Wall clock time and date at job start Wed Apr 1 2020 03:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30839 * 125.90028 * 2 1 4 4 N 1.40087 * 108.20844 * 179.74822 * 3 2 1 5 5 H 0.96997 * 126.04091 * 180.23902 * 4 3 2 6 6 C 1.34948 * 107.92438 * 0.36242 * 4 3 2 7 7 C 1.50696 * 126.12709 * 179.90822 * 6 4 3 8 8 C 1.35315 * 107.74375 * 359.64165 * 6 4 3 9 9 C 1.50703 * 126.03847 * 180.24430 * 8 6 4 10 10 H 1.09001 * 109.47228 * 0.02562 * 9 8 6 11 11 C 1.52999 * 109.46837 * 120.00266 * 9 8 6 12 12 C 1.50699 * 109.47402 * 240.00245 * 9 8 6 13 13 O 1.21281 * 119.99999 * 347.39810 * 12 9 8 14 14 N 1.34775 * 120.00098 * 167.40232 * 12 9 8 15 15 C 1.47148 * 121.21889 * 4.70181 * 14 12 9 16 16 C 1.53335 * 107.71590 * 122.68754 * 15 14 12 17 17 C 1.53088 * 110.50464 * 57.56724 * 16 15 14 18 18 H 1.09001 * 112.49395 * 70.43573 * 17 16 15 19 19 C 1.56035 * 106.38753 * 195.31120 * 17 16 15 20 20 C 1.54507 * 102.60855 * 78.36581 * 19 17 16 21 21 N 1.47436 * 107.14617 * 22.86131 * 20 19 17 22 22 C 1.36932 * 126.05819 * 181.65337 * 21 20 19 23 23 H 1.08001 * 120.00603 * 179.97438 * 22 21 20 24 24 C 1.38815 * 120.00265 * 359.94945 * 22 21 20 25 25 N 1.31629 * 119.99678 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00349 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46845 * 90.00220 * 26 24 22 28 28 H 1.48503 * 109.47173 * 210.00135 * 26 24 22 29 29 H 1.48500 * 109.47173 * 330.00105 * 26 24 22 30 30 C 1.46467 * 107.88154 * 1.60761 * 21 20 19 31 31 H 1.08997 * 107.85832 * 89.63735 * 30 21 20 32 32 C 1.46759 * 121.21845 * 184.99255 * 14 12 9 33 33 H 1.09008 * 109.46962 * 270.03915 * 1 2 3 34 34 H 1.08998 * 109.47453 * 30.03654 * 1 2 3 35 35 H 1.09002 * 109.47135 * 150.04144 * 1 2 3 36 36 H 1.09000 * 109.47148 * 269.68557 * 7 6 4 37 37 H 1.08998 * 109.47175 * 149.69238 * 7 6 4 38 38 H 1.08996 * 109.47497 * 29.68970 * 7 6 4 39 39 H 1.09004 * 109.47043 * 186.38361 * 11 9 8 40 40 H 1.09000 * 109.47615 * 306.37929 * 11 9 8 41 41 H 1.09000 * 109.47474 * 66.38257 * 11 9 8 42 42 H 1.09001 * 109.76760 * 242.33636 * 15 14 12 43 43 H 1.09007 * 109.76228 * 3.09560 * 15 14 12 44 44 H 1.09006 * 109.39460 * 297.23916 * 16 15 14 45 45 H 1.09007 * 109.19083 * 177.76634 * 16 15 14 46 46 H 1.08999 * 110.78354 * 196.64729 * 19 17 16 47 47 H 1.08997 * 110.77643 * 319.90060 * 19 17 16 48 48 H 1.09002 * 109.89632 * 142.23205 * 20 19 17 49 49 H 1.08994 * 109.90267 * 263.47135 * 20 19 17 50 50 H 0.97000 * 119.99763 * 179.97438 * 25 24 22 51 51 H 1.09004 * 109.22754 * 352.84442 * 32 14 12 52 52 H 1.09000 * 109.23190 * 112.21159 * 32 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 0.0058 5 1 4.3908 1.2079 0.0104 6 6 3.6143 -0.7153 0.0012 7 6 4.8351 -1.5988 0.0029 8 6 2.3272 -1.1330 0.0008 9 6 1.8600 -2.5657 0.0014 10 1 2.7244 -3.2298 0.0028 11 6 1.0154 -2.8261 1.2504 12 6 1.0296 -2.8239 -1.2293 13 8 0.6440 -1.8947 -1.9066 14 7 0.7153 -4.0875 -1.5773 15 6 1.0806 -5.2275 -0.7217 16 6 -0.2085 -5.9806 -0.3722 17 6 -0.9278 -6.4322 -1.6459 18 1 -0.3982 -7.2327 -2.1624 19 6 -2.3778 -6.8195 -1.2188 20 6 -3.0675 -5.4438 -1.0808 21 7 -2.3042 -4.4901 -1.9062 22 6 -2.5620 -3.1517 -2.0378 23 1 -1.9362 -2.5409 -2.6716 24 6 -3.6280 -2.5799 -1.3568 25 7 -4.3907 -3.3243 -0.5842 26 14 -3.9801 -0.7543 -1.5368 27 1 -4.9127 -0.5397 -2.6724 28 1 -4.5970 -0.2435 -0.2863 29 1 -2.7106 -0.0284 -1.7949 30 6 -1.2206 -5.2277 -2.5597 31 1 -1.5973 -5.6012 -3.5118 32 6 0.0016 -4.3773 -2.8266 33 1 -0.3633 0.0007 1.0277 34 1 -0.3634 0.8896 -0.5144 35 1 -0.3633 -0.8904 -0.5132 36 1 5.1301 -1.8129 -1.0243 37 1 4.6073 -2.5324 0.5174 38 1 5.6508 -1.0905 0.5168 39 1 0.7724 -3.8871 1.3099 40 1 1.5773 -2.5319 2.1368 41 1 0.0949 -2.2451 1.1942 42 1 1.7623 -5.8875 -1.2582 43 1 1.5574 -4.8665 0.1897 44 1 -0.8665 -5.3261 0.1994 45 1 0.0393 -6.8549 0.2299 46 1 -2.8611 -7.4188 -1.9904 47 1 -2.3717 -7.3497 -0.2665 48 1 -4.0947 -5.5062 -1.4400 49 1 -3.0550 -5.1255 -0.0384 50 1 -5.1353 -2.9247 -0.1081 51 1 -0.3074 -3.4399 -3.2892 52 1 0.6679 -4.9094 -3.5055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085057831.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:57 Heat of formation + Delta-G solvation = 68.906756 kcal Electronic energy + Delta-G solvation = -33775.837153 eV Core-core repulsion = 29777.697057 eV Total energy + Delta-G solvation = -3998.140097 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.34409 -39.85492 -38.02341 -34.94703 -34.05099 -33.15091 -32.73622 -31.11040 -30.25957 -28.87185 -28.31408 -27.66285 -26.66294 -24.84916 -24.33852 -22.99678 -22.47627 -20.35227 -19.91794 -19.85974 -18.81593 -17.99982 -17.21692 -16.47919 -16.41077 -15.40128 -14.97097 -14.84163 -14.62610 -14.46043 -13.98282 -13.91034 -13.50958 -13.40470 -13.20882 -13.05216 -12.92624 -12.70422 -12.62374 -12.22948 -12.12083 -12.02064 -11.88417 -11.61804 -11.49499 -11.34687 -11.28652 -11.08111 -11.04090 -10.83363 -10.69834 -10.60164 -10.12562 -10.01844 -9.80648 -9.72777 -9.59248 -9.41828 -9.01135 -8.95118 -8.46078 -8.21012 -7.94629 -6.69222 -5.57122 -2.88423 1.99287 2.93574 3.00645 3.25555 3.52080 3.58656 3.65374 3.66400 4.64447 4.65492 4.83994 4.88145 4.97936 5.10740 5.16093 5.25601 5.33576 5.39242 5.42554 5.52936 5.56566 5.59006 5.67495 5.74713 5.76458 5.79571 5.84354 5.92283 6.01387 6.05084 6.13166 6.16126 6.19363 6.26841 6.32936 6.35555 6.39309 6.49490 6.52891 6.55367 6.65149 6.69891 6.81795 7.00324 7.05519 7.22338 7.44622 7.67915 7.70939 7.95010 7.98270 8.05282 8.37007 8.87065 9.36856 9.97663 10.62064 11.55304 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011024 B = 0.005278 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.410278 B = 5303.328253 C = 7056.612433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.127 3.873 3 N -0.308 5.308 4 N -0.484 5.484 5 H 0.433 0.567 6 C 0.082 3.918 7 C -0.091 4.091 8 C -0.210 4.210 9 C -0.026 4.026 10 H 0.089 0.911 11 C -0.146 4.146 12 C 0.524 3.476 13 O -0.520 6.520 14 N -0.595 5.595 15 C 0.105 3.895 16 C -0.123 4.123 17 C -0.101 4.101 18 H 0.073 0.927 19 C -0.144 4.144 20 C 0.179 3.821 21 N -0.588 5.588 22 C -0.207 4.207 23 H 0.082 0.918 24 C -0.007 4.007 25 N -0.927 5.927 26 Si 0.894 3.106 27 H -0.293 1.293 28 H -0.293 1.293 29 H -0.272 1.272 30 C 0.154 3.846 31 H 0.024 0.976 32 C 0.114 3.886 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.039 0.961 49 H 0.045 0.955 50 H 0.248 0.752 51 H 0.094 0.906 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.995 -4.967 3.657 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 N -0.131 5.131 4 N -0.192 5.192 5 H 0.276 0.724 6 C -0.046 4.046 7 C -0.150 4.150 8 C -0.221 4.221 9 C -0.049 4.049 10 H 0.107 0.893 11 C -0.203 4.203 12 C 0.312 3.688 13 O -0.395 6.395 14 N -0.329 5.329 15 C -0.019 4.019 16 C -0.161 4.161 17 C -0.120 4.120 18 H 0.092 0.908 19 C -0.182 4.182 20 C 0.055 3.945 21 N -0.313 5.313 22 C -0.335 4.335 23 H 0.100 0.900 24 C -0.202 4.202 25 N -0.576 5.576 26 Si 0.725 3.275 27 H -0.221 1.221 28 H -0.220 1.220 29 H -0.197 1.197 30 C 0.046 3.954 31 H 0.041 0.959 32 C -0.009 4.009 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.058 0.942 51 H 0.113 0.887 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 17.635 -2.994 3.370 18.201 hybrid contribution 0.084 0.342 -0.043 0.354 sum 17.719 -2.652 3.326 18.222 Atomic orbital electron populations 1.20584 0.86217 1.05742 1.02110 1.22180 0.97073 0.89452 0.95233 1.77315 0.86129 1.22421 1.27227 1.46041 1.07436 1.04445 1.61236 0.72405 1.20720 0.96492 0.85226 1.02179 1.20441 0.92888 0.98361 1.03273 1.19160 0.91020 0.94916 1.17040 1.19474 0.98121 0.92673 0.94605 0.89327 1.21922 1.00560 1.02576 0.95263 1.20269 0.80299 0.82209 0.86067 1.90661 1.53169 1.42056 1.53616 1.47769 1.56927 1.05481 1.22676 1.21885 0.97016 0.88331 0.94633 1.21926 0.96586 0.99605 0.97947 1.22352 0.96098 0.97430 0.96160 0.90833 1.23160 0.95451 0.99904 0.99692 1.21197 0.93688 0.83804 0.95830 1.44286 1.29061 1.05006 1.52940 1.19042 1.09508 0.82355 1.22622 0.89983 1.24652 0.98325 0.97434 0.99829 1.69958 1.20109 1.33518 1.33972 0.86349 0.78407 0.85951 0.76798 1.22067 1.21954 1.19716 1.20699 0.89013 0.90943 0.94787 0.95898 1.21344 0.92793 1.01743 0.85035 0.91461 0.91630 0.87211 0.90305 0.89672 0.91262 0.91404 0.92114 0.91009 0.92170 0.89921 0.89952 0.92275 0.92898 0.92396 0.94241 0.93696 0.94171 0.88748 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 8.55 36.00 0.31 -1.41 16 2 C 0.13 2.31 6.52 -82.41 -0.54 1.77 16 3 N -0.31 -5.38 12.70 33.67 0.43 -4.95 16 4 N -0.48 -6.40 7.36 33.47 0.25 -6.16 16 5 H 0.43 4.07 8.96 -182.61 -1.64 2.43 16 6 C 0.08 1.04 7.21 -82.27 -0.59 0.45 16 7 C -0.09 -0.72 10.06 36.00 0.36 -0.35 16 8 C -0.21 -3.27 4.49 -105.05 -0.47 -3.74 16 9 C -0.03 -0.37 2.03 -92.92 -0.19 -0.56 16 10 H 0.09 0.99 6.10 -51.93 -0.32 0.67 16 11 C -0.15 -2.02 8.62 37.16 0.32 -1.70 16 12 C 0.52 9.41 6.41 -10.99 -0.07 9.34 16 13 O -0.52 -11.45 12.44 5.56 0.07 -11.38 16 14 N -0.60 -9.84 2.96 -173.79 -0.51 -10.36 16 15 C 0.10 1.33 5.71 -3.52 -0.02 1.31 16 16 C -0.12 -1.76 5.02 -26.51 -0.13 -1.90 16 17 C -0.10 -1.59 3.68 -88.43 -0.33 -1.92 16 18 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 19 C -0.14 -2.52 6.32 -24.32 -0.15 -2.68 16 20 C 0.18 4.16 4.61 -2.74 -0.01 4.15 16 21 N -0.59 -14.09 3.20 -164.42 -0.53 -14.62 16 22 C -0.21 -5.63 9.70 -15.06 -0.15 -5.77 16 23 H 0.08 2.31 6.51 -52.49 -0.34 1.97 16 24 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 25 N -0.93 -27.06 10.38 55.49 0.58 -26.49 16 26 Si 0.89 23.02 29.55 -169.99 -5.02 18.00 16 27 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 28 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 29 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 30 C 0.15 2.98 2.97 -68.30 -0.20 2.77 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 C 0.11 2.07 5.69 -4.77 -0.03 2.04 16 33 H 0.07 1.18 8.03 -51.92 -0.42 0.77 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.11 2.44 4.82 -51.93 -0.25 2.19 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.58 7.14 -51.93 -0.37 0.20 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.87 5.76 -51.93 -0.30 0.57 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.21 6.39 -51.93 -0.33 0.87 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.90 4.29 -51.93 -0.22 0.68 16 44 H 0.08 1.49 6.85 -51.93 -0.36 1.14 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.06 0.92 7.98 -51.93 -0.41 0.50 16 48 H 0.04 1.04 7.57 -51.93 -0.39 0.65 16 49 H 0.04 1.16 7.04 -51.93 -0.37 0.79 16 50 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 51 H 0.09 2.03 5.53 -51.93 -0.29 1.74 16 52 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 385.70 15.07 5.81 5.81 Total: -1.00 -34.07 385.70 -10.28 -44.36 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -9.37 Total: 4.27 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -1.99 Total: 1.52 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.21 Total: -62.57 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.38 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.07 -10.28 -44.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085057831.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.265 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds