Wall clock time and date at job start Wed Apr 1 2020 04:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34853 * 125.96322 * 2 1 4 4 N 1.36315 * 106.68807 * 180.02562 * 3 2 1 5 5 C 1.35423 * 107.39857 * 359.94471 * 4 3 2 6 6 N 1.30086 * 108.62946 * 0.07305 * 5 4 3 7 7 C 1.51042 * 123.98168 * 180.10588 * 5 4 3 8 8 C 1.53402 * 108.21047 * 15.92435 * 7 5 4 9 9 H 1.08998 * 109.51623 * 71.11601 * 8 7 5 10 10 C 1.50703 * 109.50944 * 191.25813 * 8 7 5 11 11 O 1.21283 * 120.00349 * 119.99780 * 10 8 7 12 12 N 1.34779 * 119.99995 * 299.99804 * 10 8 7 13 13 C 1.46498 * 120.00641 * 179.97438 * 12 10 8 14 14 C 1.52990 * 109.47397 * 180.02562 * 13 12 10 15 15 H 1.09002 * 110.43817 * 305.70116 * 14 13 12 16 16 C 1.54892 * 110.48828 * 68.24491 * 14 13 12 17 17 C 1.55028 * 102.68628 * 156.51703 * 16 14 13 18 18 C 1.54272 * 104.27973 * 322.23363 * 17 16 14 19 19 H 1.08995 * 110.07492 * 142.82538 * 18 17 16 20 20 N 1.46503 * 110.03116 * 264.23527 * 18 17 16 21 21 C 1.36933 * 119.99628 * 272.16593 * 20 18 17 22 22 H 1.07997 * 120.00246 * 359.97438 * 21 20 18 23 23 C 1.38814 * 119.99907 * 180.02562 * 21 20 18 24 24 N 1.31619 * 119.99943 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00364 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47493 * 89.99453 * 25 23 21 27 27 H 1.48494 * 109.47510 * 210.00059 * 25 23 21 28 28 H 1.48506 * 109.46820 * 329.99645 * 25 23 21 29 29 C 1.53872 * 106.59876 * 23.51717 * 18 17 16 30 30 C 1.53148 * 109.23923 * 311.18369 * 8 7 5 31 31 C 1.46478 * 127.77844 * 179.67784 * 4 3 2 32 32 H 1.09004 * 109.46898 * 89.99494 * 1 2 3 33 33 H 1.08995 * 109.47004 * 209.99446 * 1 2 3 34 34 H 1.09000 * 109.46804 * 329.99915 * 1 2 3 35 35 H 1.08005 * 126.65846 * 0.03026 * 3 2 1 36 36 H 1.09006 * 109.71208 * 135.59817 * 7 5 4 37 37 H 1.08997 * 109.71736 * 256.24576 * 7 5 4 38 38 H 0.97009 * 120.00031 * 0.02562 * 12 10 8 39 39 H 1.09000 * 109.46943 * 300.00106 * 13 12 10 40 40 H 1.08997 * 109.46560 * 59.99552 * 13 12 10 41 41 H 1.08999 * 110.74966 * 274.92969 * 16 14 13 42 42 H 1.08995 * 110.75791 * 38.30129 * 16 14 13 43 43 H 1.08996 * 110.52568 * 203.48632 * 17 16 14 44 44 H 1.09005 * 110.36794 * 80.89727 * 17 16 14 45 45 H 0.97000 * 120.00110 * 92.16286 * 20 18 17 46 46 H 0.97004 * 120.00108 * 180.02562 * 24 23 21 47 47 H 1.09004 * 110.03153 * 240.72055 * 29 18 17 48 48 H 1.08991 * 110.03445 * 119.28678 * 29 18 17 49 49 H 1.08997 * 109.46865 * 189.50186 * 30 8 7 50 50 H 1.08999 * 109.46702 * 309.48676 * 30 8 7 51 51 H 1.08999 * 109.58430 * 316.94549 * 31 4 3 52 52 H 1.09000 * 109.58536 * 77.35503 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6415 -0.0006 5 6 3.5413 -0.7120 0.0003 6 7 2.2957 -1.0870 -0.0002 7 6 4.7655 -1.5968 0.0024 8 6 5.9744 -0.7416 0.4030 9 1 5.9066 -0.4881 1.4609 10 6 7.2434 -1.5142 0.1501 11 8 8.0753 -1.0793 -0.6179 12 7 7.4538 -2.6885 0.7772 13 6 8.6870 -3.4399 0.5310 14 6 8.6749 -4.7258 1.3599 15 1 8.5067 -4.4985 2.4126 16 6 7.5898 -5.6987 0.8353 17 6 8.1047 -7.0775 1.3222 18 6 9.6360 -6.9926 1.1550 19 1 10.1314 -7.5100 1.9764 20 7 10.0347 -7.5851 -0.1242 21 6 10.2941 -8.9272 -0.2056 22 1 10.2051 -9.5488 0.6731 23 6 10.6724 -9.4887 -1.4175 24 7 10.7813 -8.7311 -2.4883 25 14 11.0256 -11.3196 -1.5289 26 1 9.7748 -12.0454 -1.8666 27 1 12.0405 -11.5646 -2.5848 28 1 11.5422 -11.8043 -0.2237 29 6 9.9985 -5.4973 1.1789 30 6 5.9827 0.5427 -0.4312 31 6 4.8149 1.4381 -0.0073 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5137 34 1 -0.3633 0.8900 0.5139 35 1 1.9764 2.1222 0.0005 36 1 4.6332 -2.4058 0.7208 37 1 4.9218 -2.0106 -0.9938 38 1 6.7882 -3.0365 1.3912 39 1 8.7543 -3.6910 -0.5275 40 1 9.5458 -2.8318 0.8154 41 1 6.6196 -5.4688 1.2757 42 1 7.5380 -5.6692 -0.2530 43 1 7.6973 -7.8776 0.7043 44 1 7.8433 -7.2320 2.3691 45 1 10.1149 -7.0269 -0.9133 46 1 11.0453 -9.1235 -3.3352 47 1 10.4711 -5.2126 0.2388 48 1 10.6691 -5.2890 2.0125 49 1 6.9227 1.0717 -0.2743 50 1 5.8795 0.2910 -1.4867 51 1 4.7118 2.2630 -0.7124 52 1 5.0015 1.8305 0.9923 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086732797.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:31 Heat of formation + Delta-G solvation = -10.340268 kcal Electronic energy + Delta-G solvation = -29957.702345 eV Core-core repulsion = 25956.125839 eV Total energy + Delta-G solvation = -4001.576506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.32644 -41.06562 -39.51318 -37.38889 -36.27773 -35.01364 -34.31806 -32.50396 -32.41769 -30.50859 -29.79009 -28.87375 -28.09117 -25.93523 -25.13530 -24.81545 -23.61067 -21.72903 -21.29149 -20.91412 -20.53790 -20.07651 -19.12695 -18.12712 -17.86103 -17.28517 -16.86515 -16.66143 -16.46382 -16.19627 -15.65647 -15.34046 -15.17904 -15.07512 -15.00047 -14.81090 -14.56676 -14.31452 -14.19456 -13.84113 -13.57845 -13.41321 -13.12997 -13.10383 -12.95591 -12.83203 -12.59678 -12.47503 -12.37639 -12.25745 -12.14919 -12.13454 -11.92304 -11.68264 -11.61041 -11.48104 -11.38300 -10.94946 -10.89375 -10.83412 -10.46423 -10.08302 -9.12719 -8.95443 -7.92876 -5.20038 1.08400 1.46226 1.47812 1.54668 1.56069 1.86050 2.08237 2.13090 2.57047 3.15565 3.39075 3.48816 3.51004 3.58869 3.70089 3.82135 3.86729 3.99115 4.07689 4.14546 4.22161 4.25761 4.35484 4.44438 4.47808 4.52062 4.57562 4.62608 4.65403 4.70722 4.74325 4.81764 4.85685 4.87444 4.91439 4.97881 5.04087 5.07402 5.10633 5.17297 5.17871 5.24736 5.38564 5.40264 5.46385 5.52821 5.60677 5.68645 5.89022 6.24629 6.30766 6.53559 7.16697 7.21995 7.35281 8.16146 8.36475 9.30761 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.001863 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.064707 B =15029.287203 C =15756.307716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.455 5.455 5 C 0.195 3.805 6 N -0.526 5.526 7 C -0.020 4.020 8 C -0.097 4.097 9 H 0.132 0.868 10 C 0.519 3.481 11 O -0.580 6.580 12 N -0.710 5.710 13 C 0.133 3.867 14 C -0.083 4.083 15 H 0.111 0.889 16 C -0.107 4.107 17 C -0.140 4.140 18 C 0.160 3.840 19 H 0.044 0.956 20 N -0.734 5.734 21 C -0.235 4.235 22 H 0.075 0.925 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.970 3.030 26 H -0.289 1.289 27 H -0.298 1.298 28 H -0.268 1.268 29 C -0.117 4.117 30 C -0.115 4.115 31 C 0.106 3.894 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.207 0.793 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.416 0.584 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.040 0.960 43 H 0.036 0.964 44 H 0.077 0.923 45 H 0.370 0.630 46 H 0.249 0.751 47 H 0.049 0.951 48 H 0.082 0.918 49 H 0.106 0.894 50 H 0.063 0.937 51 H 0.114 0.886 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.092 26.337 12.407 33.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.168 4.168 3 C -0.179 4.179 4 N -0.138 5.138 5 C -0.068 4.068 6 N -0.247 5.247 7 C -0.059 4.059 8 C -0.119 4.119 9 H 0.150 0.850 10 C 0.306 3.694 11 O -0.459 6.459 12 N -0.362 5.362 13 C 0.009 3.991 14 C -0.102 4.102 15 H 0.129 0.871 16 C -0.144 4.144 17 C -0.180 4.180 18 C 0.052 3.948 19 H 0.062 0.938 20 N -0.374 5.374 21 C -0.367 4.367 22 H 0.093 0.907 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.800 3.200 26 H -0.217 1.217 27 H -0.225 1.225 28 H -0.193 1.193 29 C -0.156 4.156 30 C -0.153 4.153 31 C -0.015 4.015 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.224 0.776 36 H 0.131 0.869 37 H 0.099 0.901 38 H 0.253 0.747 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.096 0.904 45 H 0.202 0.798 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.101 0.899 49 H 0.124 0.876 50 H 0.081 0.919 51 H 0.132 0.868 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.583 25.758 11.947 32.882 hybrid contribution 0.464 -0.639 -0.911 1.206 sum -16.119 25.119 11.036 31.821 Atomic orbital electron populations 1.20045 0.86368 1.03167 1.02418 1.21362 0.97794 0.88560 1.09064 1.22831 0.82421 1.01406 1.11223 1.45594 1.07564 1.07037 1.53568 1.23222 0.94518 0.82679 1.06340 1.69897 1.00954 1.32222 1.21590 1.20105 0.85856 0.95719 1.04255 1.21371 0.90707 0.95529 1.04256 0.85009 1.20739 0.88051 0.81233 0.79407 1.90727 1.48026 1.69608 1.37569 1.45914 1.22191 1.21308 1.46776 1.21286 0.86805 0.92010 0.98963 1.22107 0.95026 0.92422 1.00653 0.87077 1.22469 0.98438 0.94036 0.99471 1.22982 0.97442 0.97192 1.00383 1.21155 0.93459 0.92672 0.87498 0.93834 1.42764 1.81507 1.05764 1.07381 1.19651 1.36001 0.86404 0.94622 0.90686 1.25548 1.03934 1.02041 0.95785 1.69827 1.56534 1.35890 1.00047 0.85175 0.77055 0.80535 0.77242 1.21661 1.22459 1.19325 1.22376 0.97352 0.93994 1.01838 1.21676 0.99131 0.94585 0.99883 1.22236 0.79904 0.93934 1.05431 0.91376 0.92315 0.89088 0.77591 0.86871 0.90088 0.74675 0.93950 0.91532 0.89323 0.94138 0.94522 0.90395 0.79836 0.94257 0.93207 0.89918 0.87553 0.91853 0.86758 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.86 10.42 71.24 0.74 -0.12 16 2 C -0.04 -0.77 7.10 41.40 0.29 -0.48 16 3 C -0.05 -0.65 11.55 83.22 0.96 0.31 16 4 N -0.45 -6.60 3.14 -514.02 -1.61 -8.21 16 5 C 0.20 3.83 7.65 138.23 1.06 4.89 16 6 N -0.53 -12.97 11.24 -175.69 -1.98 -14.95 16 7 C -0.02 -0.31 5.46 30.09 0.16 -0.15 16 8 C -0.10 -1.22 2.55 -11.35 -0.03 -1.25 16 9 H 0.13 1.00 8.12 -2.39 -0.02 0.98 16 10 C 0.52 10.21 7.13 87.66 0.63 10.84 16 11 O -0.58 -16.78 15.83 -3.04 -0.05 -16.83 16 12 N -0.71 -12.25 5.32 -463.08 -2.47 -14.71 16 13 C 0.13 3.07 4.96 86.38 0.43 3.49 16 14 C -0.08 -1.84 2.90 -9.72 -0.03 -1.87 16 15 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 16 C -0.11 -2.76 6.11 31.93 0.20 -2.56 16 17 C -0.14 -4.53 6.54 31.72 0.21 -4.32 16 18 C 0.16 6.06 3.56 45.72 0.16 6.22 16 19 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 20 N -0.73 -37.02 5.08 -319.51 -1.62 -38.65 16 21 C -0.23 -13.13 9.96 84.03 0.84 -12.29 16 22 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 23 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 24 N -0.97 -60.81 13.06 21.65 0.28 -60.53 16 25 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 27 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 28 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 29 C -0.12 -3.48 6.14 31.32 0.19 -3.28 16 30 C -0.11 -1.36 4.66 30.69 0.14 -1.21 16 31 C 0.11 0.80 6.98 86.43 0.60 1.40 16 32 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.21 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.11 1.43 7.94 -2.38 -0.02 1.41 16 37 H 0.08 1.51 8.11 -2.39 -0.02 1.49 16 38 H 0.42 4.63 8.09 -92.70 -0.75 3.88 16 39 H 0.04 1.26 8.06 -2.39 -0.02 1.24 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.04 1.29 7.99 -2.39 -0.02 1.27 16 43 H 0.04 1.45 8.04 -2.39 -0.02 1.43 16 44 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 45 H 0.37 20.35 7.52 -92.71 -0.70 19.65 16 46 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 47 H 0.05 1.73 7.31 -2.39 -0.02 1.71 16 48 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.11 1.21 7.79 -2.39 -0.02 1.19 16 50 H 0.06 1.02 8.12 -2.39 -0.02 1.00 16 51 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 52 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -80.13 414.50 1.08 -79.05 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -0.53 Total: 30.48 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 7.02 Total: -4.66 kcal Atomic # 7 Polarization: -129.65 SS G_CDS: -7.39 Total: -137.04 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.05 Total: -16.83 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -80.13 1.08 -79.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086732797.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.710 kcal (2) G-P(sol) polarization free energy of solvation -80.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds