17 16 15 20 20 C 1.53148 * 109.21548 * 142.39668 * 19 17 16 21 21 N 1.46544 * 108.25224 * 301.59225 * 20 19 17 22 22 C 1.36929 * 119.73690 * 236.43782 * 21 20 19 23 23 H 1.07999 * 119.99945 * 25.18943 * 22 21 20 24 24 C 1.38812 * 119.99927 * 205.18378 * 22 21 20 25 25 N 1.31622 * 120.00324 * 14.47705 * 24 22 21 26 26 Si 1.86804 * 120.00078 * 194.47972 * 24 22 21 27 27 H 1.48506 * 109.47109 * 89.99910 * 26 24 22 28 28 H 1.48492 * 109.47056 * 209.99842 * 26 24 22 29 29 H 1.48496 * 109.47119 * 329.99852 * 26 24 22 30 30 C 1.45702 * 120.51984 * 56.41741 * 21 20 19 31 31 C 1.46472 * 136.54033 * 179.63137 * 15 13 10 32 32 H 1.09000 * 111.44158 * 96.38454 * 31 15 13 33 33 H 1.08998 * 109.47491 * 269.96160 * 1 2 3 34 34 H 1.09008 * 109.46848 * 29.95995 * 1 2 3 35 35 H 1.09001 * 109.47542 * 149.95456 * 1 2 3 36 36 H 1.09002 * 109.47177 * 269.69468 * 7 6 4 37 37 H 1.09000 * 109.47648 * 149.69194 * 7 6 4 38 38 H 1.09006 * 109.46905 * 29.68815 * 7 6 4 39 39 H 1.09007 * 109.47078 * 209.99671 * 9 8 6 40 40 H 1.08999 * 109.47369 * 329.99804 * 9 8 6 41 41 H 1.08999 * 109.47316 * 180.02562 * 12 10 9 42 42 H 1.09005 * 109.46601 * 299.99803 * 12 10 9 43 43 H 1.08996 * 109.47091 * 59.99407 * 12 10 9 44 44 H 1.08999 * 113.52871 * 266.05270 * 16 15 13 45 45 H 1.08997 * 113.52177 * 36.61299 * 16 15 13 46 46 H 1.09000 * 109.51762 * 262.32522 * 19 17 16 47 47 H 1.09004 * 109.51615 * 22.42727 * 19 17 16 48 48 H 1.09003 * 109.70262 * 61.28020 * 20 19 17 49 49 H 1.08991 * 109.70801 * 181.85864 * 20 19 17 50 50 H 0.96998 * 120.00541 * 180.02562 * 25 24 22 51 51 H 1.09002 * 108.78865 * 80.90148 * 30 21 20 52 52 H 1.08997 * 108.78782 * 199.11006 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6339 0.0044 5 1 4.3908 1.2077 0.0085 6 6 3.6142 -0.7155 -0.0012 7 6 4.8349 -1.5991 -0.0012 8 6 2.3271 -1.1331 -0.0008 9 6 1.8598 -2.5658 -0.0015 10 6 1.7025 -3.0517 1.4407 11 1 1.0373 -2.3778 1.9807 12 6 3.0713 -3.0727 2.1241 13 6 1.1190 -4.4412 1.4420 14 8 0.8554 -4.9890 0.3926 15 7 0.8901 -5.0749 2.6092 16 6 1.0617 -4.7741 4.0408 17 6 -0.1255 -5.7171 4.3151 18 1 -0.0351 -6.3224 5.2170 19 6 -1.4623 -4.9812 4.1951 20 6 -2.4944 -5.9123 3.5522 21 7 -1.9874 -6.3231 2.2400 22 6 -2.7390 -6.0925 1.1189 23 1 -3.4637 -5.2917 1.1099 24 6 -2.5695 -6.8878 -0.0060 25 7 -1.9110 -8.0239 0.0843 26 14 -3.2759 -6.3458 -1.6482 27 1 -2.2685 -5.5331 -2.3764 28 1 -3.6245 -7.5419 -2.4561 29 1 -4.4960 -5.5314 -1.4177 30 6 -0.6897 -6.9745 2.1189 31 6 0.3520 -6.3714 3.0273 32 1 1.1484 -7.0912 3.2162 33 1 -0.3634 -0.0007 1.0276 34 1 -0.3633 0.8904 -0.5133 35 1 -0.3634 -0.8896 -0.5145 36 1 5.1290 -1.8124 -1.0289 37 1 4.6076 -2.5330 0.5128 38 1 5.6512 -1.0910 0.5122 39 1 0.9007 -2.6349 -0.5148 40 1 2.5930 -3.1869 -0.5161 41 1 2.9593 -3.4193 3.1514 42 1 3.7366 -3.7466 1.5841 43 1 3.4933 -2.0677 2.1231 44 1 2.0059 -5.1326 4.4506 45 1 0.8597 -3.7333 4.2938 46 1 -1.8058 -4.6862 5.1866 47 1 -1.3352 -4.0939 3.5749 48 1 -2.6395 -6.7904 4.1815 49 1 -3.4408 -5.3853 3.4327 50 1 -1.7922 -8.5795 -0.7019 51 1 -0.8029 -8.0306 2.3637 52 1 -0.3496 -6.8902 1.0868 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084841308.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:01 Heat of formation + Delta-G solvation = 69.764025 kcal Electronic energy + Delta-G solvation = -32585.948203 eV Core-core repulsion = 28587.845280 eV Total energy + Delta-G solvation = -3998.102923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.45518 -41.85968 -39.43789 -37.00817 -36.07592 -34.40299 -33.94972 -32.28009 -31.83823 -30.35049 -29.38512 -28.58149 -28.53355 -26.53602 -25.64991 -24.93322 -23.50778 -22.49933 -21.13750 -20.90719 -19.98108 -19.42725 -18.44472 -18.09243 -17.39866 -17.21214 -16.99714 -16.37545 -16.02925 -15.77482 -15.50782 -14.98651 -14.91970 -14.63529 -14.54958 -14.43666 -14.23414 -13.99972 -13.86430 -13.71945 -13.50183 -13.43136 -13.26733 -13.16418 -13.10996 -12.88339 -12.69254 -12.68195 -12.65217 -12.29865 -12.18669 -12.05624 -11.91714 -11.81726 -11.65609 -11.44996 -11.41222 -10.99624 -10.60499 -10.22673 -10.17014 -9.41376 -9.30082 -8.63654 -7.81872 -5.25123 0.87191 1.36577 1.45035 1.47358 1.64695 1.93386 1.96369 2.14058 2.50980 3.34004 3.50100 3.54705 3.71864 3.77301 3.78781 3.98343 3.99103 4.06747 4.21350 4.27924 4.40682 4.45879 4.52368 4.53589 4.60127 4.65569 4.68691 4.71566 4.73001 4.74756 4.82071 4.87772 4.91561 4.93777 4.98697 5.03440 5.07243 5.10622 5.14638 5.18344 5.22102 5.27753 5.37456 5.40571 5.49063 5.59887 5.69612 5.75668 5.88334 6.43521 6.45383 6.73133 7.11103 7.23317 7.48433 8.00596 8.38630 9.22305 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010928 B = 0.003899 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.568905 B = 7179.451910 C = 8339.375272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.074 3.926 3 N -0.325 5.325 4 N -0.468 5.468 5 H 0.450 0.550 6 C 0.108 3.892 7 C -0.105 4.105 8 C -0.247 4.247 9 C -0.012 4.012 10 C -0.081 4.081 11 H 0.093 0.907 12 C -0.133 4.133 13 C 0.531 3.469 14 O -0.585 6.585 15 N -0.637 5.637 16 C 0.111 3.889 17 C -0.104 4.104 18 H 0.128 0.872 19 C -0.104 4.104 20 C 0.139 3.861 21 N -0.602 5.602 22 C -0.254 4.254 23 H 0.059 0.941 24 C -0.042 4.042 25 N -0.933 5.933 26 Si 0.951 3.049 27 H -0.300 1.300 28 H -0.291 1.291 29 H -0.263 1.263 30 C 0.181 3.819 31 C 0.105 3.895 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.114 0.886 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.043 0.957 48 H 0.025 0.975 49 H 0.049 0.951 50 H 0.243 0.757 51 H -0.010 1.010 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.110 15.299 10.909 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 N -0.149 5.149 4 N -0.178 5.178 5 H 0.297 0.703 6 C -0.022 4.022 7 C -0.163 4.163 8 C -0.258 4.258 9 C -0.051 4.051 10 C -0.102 4.102 11 H 0.111 0.889 12 C -0.190 4.190 13 C 0.322 3.678 14 O -0.465 6.465 15 N -0.372 5.372 16 C -0.010 4.010 17 C -0.123 4.123 18 H 0.146 0.854 19 C -0.143 4.143 20 C 0.014 3.986 21 N -0.325 5.325 22 C -0.385 4.385 23 H 0.077 0.923 24 C -0.237 4.237 25 N -0.580 5.580 26 Si 0.780 3.220 27 H -0.228 1.228 28 H -0.217 1.217 29 H -0.188 1.188 30 C 0.055 3.945 31 C 0.000 4.000 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.132 0.868 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.062 0.938 48 H 0.043 0.957 49 H 0.068 0.932 50 H 0.052 0.948 51 H 0.008 0.992 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.055 16.301 10.037 24.984 hybrid contribution -0.382 -0.929 -1.758 2.025 sum 15.672 15.372 8.279 23.462 Atomic orbital electron populations 1.20239 0.86443 1.03286 1.03679 1.22456 0.97546 0.90508 0.98692 1.77207 0.87635 1.22613 1.27440 1.46124 1.07020 1.05050 1.59598 0.70286 1.21206 0.97168 0.85012 0.98795 1.20878 0.92113 0.98635 1.04718 1.19629 0.92201 0.95183 1.18809 1.19447 1.00589 0.90474 0.94575 1.21113 0.99683 0.90892 0.98548 0.88855 1.21909 0.93322 1.03185 1.00610 1.20839 0.77168 0.88427 0.81334 1.90759 1.53705 1.69409 1.32587 1.49608 1.62414 1.18806 1.06338 1.23495 0.98873 1.01132 0.77528 1.22731 0.95041 0.97904 0.96611 0.85390 1.21710 0.94309 0.97353 1.00887 1.20960 0.95789 0.95969 0.85861 1.43707 1.16032 1.70363 1.02394 1.19386 1.17323 1.09368 0.92418 0.92291 1.25552 1.01081 0.95412 1.01672 1.70175 1.47312 1.12215 1.28249 0.85501 0.78080 0.77075 0.81297 1.22846 1.21722 1.18762 1.19756 0.84338 0.91738 0.98682 1.22464 0.95748 0.87489 0.94308 0.89722 0.89534 0.90198 0.91284 0.89342 0.88755 0.88148 0.93643 0.91658 0.90753 0.92080 0.90062 0.86799 0.88783 0.88377 0.93830 0.95747 0.93226 0.94800 0.99224 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.90 10.26 71.24 0.73 -1.17 16 2 C 0.07 1.96 7.22 43.10 0.31 2.27 16 3 N -0.32 -8.31 12.70 -47.39 -0.60 -8.91 16 4 N -0.47 -8.69 7.36 -48.01 -0.35 -9.05 16 5 H 0.45 5.03 8.96 -213.33 -1.91 3.12 16 6 C 0.11 2.06 6.26 41.41 0.26 2.32 16 7 C -0.11 -1.25 9.47 71.24 0.67 -0.57 16 8 C -0.25 -6.23 4.82 -20.14 -0.10 -6.33 16 9 C -0.01 -0.35 3.99 29.85 0.12 -0.23 16 10 C -0.08 -2.24 2.61 -11.54 -0.03 -2.27 16 11 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 12 C -0.13 -2.49 7.47 71.98 0.54 -1.95 16 13 C 0.53 20.46 7.34 87.66 0.64 21.10 16 14 O -0.59 -30.32 15.16 -3.03 -0.05 -30.36 16 15 N -0.64 -21.40 3.29 -867.32 -2.85 -24.25 16 16 C 0.11 2.31 6.10 81.09 0.49 2.80 16 17 C -0.10 -2.69 4.57 -10.69 -0.05 -2.74 16 18 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 19 C -0.10 -3.07 5.69 30.67 0.17 -2.89 16 20 C 0.14 5.64 6.46 86.42 0.56 6.20 16 21 N -0.60 -31.63 3.03 -707.80 -2.14 -33.77 16 22 C -0.25 -15.16 9.53 84.03 0.80 -14.36 16 23 H 0.06 3.46 7.83 -2.91 -0.02 3.43 16 24 C -0.04 -2.58 4.94 84.86 0.42 -2.16 16 25 N -0.93 -60.32 10.94 21.65 0.24 -60.08 16 26 Si 0.95 50.43 29.58 68.60 2.03 52.46 16 27 H -0.30 -16.54 7.11 99.48 0.71 -15.83 16 28 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 29 H -0.26 -12.99 7.11 99.48 0.71 -12.28 16 30 C 0.18 9.40 4.59 85.82 0.39 9.79 16 31 C 0.10 3.86 3.98 38.49 0.15 4.02 16 32 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.07 1.85 7.25 -2.39 -0.02 1.83 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.21 4.53 -2.39 -0.01 1.20 16 38 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.04 1.65 7.07 -2.38 -0.02 1.64 16 40 H 0.06 1.98 7.77 -2.39 -0.02 1.96 16 41 H 0.07 1.16 6.41 -2.39 -0.02 1.15 16 42 H 0.06 1.14 6.97 -2.38 -0.02 1.13 16 43 H 0.08 1.28 5.79 -2.39 -0.01 1.27 16 44 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.09 1.59 8.05 -2.39 -0.02 1.57 16 46 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.04 1.45 7.68 -2.38 -0.02 1.43 16 48 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.05 2.02 7.87 -2.39 -0.02 2.00 16 50 H 0.24 15.43 8.31 -92.71 -0.77 14.66 16 51 H -0.01 -0.57 8.00 -2.39 -0.02 -0.59 16 52 H 0.05 3.27 4.95 -2.39 -0.01 3.25 16 Total: -1.00 -87.57 397.56 1.39 -86.17 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -0.98 Total: 13.96 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 6.10 Total: 13.83 kcal Atomic # 7 Polarization: -130.36 SS G_CDS: -5.71 Total: -136.07 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.05 Total: -30.36 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 2.03 Total: 52.46 kcal Total: -87.57 1.39 -86.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084841308.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.937 kcal (2) G-P(sol) polarization free energy of solvation -87.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds