Wall clock time and date at job start Wed Apr 1 2020 03:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35312 * 126.12546 * 2 1 4 4 C 1.39870 * 107.92163 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.90354 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47488 * 124.99555 * 5 4 3 7 7 O 1.21279 * 119.99567 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00216 * 180.02562 * 6 5 4 9 9 C 1.47581 * 125.62742 * 359.97438 * 8 6 5 10 10 C 1.54116 * 104.78455 * 203.32556 * 9 8 6 11 11 C 1.54397 * 102.47369 * 323.92276 * 10 9 8 12 12 C 1.47079 * 125.63138 * 180.02562 * 8 6 5 13 13 H 1.08995 * 110.00463 * 59.50675 * 12 8 6 14 14 C 1.53005 * 109.87342 * 298.43214 * 12 8 6 15 15 C 1.52105 * 110.69250 * 206.07752 * 10 9 8 16 16 C 1.53327 * 109.49285 * 295.38651 * 15 10 9 17 17 N 1.46937 * 108.69816 * 306.72309 * 16 15 10 18 18 C 1.36938 * 120.58099 * 234.38685 * 17 16 15 19 19 H 1.07996 * 119.99602 * 151.63040 * 18 17 16 20 20 C 1.38812 * 119.99774 * 331.63801 * 18 17 16 21 21 N 1.31619 * 119.99779 * 342.92744 * 20 18 17 22 22 Si 1.86796 * 119.99762 * 162.93488 * 20 18 17 23 23 H 1.48500 * 109.47341 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47171 * 119.99994 * 22 20 18 25 25 H 1.48507 * 109.46732 * 239.99584 * 22 20 18 26 26 C 1.46941 * 118.84127 * 54.40590 * 17 16 15 27 27 C 1.52097 * 110.68744 * 81.76684 * 10 9 8 28 28 N 1.30843 * 108.20085 * 0.26198 * 4 3 2 29 29 N 1.34951 * 126.12509 * 180.02562 * 2 1 3 30 30 H 0.96994 * 126.03867 * 359.95902 * 29 2 1 31 31 H 1.08997 * 109.47495 * 89.99918 * 1 2 3 32 32 H 1.09004 * 109.47141 * 210.00154 * 1 2 3 33 33 H 1.09004 * 109.47549 * 329.99613 * 1 2 3 34 34 H 1.08000 * 126.04457 * 0.05625 * 3 2 1 35 35 H 1.09002 * 109.46719 * 4.99860 * 5 4 3 36 36 H 1.08998 * 109.47603 * 245.00068 * 5 4 3 37 37 H 1.09005 * 110.36875 * 84.50056 * 9 8 6 38 38 H 1.08999 * 110.37638 * 322.15770 * 9 8 6 39 39 H 1.09002 * 110.73296 * 152.98981 * 11 10 9 40 40 H 1.08995 * 110.72982 * 276.11329 * 11 10 9 41 41 H 1.08999 * 109.47243 * 302.16164 * 14 12 8 42 42 H 1.08999 * 109.47483 * 62.16585 * 14 12 8 43 43 H 1.09004 * 109.46955 * 182.16577 * 14 12 8 44 44 H 1.09004 * 109.46569 * 175.38093 * 15 10 9 45 45 H 1.08998 * 109.46916 * 55.39563 * 15 10 9 46 46 H 1.08995 * 109.59828 * 66.48288 * 16 15 10 47 47 H 1.09001 * 109.60080 * 186.80136 * 16 15 10 48 48 H 0.97000 * 119.99815 * 180.02562 * 21 20 18 49 49 H 1.09007 * 109.60123 * 65.34564 * 26 17 16 50 50 H 1.08999 * 109.60108 * 185.66292 * 26 17 16 51 51 H 1.08997 * 109.46445 * 304.60069 * 27 10 9 52 52 H 1.09001 * 109.46744 * 184.60637 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6560 -0.0006 5 6 4.8542 1.5395 -0.0003 6 6 5.7392 1.1731 1.1632 7 8 5.4111 0.2819 1.9176 8 7 6.8953 1.8357 1.3655 9 6 7.4136 2.9354 0.5287 10 6 8.9348 2.9341 0.7757 11 6 9.0296 2.5602 2.2707 12 6 7.8491 1.5817 2.4559 13 1 8.2079 0.5538 2.4055 14 6 7.1740 1.8312 3.8061 15 6 9.5197 4.3173 0.5342 16 6 9.3558 4.6912 -0.9437 17 7 9.9261 3.6165 -1.7675 18 6 10.8806 3.8927 -2.7097 19 1 11.6072 3.1404 -2.9789 20 6 10.9143 5.1397 -3.3186 21 7 9.8639 5.9304 -3.2576 22 14 12.4504 5.6952 -4.2248 23 1 13.4830 4.6309 -4.1474 24 1 12.1173 5.9599 -5.6476 25 1 12.9721 6.9370 -3.5993 26 6 9.4540 2.2401 -1.5629 27 6 9.6175 1.8795 -0.0816 28 7 3.6333 -0.6524 -0.0066 29 7 2.3026 -1.0900 -0.0005 30 1 2.0055 -2.0134 -0.0003 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.9740 2.1211 0.0009 35 1 4.5483 2.5818 0.0901 36 1 5.4030 1.4014 -0.9318 37 1 6.9794 3.8857 0.8394 38 1 7.1997 2.7452 -0.5231 39 1 9.9772 2.0662 2.4856 40 1 8.9055 3.4431 2.8978 41 1 6.8020 2.8551 3.8427 42 1 6.3422 1.1378 3.9301 43 1 7.8969 1.6784 4.6075 44 1 10.5785 4.3142 0.7930 45 1 8.9966 5.0461 1.1535 46 1 8.2973 4.8076 -1.1762 47 1 9.8793 5.6260 -1.1446 48 1 9.8874 6.8017 -3.6834 49 1 8.4028 2.1687 -1.8427 50 1 10.0425 1.5568 -2.1751 51 1 9.1629 0.9072 0.1080 52 1 10.6779 1.8395 0.1675 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086915722.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:46 Heat of formation + Delta-G solvation = 33.301987 kcal Electronic energy + Delta-G solvation = -31612.737265 eV Core-core repulsion = 27613.053230 eV Total energy + Delta-G solvation = -3999.684035 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.26662 -41.61251 -39.65174 -37.48192 -34.72816 -34.42816 -33.11616 -32.56090 -32.24720 -31.48578 -29.50422 -28.67375 -27.81387 -26.80244 -25.95592 -24.08105 -23.35271 -22.42006 -21.53203 -20.86291 -20.10878 -19.37769 -18.40513 -18.30512 -17.97476 -17.03588 -16.80686 -16.29910 -15.75561 -15.60145 -15.50712 -15.36997 -14.88064 -14.78172 -14.65178 -14.54594 -14.37316 -14.08705 -13.89902 -13.76584 -13.55569 -13.36196 -13.24167 -13.14961 -12.97459 -12.95064 -12.85725 -12.72857 -12.55671 -12.34300 -12.20242 -11.92554 -11.86369 -11.77104 -11.51805 -11.39116 -11.03928 -10.91438 -10.79726 -10.45205 -10.24991 -9.59235 -9.51732 -8.58017 -7.81947 -5.25969 0.94563 1.47822 1.51026 1.60136 1.65537 1.67459 1.97897 2.17107 2.55016 3.31101 3.44665 3.57246 3.59999 3.75458 3.80656 3.88818 4.02152 4.16928 4.17844 4.28134 4.36229 4.40912 4.44580 4.48557 4.59189 4.62182 4.70879 4.74585 4.77588 4.79614 4.82232 4.85671 4.86552 4.96232 5.00592 5.10292 5.11838 5.15344 5.25548 5.26577 5.29775 5.36825 5.42701 5.46521 5.49488 5.61826 5.67218 5.72501 5.89130 6.46078 6.48015 6.56199 6.76250 7.21104 7.22546 7.94027 8.44312 9.23343 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013142 B = 0.002760 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.084756 B =10142.973431 C =11525.162922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.090 3.910 3 C -0.287 4.287 4 C 0.076 3.924 5 C -0.057 4.057 6 C 0.532 3.468 7 O -0.568 6.568 8 N -0.609 5.609 9 C 0.112 3.888 10 C -0.053 4.053 11 C -0.108 4.108 12 C 0.135 3.865 13 H 0.060 0.940 14 C -0.151 4.151 15 C -0.111 4.111 16 C 0.176 3.824 17 N -0.607 5.607 18 C -0.259 4.259 19 H 0.059 0.941 20 C -0.046 4.046 21 N -0.929 5.929 22 Si 0.959 3.041 23 H -0.271 1.271 24 H -0.295 1.295 25 H -0.289 1.289 26 C 0.144 3.856 27 C -0.104 4.104 28 N -0.315 5.315 29 N -0.475 5.475 30 H 0.446 0.554 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.166 0.834 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.041 0.959 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.007 0.993 47 H 0.051 0.949 48 H 0.249 0.751 49 H 0.017 0.983 50 H 0.043 0.957 51 H 0.060 0.940 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.442 -7.561 11.595 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C -0.316 4.316 4 C -0.091 4.091 5 C -0.098 4.098 6 C 0.321 3.679 7 O -0.447 6.447 8 N -0.342 5.342 9 C -0.011 4.011 10 C -0.054 4.054 11 C -0.146 4.146 12 C 0.032 3.968 13 H 0.078 0.922 14 C -0.209 4.209 15 C -0.150 4.150 16 C 0.050 3.950 17 N -0.330 5.330 18 C -0.389 4.389 19 H 0.077 0.923 20 C -0.242 4.242 21 N -0.575 5.575 22 Si 0.788 3.212 23 H -0.196 1.196 24 H -0.222 1.222 25 H -0.216 1.216 26 C 0.018 3.982 27 C -0.143 4.143 28 N -0.138 5.138 29 N -0.185 5.185 30 H 0.292 0.708 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.184 0.816 35 H 0.154 0.846 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.025 0.975 47 H 0.070 0.930 48 H 0.058 0.942 49 H 0.034 0.966 50 H 0.062 0.938 51 H 0.078 0.922 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.981 -8.981 11.901 21.136 hybrid contribution 0.321 0.568 -0.973 1.172 sum -14.660 -8.413 10.927 20.127 Atomic orbital electron populations 1.20600 0.83932 1.05318 1.04742 1.21762 0.96415 0.86821 0.98899 1.21447 0.90670 1.00777 1.18718 1.21812 0.95714 0.91534 1.00049 1.20104 0.91378 1.00424 0.97939 1.20300 0.80608 0.80820 0.86213 1.90676 1.73267 1.31950 1.48797 1.48673 1.20205 1.35946 1.29418 1.22439 0.93834 0.89700 0.95083 1.20858 0.93395 0.95995 0.95103 1.22751 0.97356 0.99295 0.95175 1.21607 0.89078 0.99068 0.87057 0.92209 1.22037 1.01002 1.01716 0.96139 1.21838 1.00461 0.94927 0.97800 1.20659 0.95090 0.91647 0.87564 1.44277 1.45816 1.02852 1.40090 1.19460 1.05568 0.98925 1.14950 0.92307 1.25665 0.99414 0.99372 0.99719 1.70157 1.28516 1.10645 1.48202 0.85336 0.80302 0.77929 0.77634 1.19587 1.22179 1.21592 1.21035 0.96158 0.86309 0.94684 1.21648 1.00042 0.97137 0.95505 1.77320 0.97799 1.13468 1.25248 1.46370 1.03445 1.09200 1.59533 0.70844 0.88606 0.89568 0.88300 0.81615 0.84605 0.87044 0.89919 0.90911 0.89194 0.88793 0.91991 0.93960 0.89949 0.92622 0.90450 0.97494 0.93014 0.94158 0.96560 0.93800 0.92166 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 10.43 71.23 0.74 0.00 16 2 C 0.09 1.70 7.21 41.40 0.30 1.99 16 3 C -0.29 -6.48 10.64 21.99 0.23 -6.24 16 4 C 0.08 2.16 6.01 43.10 0.26 2.41 16 5 C -0.06 -1.49 5.29 29.10 0.15 -1.33 16 6 C 0.53 16.36 7.63 87.66 0.67 17.02 16 7 O -0.57 -21.45 14.61 -3.03 -0.04 -21.49 16 8 N -0.61 -16.69 3.06 -788.83 -2.41 -19.11 16 9 C 0.11 3.01 4.68 86.55 0.40 3.42 16 10 C -0.05 -1.48 0.54 -51.92 -0.03 -1.51 16 11 C -0.11 -2.41 5.42 31.56 0.17 -2.24 16 12 C 0.13 3.37 3.10 45.37 0.14 3.52 16 13 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 14 C -0.15 -3.44 9.10 71.98 0.65 -2.79 16 15 C -0.11 -3.58 4.83 30.41 0.15 -3.44 16 16 C 0.18 7.69 5.06 86.41 0.44 8.13 16 17 N -0.61 -28.84 2.98 -698.50 -2.08 -30.92 16 18 C -0.26 -13.86 9.57 84.03 0.80 -13.06 16 19 H 0.06 3.15 7.89 -2.91 -0.02 3.12 16 20 C -0.05 -2.50 4.91 84.86 0.42 -2.08 16 21 N -0.93 -52.91 11.20 21.65 0.24 -52.67 16 22 Si 0.96 44.11 29.59 68.60 2.03 46.14 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 26 C 0.14 5.73 6.21 86.41 0.54 6.26 16 27 C -0.10 -3.33 4.83 30.41 0.15 -3.18 16 28 N -0.31 -9.87 12.06 -47.39 -0.57 -10.45 16 29 N -0.48 -10.64 7.36 -48.01 -0.35 -10.99 16 30 H 0.45 7.00 8.96 -213.33 -1.91 5.09 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.17 2.87 8.06 -2.91 -0.02 2.84 16 35 H 0.14 2.74 8.12 -2.39 -0.02 2.72 16 36 H 0.11 2.85 7.86 -2.39 -0.02 2.83 16 37 H 0.08 2.03 7.97 -2.38 -0.02 2.02 16 38 H 0.07 2.17 5.58 -2.39 -0.01 2.16 16 39 H 0.09 1.85 8.01 -2.39 -0.02 1.84 16 40 H 0.09 1.82 7.70 -2.39 -0.02 1.80 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 42 H 0.04 1.18 6.90 -2.39 -0.02 1.16 16 43 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.08 2.12 8.09 -2.39 -0.02 2.10 16 46 H 0.01 0.32 7.65 -2.39 -0.02 0.30 16 47 H 0.05 2.64 6.04 -2.39 -0.01 2.63 16 48 H 0.25 13.78 8.31 -92.71 -0.77 13.00 16 49 H 0.02 0.66 6.59 -2.38 -0.02 0.64 16 50 H 0.04 1.79 7.93 -2.39 -0.02 1.77 16 51 H 0.06 1.83 7.83 -2.39 -0.02 1.81 16 52 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -73.69 402.23 2.01 -71.68 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -0.99 Total: 20.93 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 6.19 Total: 6.88 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -5.17 Total: -124.14 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.04 Total: -21.49 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -73.69 2.01 -71.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086915722.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.985 kcal (2) G-P(sol) polarization free energy of solvation -73.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds