Wall clock time and date at job start Wed Apr 1 2020 04:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34857 * 125.95852 * 2 1 4 4 N 1.36319 * 106.68407 * 180.02562 * 3 2 1 5 5 C 1.35428 * 107.39762 * 0.03753 * 4 3 2 6 6 N 1.30090 * 108.62773 * 359.94983 * 5 4 3 7 7 C 1.51035 * 123.97871 * 179.88281 * 5 4 3 8 8 C 1.53397 * 108.20988 * 344.01336 * 7 5 4 9 9 H 1.08997 * 109.54747 * 288.89521 * 8 7 5 10 10 C 1.50694 * 109.51376 * 168.77419 * 8 7 5 11 11 O 1.21283 * 120.00363 * 240.23894 * 10 8 7 12 12 N 1.34784 * 119.99988 * 60.24013 * 10 8 7 13 13 C 1.46493 * 119.99864 * 179.72721 * 12 10 8 14 14 H 1.08999 * 109.47597 * 34.99540 * 13 12 10 15 15 C 1.53000 * 109.47099 * 274.99655 * 13 12 10 16 16 C 1.53003 * 109.47256 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46878 * 60.00350 * 16 15 13 18 18 C 1.52999 * 109.47264 * 299.99879 * 17 16 15 19 19 C 1.52996 * 109.47222 * 155.00033 * 13 12 10 20 20 H 1.08999 * 109.47237 * 59.99286 * 19 13 12 21 21 N 1.46501 * 109.46977 * 299.99833 * 19 13 12 22 22 C 1.36939 * 120.00259 * 155.00284 * 21 19 13 23 23 H 1.08010 * 119.99748 * 359.97438 * 22 21 19 24 24 C 1.38807 * 120.00300 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99880 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00287 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46924 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47198 * 119.99809 * 26 24 22 29 29 H 1.48496 * 109.47362 * 239.99941 * 26 24 22 30 30 C 1.53157 * 109.23452 * 48.84759 * 8 7 5 31 31 C 1.46471 * 127.77651 * 180.02562 * 4 3 2 32 32 H 1.09009 * 109.47184 * 270.00074 * 1 2 3 33 33 H 1.09002 * 109.47368 * 29.99381 * 1 2 3 34 34 H 1.09004 * 109.47690 * 149.99912 * 1 2 3 35 35 H 1.07996 * 126.66078 * 0.02562 * 3 2 1 36 36 H 1.09003 * 109.71879 * 224.33177 * 7 5 4 37 37 H 1.09002 * 109.71758 * 103.69347 * 7 5 4 38 38 H 0.97000 * 119.99339 * 0.02562 * 12 10 8 39 39 H 1.09005 * 109.47224 * 300.00512 * 15 13 12 40 40 H 1.09008 * 109.47230 * 60.00254 * 15 13 12 41 41 H 1.08993 * 109.47058 * 300.00032 * 16 15 13 42 42 H 1.09000 * 109.46845 * 179.97438 * 16 15 13 43 43 H 1.09003 * 109.46817 * 179.97438 * 17 16 15 44 44 H 1.08993 * 109.47536 * 59.99974 * 17 16 15 45 45 H 1.09010 * 109.46991 * 300.00553 * 18 17 16 46 46 H 1.08994 * 109.47214 * 180.02562 * 18 17 16 47 47 H 0.97005 * 120.00083 * 334.99388 * 21 19 13 48 48 H 0.96998 * 119.99849 * 180.02562 * 25 24 22 49 49 H 1.08999 * 109.46740 * 50.53157 * 30 8 7 50 50 H 1.08999 * 109.46380 * 170.52245 * 30 8 7 51 51 H 1.09004 * 109.58251 * 43.10695 * 31 4 3 52 52 H 1.09002 * 109.69461 * 282.76477 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0916 0.0000 4 7 3.5856 0.6416 -0.0006 5 6 3.5413 -0.7119 -0.0018 6 7 2.2956 -1.0869 -0.0008 7 6 4.7654 -1.5966 -0.0053 8 6 5.9736 -0.7417 -0.4084 9 1 5.9044 -0.4884 -1.4663 10 6 7.2430 -1.5142 -0.1579 11 8 8.0745 -1.0813 0.6115 12 7 7.4542 -2.6863 -0.7890 13 6 8.6909 -3.4343 -0.5500 14 1 8.9964 -3.3091 0.4888 15 6 9.7920 -2.9073 -1.4723 16 6 11.0835 -3.6890 -1.2232 17 6 10.8449 -5.1728 -1.5099 18 6 9.7438 -5.6999 -0.5876 19 6 8.4528 -4.9183 -0.8362 20 1 8.1473 -5.0435 -1.8750 21 7 7.3984 -5.4229 0.0469 22 6 6.6566 -6.5122 -0.3252 23 1 6.8486 -6.9990 -1.2701 24 6 5.6573 -6.9900 0.5113 25 7 5.4230 -6.3964 1.6624 26 14 4.6449 -8.4754 0.0034 27 1 5.1029 -8.9557 -1.3251 28 1 4.8158 -9.5573 1.0061 29 1 3.2117 -8.0946 -0.0745 30 6 5.9835 0.5428 0.4256 31 6 4.8148 1.4383 -0.0003 32 1 -0.3634 0.0000 1.0277 33 1 -0.3634 0.8900 -0.5137 34 1 -0.3634 -0.8900 -0.5138 35 1 1.9763 2.1222 0.0004 36 1 4.6320 -2.4063 -0.7228 37 1 4.9234 -2.0098 0.9909 38 1 6.7893 -3.0323 -1.4046 39 1 9.4866 -3.0325 -2.5112 40 1 9.9618 -1.8501 -1.2684 41 1 11.3891 -3.5642 -0.1844 42 1 11.8678 -3.3138 -1.8806 43 1 11.7651 -5.7296 -1.3328 44 1 10.5393 -5.2976 -2.5487 45 1 10.0494 -5.5750 0.4513 46 1 9.5741 -6.7570 -0.7916 47 1 7.2258 -4.9855 0.8954 48 1 4.7249 -6.7305 2.2472 49 1 5.8827 0.2913 1.4813 50 1 6.9230 1.0720 0.2663 51 1 4.7137 2.2657 0.7021 52 1 4.9995 1.8290 -1.0010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085243889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:11 Heat of formation + Delta-G solvation = -10.840918 kcal Electronic energy + Delta-G solvation = -31547.064236 eV Core-core repulsion = 27545.466020 eV Total energy + Delta-G solvation = -4001.598215 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.33276 -41.22697 -39.42080 -37.28040 -35.79926 -35.18563 -34.28352 -32.97550 -32.45856 -30.78646 -29.91236 -29.22747 -28.04173 -25.64760 -25.15094 -24.31460 -23.00048 -22.44276 -21.53918 -21.20387 -20.61170 -20.07722 -19.15293 -18.07433 -17.85686 -17.27017 -16.90781 -16.57531 -16.27432 -15.76051 -15.47435 -15.24227 -15.20569 -14.96392 -14.86950 -14.66254 -14.59687 -14.54314 -14.07531 -13.88608 -13.58308 -13.54221 -13.43604 -13.12145 -12.91336 -12.85833 -12.80127 -12.60957 -12.27476 -12.20059 -12.16559 -12.11572 -12.00376 -11.99594 -11.63284 -11.42346 -11.10746 -10.99193 -10.88603 -10.68027 -10.47887 -9.92409 -9.12533 -8.97332 -7.90676 -5.18457 1.07136 1.46991 1.48168 1.56922 1.58890 1.85884 2.08395 2.22138 2.57193 3.18495 3.43468 3.49542 3.51880 3.58565 3.71560 3.84295 4.01768 4.05124 4.11957 4.18178 4.25486 4.28194 4.34010 4.35051 4.44676 4.46389 4.51147 4.52917 4.61037 4.65157 4.72121 4.77085 4.85767 4.89850 4.97153 5.02613 5.03255 5.08296 5.16514 5.19389 5.25973 5.31029 5.32992 5.37662 5.48736 5.54728 5.58813 5.70027 5.89475 6.24604 6.29330 6.59563 7.19538 7.25519 7.36926 8.11378 8.34472 9.32261 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008203 B = 0.003883 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3412.554598 B = 7209.565621 C =10188.863006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.043 4.043 3 C -0.040 4.040 4 N -0.452 5.452 5 C 0.196 3.804 6 N -0.533 5.533 7 C -0.015 4.015 8 C -0.095 4.095 9 H 0.129 0.871 10 C 0.522 3.478 11 O -0.576 6.576 12 N -0.703 5.703 13 C 0.148 3.852 14 H 0.053 0.947 15 C -0.113 4.113 16 C -0.111 4.111 17 C -0.110 4.110 18 C -0.129 4.129 19 C 0.172 3.828 20 H 0.057 0.943 21 N -0.730 5.730 22 C -0.228 4.228 23 H 0.079 0.921 24 C -0.070 4.070 25 N -0.966 5.966 26 Si 0.961 3.039 27 H -0.263 1.263 28 H -0.299 1.299 29 H -0.300 1.300 30 C -0.111 4.111 31 C 0.106 3.894 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.216 0.784 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.407 0.593 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.039 0.961 46 H 0.048 0.952 47 H 0.368 0.632 48 H 0.246 0.754 49 H 0.059 0.941 50 H 0.114 0.886 51 H 0.120 0.880 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 19.803 -9.629 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.172 4.172 3 C -0.173 4.173 4 N -0.135 5.135 5 C -0.067 4.067 6 N -0.254 5.254 7 C -0.055 4.055 8 C -0.117 4.117 9 H 0.147 0.853 10 C 0.309 3.691 11 O -0.456 6.456 12 N -0.352 5.352 13 C 0.042 3.958 14 H 0.072 0.928 15 C -0.152 4.152 16 C -0.149 4.149 17 C -0.148 4.148 18 C -0.170 4.170 19 C 0.063 3.937 20 H 0.075 0.925 21 N -0.369 5.369 22 C -0.360 4.360 23 H 0.096 0.904 24 C -0.263 4.263 25 N -0.617 5.617 26 Si 0.791 3.209 27 H -0.187 1.187 28 H -0.227 1.227 29 H -0.228 1.228 30 C -0.148 4.148 31 C -0.015 4.015 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.233 0.767 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.242 0.758 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.200 0.800 48 H 0.055 0.945 49 H 0.078 0.922 50 H 0.132 0.868 51 H 0.138 0.862 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.070 19.255 -9.213 21.565 hybrid contribution -0.993 -0.794 0.639 1.423 sum 2.077 18.461 -8.574 20.460 Atomic orbital electron populations 1.20049 0.86224 1.03156 1.02424 1.21438 0.97942 0.88477 1.09321 1.22878 0.82144 1.01391 1.10883 1.45619 1.07866 1.06579 1.53435 1.23004 0.94168 0.82851 1.06690 1.69929 1.01285 1.32748 1.21397 1.19915 0.87065 0.95436 1.03065 1.21363 0.90564 0.95692 1.04090 0.85302 1.20615 0.87843 0.81341 0.79338 1.90657 1.47959 1.69665 1.37364 1.45951 1.21762 1.21249 1.46200 1.21156 0.84489 0.90800 0.99308 0.92849 1.21804 0.94318 0.99541 0.99586 1.21477 0.96802 0.94760 1.01827 1.21516 0.97922 0.95847 0.99535 1.22089 0.96023 0.99690 0.99158 1.20666 0.88508 0.90240 0.94306 0.92481 1.42568 1.38775 1.34262 1.21318 1.19573 1.09859 1.04702 1.01827 0.90358 1.25402 1.01473 1.02276 0.97115 1.69823 1.35571 1.44040 1.12297 0.85251 0.78273 0.79674 0.77667 1.18671 1.22714 1.22814 1.21690 0.99548 0.94092 0.99518 1.22314 0.79642 0.93813 1.05701 0.91362 0.88509 0.92766 0.76740 0.89104 0.91669 0.75758 0.90291 0.91968 0.92864 0.89432 0.91030 0.91005 0.94167 0.93358 0.80020 0.94514 0.92222 0.86803 0.86155 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.28 10.42 71.24 0.74 -0.53 16 2 C -0.04 -1.21 7.10 41.41 0.29 -0.91 16 3 C -0.04 -0.83 11.55 83.22 0.96 0.13 16 4 N -0.45 -10.20 3.13 -513.80 -1.61 -11.81 16 5 C 0.20 6.10 7.65 138.23 1.06 7.15 16 6 N -0.53 -19.28 11.24 -175.69 -1.98 -21.26 16 7 C -0.02 -0.47 5.47 30.09 0.16 -0.31 16 8 C -0.10 -2.24 2.55 -11.36 -0.03 -2.27 16 9 H 0.13 2.30 8.12 -2.39 -0.02 2.28 16 10 C 0.52 15.73 7.10 87.65 0.62 16.35 16 11 O -0.58 -20.74 15.49 -3.04 -0.05 -20.79 16 12 N -0.70 -21.41 4.81 -442.55 -2.13 -23.54 16 13 C 0.15 4.76 1.98 44.99 0.09 4.85 16 14 H 0.05 2.07 7.57 -2.39 -0.02 2.05 16 15 C -0.11 -2.80 5.49 30.60 0.17 -2.63 16 16 C -0.11 -2.46 5.92 30.59 0.18 -2.28 16 17 C -0.11 -2.64 5.92 30.59 0.18 -2.46 16 18 C -0.13 -4.32 5.50 30.58 0.17 -4.15 16 19 C 0.17 6.24 2.29 44.97 0.10 6.34 16 20 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 21 N -0.73 -35.03 4.95 -323.02 -1.60 -36.63 16 22 C -0.23 -12.12 9.93 84.03 0.83 -11.29 16 23 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 25 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 26 Si 0.96 46.62 29.55 68.60 2.03 48.65 16 27 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 28 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 29 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 30 C -0.11 -2.14 4.67 30.74 0.14 -2.00 16 31 C 0.11 1.46 6.98 86.47 0.60 2.07 16 32 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.22 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.09 2.97 7.95 -2.39 -0.02 2.95 16 37 H 0.06 2.43 8.11 -2.39 -0.02 2.41 16 38 H 0.41 11.89 8.33 -92.71 -0.77 11.12 16 39 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.37 19.97 7.80 -92.70 -0.72 19.25 16 48 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 49 H 0.06 1.45 8.12 -2.39 -0.02 1.43 16 50 H 0.11 1.93 7.79 -2.39 -0.02 1.91 16 51 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 52 H 0.12 0.99 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -76.60 411.50 1.12 -75.48 By element: Atomic # 1 Polarization: 45.48 SS G_CDS: -0.58 Total: 44.90 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 6.75 Total: 4.53 kcal Atomic # 7 Polarization: -145.73 SS G_CDS: -7.03 Total: -152.77 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.05 Total: -20.79 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -76.60 1.12 -75.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085243889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.639 kcal (2) G-P(sol) polarization free energy of solvation -76.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds