Wall clock time and date at job start Wed Apr 1 2020 04:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34857 * 125.95852 * 2 1 4 4 N 1.36319 * 106.68407 * 180.02562 * 3 2 1 5 5 C 1.35428 * 107.39762 * 0.03753 * 4 3 2 6 6 N 1.30090 * 108.62773 * 359.94983 * 5 4 3 7 7 C 1.51035 * 123.97871 * 179.88281 * 5 4 3 8 8 C 1.53397 * 108.20988 * 344.01336 * 7 5 4 9 9 H 1.08997 * 109.54747 * 288.89521 * 8 7 5 10 10 C 1.50694 * 109.51376 * 168.77419 * 8 7 5 11 11 O 1.21283 * 120.00363 * 240.23894 * 10 8 7 12 12 N 1.34784 * 119.99988 * 60.24013 * 10 8 7 13 13 C 1.46493 * 119.99864 * 179.72721 * 12 10 8 14 14 H 1.08999 * 109.47597 * 34.99540 * 13 12 10 15 15 C 1.53000 * 109.47099 * 274.99655 * 13 12 10 16 16 C 1.53003 * 109.47256 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46878 * 60.00350 * 16 15 13 18 18 C 1.52999 * 109.47264 * 299.99879 * 17 16 15 19 19 C 1.52996 * 109.47222 * 155.00033 * 13 12 10 20 20 H 1.08999 * 109.47237 * 59.99286 * 19 13 12 21 21 N 1.46501 * 109.46977 * 299.99833 * 19 13 12 22 22 C 1.36939 * 120.00259 * 155.00284 * 21 19 13 23 23 H 1.08010 * 119.99748 * 359.97438 * 22 21 19 24 24 C 1.38807 * 120.00300 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99880 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00287 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46924 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47198 * 119.99809 * 26 24 22 29 29 H 1.48496 * 109.47362 * 239.99941 * 26 24 22 30 30 C 1.53157 * 109.23452 * 48.84759 * 8 7 5 31 31 C 1.46471 * 127.77651 * 180.02562 * 4 3 2 32 32 H 1.09009 * 109.47184 * 270.00074 * 1 2 3 33 33 H 1.09002 * 109.47368 * 29.99381 * 1 2 3 34 34 H 1.09004 * 109.47690 * 149.99912 * 1 2 3 35 35 H 1.07996 * 126.66078 * 0.02562 * 3 2 1 36 36 H 1.09003 * 109.71879 * 224.33177 * 7 5 4 37 37 H 1.09002 * 109.71758 * 103.69347 * 7 5 4 38 38 H 0.97000 * 119.99339 * 0.02562 * 12 10 8 39 39 H 1.09005 * 109.47224 * 300.00512 * 15 13 12 40 40 H 1.09008 * 109.47230 * 60.00254 * 15 13 12 41 41 H 1.08993 * 109.47058 * 300.00032 * 16 15 13 42 42 H 1.09000 * 109.46845 * 179.97438 * 16 15 13 43 43 H 1.09003 * 109.46817 * 179.97438 * 17 16 15 44 44 H 1.08993 * 109.47536 * 59.99974 * 17 16 15 45 45 H 1.09010 * 109.46991 * 300.00553 * 18 17 16 46 46 H 1.08994 * 109.47214 * 180.02562 * 18 17 16 47 47 H 0.97005 * 120.00083 * 334.99388 * 21 19 13 48 48 H 0.96998 * 119.99849 * 180.02562 * 25 24 22 49 49 H 1.08999 * 109.46740 * 50.53157 * 30 8 7 50 50 H 1.08999 * 109.46380 * 170.52245 * 30 8 7 51 51 H 1.09004 * 109.58251 * 43.10695 * 31 4 3 52 52 H 1.09002 * 109.69461 * 282.76477 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0916 0.0000 4 7 3.5856 0.6416 -0.0006 5 6 3.5413 -0.7119 -0.0018 6 7 2.2956 -1.0869 -0.0008 7 6 4.7654 -1.5966 -0.0053 8 6 5.9736 -0.7417 -0.4084 9 1 5.9044 -0.4884 -1.4663 10 6 7.2430 -1.5142 -0.1579 11 8 8.0745 -1.0813 0.6115 12 7 7.4542 -2.6863 -0.7890 13 6 8.6909 -3.4343 -0.5500 14 1 8.9964 -3.3091 0.4888 15 6 9.7920 -2.9073 -1.4723 16 6 11.0835 -3.6890 -1.2232 17 6 10.8449 -5.1728 -1.5099 18 6 9.7438 -5.6999 -0.5876 19 6 8.4528 -4.9183 -0.8362 20 1 8.1473 -5.0435 -1.8750 21 7 7.3984 -5.4229 0.0469 22 6 6.6566 -6.5122 -0.3252 23 1 6.8486 -6.9990 -1.2701 24 6 5.6573 -6.9900 0.5113 25 7 5.4230 -6.3964 1.6624 26 14 4.6449 -8.4754 0.0034 27 1 5.1029 -8.9557 -1.3251 28 1 4.8158 -9.5573 1.0061 29 1 3.2117 -8.0946 -0.0745 30 6 5.9835 0.5428 0.4256 31 6 4.8148 1.4383 -0.0003 32 1 -0.3634 0.0000 1.0277 33 1 -0.3634 0.8900 -0.5137 34 1 -0.3634 -0.8900 -0.5138 35 1 1.9763 2.1222 0.0004 36 1 4.6320 -2.4063 -0.7228 37 1 4.9234 -2.0098 0.9909 38 1 6.7893 -3.0323 -1.4046 39 1 9.4866 -3.0325 -2.5112 40 1 9.9618 -1.8501 -1.2684 41 1 11.3891 -3.5642 -0.1844 42 1 11.8678 -3.3138 -1.8806 43 1 11.7651 -5.7296 -1.3328 44 1 10.5393 -5.2976 -2.5487 45 1 10.0494 -5.5750 0.4513 46 1 9.5741 -6.7570 -0.7916 47 1 7.2258 -4.9855 0.8954 48 1 4.7249 -6.7305 2.2472 49 1 5.8827 0.2913 1.4813 50 1 6.9230 1.0720 0.2663 51 1 4.7137 2.2657 0.7021 52 1 4.9995 1.8290 -1.0010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085243889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:12 Heat of formation + Delta-G solvation = 9.655086 kcal Electronic energy + Delta-G solvation = -31546.175462 eV Core-core repulsion = 27545.466020 eV Total energy + Delta-G solvation = -4000.709442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.33015 -39.97415 -38.13381 -36.24630 -34.07227 -33.86558 -33.22194 -31.53733 -31.13843 -29.61940 -28.75579 -27.75152 -27.03367 -24.17122 -23.73273 -23.30061 -21.77140 -21.07580 -20.45250 -20.01283 -19.40514 -19.03831 -17.31998 -16.90698 -16.74843 -16.04662 -15.78047 -15.16811 -14.96873 -14.33397 -14.22028 -14.08787 -14.00963 -13.81018 -13.65050 -13.59012 -13.39060 -12.98141 -12.94757 -12.71785 -12.50082 -12.31285 -12.13781 -12.12583 -11.84892 -11.66828 -11.27667 -11.17600 -11.07823 -10.91688 -10.85668 -10.76276 -10.57290 -10.33760 -10.12085 -9.81116 -9.77619 -9.64592 -9.50810 -9.47125 -8.90959 -8.62942 -8.14008 -6.97587 -5.76499 -3.06362 2.05090 2.73944 2.81537 3.16695 3.39042 3.44774 3.49750 3.53025 4.20027 4.37090 4.48047 4.54915 4.57792 4.86154 4.96645 5.01195 5.04448 5.09034 5.11984 5.20699 5.25307 5.34015 5.38034 5.51069 5.54086 5.64155 5.69267 5.70163 5.72572 5.79800 5.82022 5.87657 5.93530 5.95302 5.96073 6.04313 6.09383 6.10193 6.28819 6.35199 6.43973 6.44948 6.48597 6.56862 6.83373 6.83832 6.87736 7.06288 7.20183 7.69919 7.84056 8.22533 8.40450 8.48764 9.52853 10.07878 10.43085 11.45332 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008203 B = 0.003883 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3412.554598 B = 7209.565621 C =10188.863006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.005 4.005 3 C -0.062 4.062 4 N -0.459 5.459 5 C 0.223 3.777 6 N -0.480 5.480 7 C -0.025 4.025 8 C -0.110 4.110 9 H 0.100 0.900 10 C 0.524 3.476 11 O -0.547 6.547 12 N -0.703 5.703 13 C 0.140 3.860 14 H 0.084 0.916 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.120 4.120 18 C -0.133 4.133 19 C 0.173 3.827 20 H 0.050 0.950 21 N -0.721 5.721 22 C -0.243 4.243 23 H 0.070 0.930 24 C -0.007 4.007 25 N -0.926 5.926 26 Si 0.902 3.098 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.291 1.291 30 C -0.115 4.115 31 C 0.105 3.895 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.171 0.829 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.404 0.596 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.083 0.917 50 H 0.099 0.901 51 H 0.091 0.909 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 17.220 -7.020 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.134 4.134 3 C -0.195 4.195 4 N -0.142 5.142 5 C -0.040 4.040 6 N -0.199 5.199 7 C -0.064 4.064 8 C -0.132 4.132 9 H 0.118 0.882 10 C 0.309 3.691 11 O -0.425 6.425 12 N -0.352 5.352 13 C 0.035 3.965 14 H 0.102 0.898 15 C -0.163 4.163 16 C -0.152 4.152 17 C -0.158 4.158 18 C -0.174 4.174 19 C 0.063 3.937 20 H 0.068 0.932 21 N -0.362 5.362 22 C -0.374 4.374 23 H 0.088 0.912 24 C -0.203 4.203 25 N -0.574 5.574 26 Si 0.733 3.267 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.218 1.218 30 C -0.153 4.153 31 C -0.017 4.017 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.188 0.812 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.239 0.761 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.102 0.898 50 H 0.117 0.883 51 H 0.110 0.890 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.053 16.670 -6.543 18.025 hybrid contribution -0.741 -0.020 -0.177 0.762 sum 1.312 16.650 -6.719 18.003 Atomic orbital electron populations 1.19991 0.87882 1.02367 1.02009 1.20814 0.96454 0.88381 1.07763 1.22219 0.82986 1.00155 1.14115 1.45400 1.06421 1.07468 1.54931 1.23186 0.94799 0.81289 1.04745 1.70023 0.99710 1.30143 1.20047 1.20158 0.85456 0.95167 1.05594 1.21414 0.93784 0.95923 1.02099 0.88224 1.20125 0.87268 0.81508 0.80226 1.90676 1.46643 1.68920 1.36278 1.45919 1.21880 1.21195 1.46160 1.21319 0.83041 0.91984 1.00151 0.89752 1.21871 0.95128 0.99617 0.99640 1.21468 0.96603 0.95557 1.01546 1.21582 0.98894 0.95264 1.00041 1.22218 0.95372 1.00878 0.98968 1.20440 0.89331 0.88755 0.95206 0.93209 1.42402 1.37647 1.34849 1.21265 1.19208 1.10944 1.04967 1.02309 0.91228 1.24706 0.99554 0.99384 0.96703 1.69660 1.34637 1.42191 1.10903 0.86205 0.80303 0.82686 0.77479 1.20649 1.21984 1.21771 1.21717 0.97735 0.94562 1.01255 1.22009 0.82225 0.94389 1.03067 0.91626 0.91675 0.91208 0.81167 0.87591 0.88023 0.76115 0.92060 0.92025 0.91978 0.92436 0.92708 0.92401 0.92486 0.91580 0.78158 0.93504 0.89831 0.88266 0.89037 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.42 36.00 0.38 -0.33 16 2 C 0.00 -0.07 7.10 -82.72 -0.59 -0.66 16 3 C -0.06 -0.74 11.55 -16.76 -0.19 -0.93 16 4 N -0.46 -5.63 3.13 -113.75 -0.36 -5.98 16 5 C 0.22 3.40 7.65 -155.24 -1.19 2.21 16 6 N -0.48 -8.38 11.24 -6.88 -0.08 -8.46 16 7 C -0.02 -0.36 5.47 -27.51 -0.15 -0.51 16 8 C -0.11 -1.31 2.55 -91.49 -0.23 -1.55 16 9 H 0.10 1.00 8.12 -51.93 -0.42 0.58 16 10 C 0.52 7.78 7.10 -10.98 -0.08 7.70 16 11 O -0.55 -9.69 15.49 5.56 0.09 -9.61 16 12 N -0.70 -10.54 4.81 -53.81 -0.26 -10.80 16 13 C 0.14 2.24 1.98 -67.94 -0.13 2.11 16 14 H 0.08 1.56 7.57 -51.93 -0.39 1.17 16 15 C -0.12 -1.65 5.49 -26.73 -0.15 -1.79 16 16 C -0.11 -1.41 5.92 -26.73 -0.16 -1.57 16 17 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 18 C -0.13 -2.25 5.50 -26.76 -0.15 -2.40 16 19 C 0.17 3.14 2.29 -67.96 -0.16 2.98 16 20 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 21 N -0.72 -16.71 4.95 -53.45 -0.26 -16.98 16 22 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 23 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 24 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 25 N -0.93 -27.34 13.06 55.49 0.72 -26.61 16 26 Si 0.90 22.09 29.55 -169.99 -5.02 17.07 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 C -0.11 -1.19 4.67 -26.51 -0.12 -1.32 16 31 C 0.11 0.91 6.98 -3.92 -0.03 0.89 16 32 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.11 1.59 7.95 -51.93 -0.41 1.18 16 37 H 0.10 1.69 8.11 -51.93 -0.42 1.27 16 38 H 0.40 5.81 8.33 -40.82 -0.34 5.47 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.38 9.86 7.80 -40.82 -0.32 9.54 16 48 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 50 H 0.10 0.96 7.79 -51.93 -0.40 0.55 16 51 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 411.50 15.07 6.20 6.20 Total: -1.00 -32.91 411.50 -11.34 -44.25 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -9.02 Total: 14.61 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -3.35 Total: -3.69 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -0.23 Total: -68.83 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.91 -11.34 -44.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085243889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.900 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds