Wall clock time and date at job start Wed Apr 1 2020 04:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34853 * 125.96322 * 2 1 4 4 N 1.36315 * 106.68807 * 180.02562 * 3 2 1 5 5 C 1.35423 * 107.39857 * 359.94471 * 4 3 2 6 6 N 1.30086 * 108.62946 * 0.07305 * 5 4 3 7 7 C 1.51042 * 123.98168 * 180.10588 * 5 4 3 8 8 C 1.53402 * 108.21047 * 15.92435 * 7 5 4 9 9 H 1.08998 * 109.51623 * 71.11601 * 8 7 5 10 10 C 1.50703 * 109.50944 * 191.25813 * 8 7 5 11 11 O 1.21283 * 120.00349 * 119.99780 * 10 8 7 12 12 N 1.34779 * 119.99995 * 299.99804 * 10 8 7 13 13 C 1.46498 * 120.00641 * 179.97438 * 12 10 8 14 14 C 1.52990 * 109.47397 * 180.02562 * 13 12 10 15 15 H 1.09002 * 110.43817 * 305.70116 * 14 13 12 16 16 C 1.54892 * 110.48828 * 68.24491 * 14 13 12 17 17 C 1.55028 * 102.68628 * 156.51703 * 16 14 13 18 18 C 1.54272 * 104.27973 * 322.23363 * 17 16 14 19 19 H 1.08995 * 110.07492 * 142.82538 * 18 17 16 20 20 N 1.46503 * 110.03116 * 264.23527 * 18 17 16 21 21 C 1.36933 * 119.99628 * 272.16593 * 20 18 17 22 22 H 1.07997 * 120.00246 * 359.97438 * 21 20 18 23 23 C 1.38814 * 119.99907 * 180.02562 * 21 20 18 24 24 N 1.31619 * 119.99943 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00364 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47493 * 89.99453 * 25 23 21 27 27 H 1.48494 * 109.47510 * 210.00059 * 25 23 21 28 28 H 1.48506 * 109.46820 * 329.99645 * 25 23 21 29 29 C 1.53872 * 106.59876 * 23.51717 * 18 17 16 30 30 C 1.53148 * 109.23923 * 311.18369 * 8 7 5 31 31 C 1.46478 * 127.77844 * 179.67784 * 4 3 2 32 32 H 1.09004 * 109.46898 * 89.99494 * 1 2 3 33 33 H 1.08995 * 109.47004 * 209.99446 * 1 2 3 34 34 H 1.09000 * 109.46804 * 329.99915 * 1 2 3 35 35 H 1.08005 * 126.65846 * 0.03026 * 3 2 1 36 36 H 1.09006 * 109.71208 * 135.59817 * 7 5 4 37 37 H 1.08997 * 109.71736 * 256.24576 * 7 5 4 38 38 H 0.97009 * 120.00031 * 0.02562 * 12 10 8 39 39 H 1.09000 * 109.46943 * 300.00106 * 13 12 10 40 40 H 1.08997 * 109.46560 * 59.99552 * 13 12 10 41 41 H 1.08999 * 110.74966 * 274.92969 * 16 14 13 42 42 H 1.08995 * 110.75791 * 38.30129 * 16 14 13 43 43 H 1.08996 * 110.52568 * 203.48632 * 17 16 14 44 44 H 1.09005 * 110.36794 * 80.89727 * 17 16 14 45 45 H 0.97000 * 120.00110 * 92.16286 * 20 18 17 46 46 H 0.97004 * 120.00108 * 180.02562 * 24 23 21 47 47 H 1.09004 * 110.03153 * 240.72055 * 29 18 17 48 48 H 1.08991 * 110.03445 * 119.28678 * 29 18 17 49 49 H 1.08997 * 109.46865 * 189.50186 * 30 8 7 50 50 H 1.08999 * 109.46702 * 309.48676 * 30 8 7 51 51 H 1.08999 * 109.58430 * 316.94549 * 31 4 3 52 52 H 1.09000 * 109.58536 * 77.35503 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6415 -0.0006 5 6 3.5413 -0.7120 0.0003 6 7 2.2957 -1.0870 -0.0002 7 6 4.7655 -1.5968 0.0024 8 6 5.9744 -0.7416 0.4030 9 1 5.9066 -0.4881 1.4609 10 6 7.2434 -1.5142 0.1501 11 8 8.0753 -1.0793 -0.6179 12 7 7.4538 -2.6885 0.7772 13 6 8.6870 -3.4399 0.5310 14 6 8.6749 -4.7258 1.3599 15 1 8.5067 -4.4985 2.4126 16 6 7.5898 -5.6987 0.8353 17 6 8.1047 -7.0775 1.3222 18 6 9.6360 -6.9926 1.1550 19 1 10.1314 -7.5100 1.9764 20 7 10.0347 -7.5851 -0.1242 21 6 10.2941 -8.9272 -0.2056 22 1 10.2051 -9.5488 0.6731 23 6 10.6724 -9.4887 -1.4175 24 7 10.7813 -8.7311 -2.4883 25 14 11.0256 -11.3196 -1.5289 26 1 9.7748 -12.0454 -1.8666 27 1 12.0405 -11.5646 -2.5848 28 1 11.5422 -11.8043 -0.2237 29 6 9.9985 -5.4973 1.1789 30 6 5.9827 0.5427 -0.4312 31 6 4.8149 1.4381 -0.0073 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5137 34 1 -0.3633 0.8900 0.5139 35 1 1.9764 2.1222 0.0005 36 1 4.6332 -2.4058 0.7208 37 1 4.9218 -2.0106 -0.9938 38 1 6.7882 -3.0365 1.3912 39 1 8.7543 -3.6910 -0.5275 40 1 9.5458 -2.8318 0.8154 41 1 6.6196 -5.4688 1.2757 42 1 7.5380 -5.6692 -0.2530 43 1 7.6973 -7.8776 0.7043 44 1 7.8433 -7.2320 2.3691 45 1 10.1149 -7.0269 -0.9133 46 1 11.0453 -9.1235 -3.3352 47 1 10.4711 -5.2126 0.2388 48 1 10.6691 -5.2890 2.0125 49 1 6.9227 1.0717 -0.2743 50 1 5.8795 0.2910 -1.4867 51 1 4.7118 2.2630 -0.7124 52 1 5.0015 1.8305 0.9923 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086732797.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:32 Heat of formation + Delta-G solvation = 11.974929 kcal Electronic energy + Delta-G solvation = -29956.734685 eV Core-core repulsion = 25956.125839 eV Total energy + Delta-G solvation = -4000.608846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.68740 -40.19170 -38.25255 -36.70194 -34.99706 -33.81393 -33.19355 -31.86322 -30.73265 -29.50461 -28.85426 -27.72886 -27.11822 -24.77354 -24.24451 -23.23702 -22.82635 -20.94368 -20.44853 -19.80174 -19.45471 -19.14377 -17.37693 -17.24828 -17.07831 -16.39047 -16.05196 -15.73582 -15.13772 -14.85498 -14.59295 -14.47909 -14.33516 -14.19119 -14.01480 -13.66216 -13.43522 -13.23954 -13.14863 -12.84688 -12.65229 -12.60794 -12.24523 -12.19845 -12.01665 -11.70728 -11.55565 -11.40248 -11.20430 -10.82791 -10.74219 -10.58642 -10.49548 -10.26982 -10.21675 -10.19877 -10.03747 -9.84937 -9.81432 -9.61154 -9.15482 -8.86819 -8.48959 -6.92176 -5.74772 -3.03035 1.71230 2.37619 2.40747 2.79289 2.93528 3.44487 3.49695 3.51355 3.79123 4.02982 4.11882 4.13609 4.55427 4.60435 4.61667 4.65395 4.71521 4.83645 4.91781 4.94639 4.97924 5.04632 5.08708 5.23440 5.29540 5.40855 5.44473 5.55124 5.56258 5.59424 5.61889 5.71697 5.73155 5.75394 5.90582 6.00621 6.00913 6.07638 6.11396 6.20952 6.34071 6.34901 6.47135 6.50055 6.66221 6.75725 6.84375 6.91798 7.11218 7.31736 7.72700 7.83923 8.01540 8.44476 9.55090 10.14678 10.48500 11.47797 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.001863 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.064707 B =15029.287203 C =15756.307716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.004 4.004 3 C -0.056 4.056 4 N -0.456 5.456 5 C 0.213 3.787 6 N -0.483 5.483 7 C -0.024 4.024 8 C -0.112 4.112 9 H 0.104 0.896 10 C 0.519 3.481 11 O -0.536 6.536 12 N -0.722 5.722 13 C 0.125 3.875 14 C -0.103 4.103 15 H 0.074 0.926 16 C -0.113 4.113 17 C -0.146 4.146 18 C 0.174 3.826 19 H 0.048 0.952 20 N -0.720 5.720 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.121 4.121 30 C -0.116 4.116 31 C 0.104 3.896 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.173 0.827 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.401 0.599 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.072 0.928 48 H 0.060 0.940 49 H 0.102 0.898 50 H 0.083 0.917 51 H 0.095 0.905 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.940 24.428 9.608 30.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.133 4.133 3 C -0.188 4.188 4 N -0.139 5.139 5 C -0.049 4.049 6 N -0.202 5.202 7 C -0.064 4.064 8 C -0.134 4.134 9 H 0.122 0.878 10 C 0.304 3.696 11 O -0.412 6.412 12 N -0.373 5.373 13 C 0.002 3.998 14 C -0.122 4.122 15 H 0.092 0.908 16 C -0.151 4.151 17 C -0.187 4.187 18 C 0.064 3.936 19 H 0.066 0.934 20 N -0.362 5.362 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.160 4.160 30 C -0.154 4.154 31 C -0.018 4.018 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.191 0.809 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.235 0.765 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.121 0.879 50 H 0.102 0.898 51 H 0.113 0.887 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.401 23.847 9.068 29.801 hybrid contribution 0.127 -0.086 -0.086 0.176 sum -15.273 23.761 8.981 29.640 Atomic orbital electron populations 1.20008 0.87651 1.02546 1.02144 1.20822 0.96517 0.88268 1.07726 1.22301 0.82823 1.00387 1.13321 1.45381 1.06585 1.07411 1.54572 1.23040 0.94652 0.81530 1.05720 1.69963 0.99612 1.30422 1.20208 1.20134 0.86006 0.95433 1.04784 1.21438 0.93250 0.96086 1.02607 0.87780 1.20210 0.87612 0.81341 0.80475 1.90739 1.46256 1.68518 1.35708 1.46064 1.22689 1.21749 1.46769 1.21563 0.85585 0.91799 1.00821 1.22239 0.97788 0.93442 0.98769 0.90763 1.22524 0.96191 0.95388 1.00971 1.23145 0.99689 0.96611 0.99211 1.20800 0.91920 0.90673 0.90236 0.93391 1.42541 1.81170 1.06631 1.05818 1.19254 1.38109 0.84949 0.94679 0.91231 1.24742 1.02654 0.97819 0.95838 1.69661 1.54426 1.34256 0.99748 0.86213 0.77595 0.85433 0.77084 1.21783 1.21840 1.20819 1.22466 0.95241 0.96202 1.02096 1.21710 0.98121 0.94473 1.01133 1.22027 0.81941 0.94425 1.03420 0.91510 0.91182 0.91483 0.80932 0.88001 0.88440 0.76506 0.90817 0.91571 0.92890 0.91274 0.90936 0.93359 0.78273 0.93548 0.90905 0.92079 0.87947 0.89783 0.88709 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.42 36.01 0.38 -0.11 16 2 C 0.00 -0.04 7.10 -82.72 -0.59 -0.63 16 3 C -0.06 -0.46 11.55 -16.76 -0.19 -0.66 16 4 N -0.46 -3.83 3.14 -113.82 -0.36 -4.18 16 5 C 0.21 2.20 7.65 -155.24 -1.19 1.02 16 6 N -0.48 -6.03 11.24 -6.88 -0.08 -6.10 16 7 C -0.02 -0.20 5.46 -27.51 -0.15 -0.35 16 8 C -0.11 -0.82 2.55 -91.49 -0.23 -1.05 16 9 H 0.10 0.59 8.12 -51.93 -0.42 0.17 16 10 C 0.52 5.41 7.13 -10.98 -0.08 5.33 16 11 O -0.54 -7.76 15.83 5.56 0.09 -7.67 16 12 N -0.72 -6.92 5.32 -60.30 -0.32 -7.24 16 13 C 0.13 1.50 4.96 -4.05 -0.02 1.48 16 14 C -0.10 -1.26 2.90 -88.96 -0.26 -1.52 16 15 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.11 -1.56 6.11 -24.66 -0.15 -1.71 16 17 C -0.15 -2.45 6.54 -24.99 -0.16 -2.61 16 18 C 0.17 3.32 3.56 -66.81 -0.24 3.08 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 N -0.72 -17.67 5.08 -52.34 -0.27 -17.93 16 21 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 25 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 C -0.12 -1.86 6.14 -25.61 -0.16 -2.02 16 30 C -0.12 -0.79 4.66 -26.58 -0.12 -0.91 16 31 C 0.10 0.55 6.98 -3.98 -0.03 0.52 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.17 0.88 8.06 -52.48 -0.42 0.45 16 36 H 0.10 0.73 7.94 -51.93 -0.41 0.32 16 37 H 0.10 0.89 8.11 -51.93 -0.42 0.47 16 38 H 0.40 2.90 8.09 -40.82 -0.33 2.57 16 39 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.09 7.99 -51.93 -0.42 0.68 16 43 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.38 10.06 7.52 -40.82 -0.31 9.75 16 46 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.07 1.24 7.31 -51.93 -0.38 0.86 16 48 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.10 0.67 7.79 -51.93 -0.40 0.27 16 50 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 51 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 52 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 414.50 15.07 6.25 6.25 Total: -1.00 -34.89 414.50 -11.39 -46.28 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -8.96 Total: 8.03 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -3.44 Total: -7.35 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.30 Total: -62.93 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.09 Total: -7.67 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.89 -11.39 -46.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086732797.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.250 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds