Wall clock time and date at job start Wed Apr 1 2020 04:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33313 * 126.10803 * 2 1 4 4 C 1.30856 * 109.68286 * 180.02562 * 3 2 1 5 5 N 1.34498 * 109.16640 * 359.72857 * 4 3 2 6 6 C 1.46493 * 126.47674 * 180.29037 * 5 4 3 7 7 C 1.36665 * 126.10380 * 180.02562 * 2 1 3 8 8 C 1.46761 * 126.84289 * 359.97438 * 7 2 1 9 9 O 1.21685 * 119.99968 * 270.81989 * 8 7 2 10 10 N 1.34775 * 120.00446 * 90.82880 * 8 7 2 11 11 C 1.47174 * 125.65855 * 4.89867 * 10 8 7 12 12 C 1.53695 * 107.10950 * 178.47614 * 11 10 8 13 13 C 1.54513 * 103.64727 * 338.45558 * 12 11 10 14 14 C 1.47481 * 125.66273 * 184.88114 * 10 8 7 15 15 H 1.09000 * 110.35591 * 85.07200 * 14 10 8 16 16 C 1.52997 * 110.35393 * 322.89083 * 14 10 8 17 17 C 1.52282 * 110.64233 * 96.56991 * 12 11 10 18 18 C 1.53315 * 109.41673 * 63.77966 * 17 12 11 19 19 N 1.46920 * 108.70955 * 53.51453 * 18 17 12 20 20 C 1.36937 * 120.56566 * 125.74198 * 19 18 17 21 21 H 1.07998 * 119.99632 * 328.32231 * 20 19 18 22 22 C 1.38812 * 120.00128 * 148.31870 * 20 19 18 23 23 N 1.31625 * 120.00185 * 349.82655 * 22 20 19 24 24 Si 1.86802 * 120.00096 * 169.82129 * 22 20 19 25 25 H 1.48499 * 109.47115 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47215 * 300.00204 * 24 22 20 27 27 H 1.48498 * 109.46858 * 60.00164 * 24 22 20 28 28 C 1.46932 * 118.87217 * 306.01575 * 19 18 17 29 29 C 1.52276 * 110.63048 * 220.34790 * 12 11 10 30 30 H 1.08996 * 109.47162 * 269.97967 * 1 2 3 31 31 H 1.09002 * 109.46871 * 29.97555 * 1 2 3 32 32 H 1.08997 * 109.47166 * 149.97550 * 1 2 3 33 33 H 1.08004 * 125.41686 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.47178 * 275.12933 * 6 5 4 35 35 H 1.09005 * 109.46904 * 35.12556 * 6 5 4 36 36 H 1.09001 * 109.47328 * 155.12222 * 6 5 4 37 37 H 1.08994 * 109.91210 * 59.10373 * 11 10 8 38 38 H 1.09002 * 110.06493 * 297.92947 * 11 10 8 39 39 H 1.09005 * 111.01243 * 152.87810 * 13 12 11 40 40 H 1.08993 * 111.01742 * 276.75574 * 13 12 11 41 41 H 1.08996 * 109.47012 * 61.45550 * 16 14 10 42 42 H 1.09000 * 109.47048 * 181.45849 * 16 14 10 43 43 H 1.09002 * 109.46976 * 301.45206 * 16 14 10 44 44 H 1.09001 * 109.47241 * 303.80142 * 17 12 11 45 45 H 1.08991 * 109.48115 * 183.76479 * 17 12 11 46 46 H 1.09000 * 109.60041 * 293.74137 * 18 17 12 47 47 H 1.08999 * 109.72039 * 173.35393 * 18 17 12 48 48 H 0.96992 * 120.00188 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.59815 * 173.75162 * 28 19 18 50 50 H 1.09001 * 109.59785 * 294.21871 * 28 19 18 51 51 H 1.09005 * 109.47639 * 56.20216 * 29 12 11 52 52 H 1.09000 * 109.48311 * 176.23374 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2927 1.0770 0.0000 4 6 3.5478 0.7070 -0.0006 5 7 3.6122 -0.6364 0.0051 6 6 4.8304 -1.4499 0.0125 7 6 2.3124 -1.1042 -0.0005 8 6 1.8820 -2.5073 -0.0006 9 8 1.6895 -3.0847 1.0531 10 7 1.7000 -3.1563 -1.1677 11 6 1.9924 -2.6155 -2.5048 12 6 1.6653 -3.7210 -3.5212 13 6 1.7232 -5.0169 -2.6816 14 6 1.1753 -4.5265 -1.3168 15 1 0.0853 -4.5163 -1.3255 16 6 1.6890 -5.4192 -0.1854 17 6 0.2676 -3.5274 -4.0938 18 6 0.2158 -2.2105 -4.8772 19 7 1.3013 -2.2080 -5.8673 20 6 1.0349 -1.9871 -7.1922 21 1 0.0943 -2.3083 -7.6147 22 6 1.9737 -1.3503 -7.9921 23 7 3.0274 -0.7820 -7.4452 24 14 1.7418 -1.3000 -9.8450 25 1 2.8745 -0.5673 -10.4659 26 1 1.6988 -2.6860 -10.3763 27 1 0.4682 -0.6072 -10.1658 28 6 2.6769 -2.4526 -5.4124 29 6 2.7136 -3.7624 -4.6249 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 4.3971 1.3743 -0.0011 34 1 5.1871 -1.5794 -1.0094 35 1 5.5974 -0.9503 0.6044 36 1 4.6134 -2.4253 0.4480 37 1 3.0466 -2.3474 -2.5744 38 1 1.3733 -1.7393 -2.6974 39 1 1.0799 -5.7872 -3.1069 40 1 2.7481 -5.3750 -2.5855 41 1 1.3402 -5.0302 0.7712 42 1 1.3139 -6.4332 -0.3238 43 1 2.7789 -5.4302 -0.1976 44 1 -0.4571 -3.4951 -3.2803 45 1 0.0298 -4.3563 -4.7603 46 1 0.3436 -1.3723 -4.1923 47 1 -0.7439 -2.1231 -5.3867 48 1 3.6832 -0.3367 -8.0041 49 1 3.3392 -2.5275 -6.2749 50 1 3.0006 -1.6337 -4.7700 51 1 3.7013 -3.8949 -4.1833 52 1 2.5012 -4.5938 -5.2970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086927595.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:28 Heat of formation + Delta-G solvation = 51.046806 kcal Electronic energy + Delta-G solvation = -32979.693570 eV Core-core repulsion = 28980.779008 eV Total energy + Delta-G solvation = -3998.914562 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.23641 -40.45518 -38.39692 -35.99512 -34.52535 -33.16407 -32.34766 -30.96352 -30.84584 -29.98288 -28.40321 -27.27935 -26.22445 -25.67700 -24.36390 -23.33475 -22.36522 -21.38499 -20.75913 -20.36099 -19.05454 -18.26484 -17.30692 -16.85345 -16.36508 -15.91983 -15.66993 -15.18992 -14.89672 -14.64682 -14.31210 -13.91442 -13.82142 -13.60246 -13.50922 -13.31996 -13.16617 -13.04723 -12.82069 -12.75799 -12.58682 -12.36430 -12.19173 -12.15516 -11.94046 -11.78505 -11.55132 -11.27668 -11.17858 -10.90931 -10.76656 -10.52042 -10.33167 -10.24110 -10.20519 -9.89987 -9.69228 -9.60154 -9.57095 -9.40967 -8.62747 -8.50137 -8.38030 -6.63168 -5.81491 -3.29767 1.69595 2.13455 2.74213 2.98761 3.16411 3.35734 3.41258 3.41977 4.33509 4.45904 4.46780 4.53397 4.63705 4.79554 4.90058 4.91507 5.05814 5.15326 5.21752 5.24329 5.24454 5.36123 5.38125 5.53471 5.59641 5.70811 5.72616 5.74062 5.81775 5.89731 5.92633 5.96365 5.99741 6.04429 6.10461 6.14361 6.16889 6.26222 6.44453 6.46442 6.55160 6.58860 6.59776 6.68372 6.79191 6.93498 7.02510 7.30883 7.45458 7.63534 7.75866 7.96060 8.06339 8.45185 9.19731 9.80915 10.38893 11.26515 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011815 B = 0.003786 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.286583 B = 7393.590846 C = 8468.805400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.059 3.941 3 N -0.490 5.490 4 C 0.201 3.799 5 N -0.438 5.438 6 C 0.069 3.931 7 C -0.073 4.073 8 C 0.614 3.386 9 O -0.532 6.532 10 N -0.599 5.599 11 C 0.115 3.885 12 C -0.054 4.054 13 C -0.123 4.123 14 C 0.134 3.866 15 H 0.078 0.922 16 C -0.163 4.163 17 C -0.120 4.120 18 C 0.144 3.856 19 N -0.589 5.589 20 C -0.253 4.253 21 H 0.063 0.937 22 C 0.006 3.994 23 N -0.905 5.905 24 Si 0.904 3.096 25 H -0.290 1.290 26 H -0.284 1.284 27 H -0.282 1.282 28 C 0.172 3.828 29 C -0.127 4.127 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.211 0.789 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.018 0.982 47 H 0.055 0.945 48 H 0.254 0.746 49 H 0.089 0.911 50 H 0.015 0.985 51 H 0.048 0.952 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.967 -5.396 14.653 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 N -0.209 5.209 4 C -0.081 4.081 5 N -0.122 5.122 6 C -0.073 4.073 7 C -0.189 4.189 8 C 0.400 3.600 9 O -0.408 6.408 10 N -0.332 5.332 11 C -0.007 4.007 12 C -0.054 4.054 13 C -0.161 4.161 14 C 0.032 3.968 15 H 0.096 0.904 16 C -0.221 4.221 17 C -0.159 4.159 18 C 0.017 3.983 19 N -0.312 5.312 20 C -0.383 4.383 21 H 0.081 0.919 22 C -0.193 4.193 23 N -0.550 5.550 24 Si 0.733 3.267 25 H -0.216 1.216 26 H -0.210 1.210 27 H -0.208 1.208 28 C 0.046 3.954 29 C -0.166 4.166 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.227 0.773 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.036 0.964 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.107 0.893 50 H 0.033 0.967 51 H 0.067 0.933 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.890 -4.862 15.183 16.054 hybrid contribution 0.550 -0.614 -1.105 1.379 sum 2.440 -5.476 14.078 15.302 Atomic orbital electron populations 1.20116 0.87216 1.03152 1.02490 1.20787 0.96348 0.86757 1.03461 1.69999 1.00367 1.30040 1.20454 1.24958 0.97223 0.81541 1.04335 1.45232 1.05755 1.07747 1.53425 1.22148 0.84715 0.96233 1.04235 1.20600 0.84889 0.94809 1.18573 1.16454 0.77684 0.83203 0.82656 1.90761 1.52436 1.66728 1.30895 1.48673 1.62923 1.15511 1.06098 1.22210 1.00845 0.97774 0.79914 1.20947 0.97851 0.92484 0.94158 1.22987 1.01663 0.97889 0.93566 1.22006 0.98154 0.80817 0.95808 0.90445 1.22198 1.01189 0.98733 0.99971 1.21935 0.93858 1.01157 0.98948 1.20965 0.92867 0.92877 0.91542 1.43941 1.01660 1.82424 1.03165 1.19124 1.03155 1.31433 0.84586 0.91935 1.25154 0.98475 0.97173 0.98456 1.69952 1.12912 1.38045 1.34042 0.86359 0.77227 0.77655 0.85418 1.21624 1.21009 1.20835 1.20715 0.87569 0.89952 0.97151 1.22062 0.95406 1.02664 0.96485 0.90970 0.90343 0.91408 0.77289 0.89723 0.88923 0.89709 0.91884 0.90326 0.89878 0.90817 0.89638 0.92140 0.92964 0.93043 0.91775 0.96421 0.92683 0.93575 0.89310 0.96675 0.93325 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.24 36.01 0.37 -0.59 16 2 C 0.06 0.92 7.15 -82.52 -0.59 0.33 16 3 N -0.49 -7.59 11.20 -10.64 -0.12 -7.71 16 4 C 0.20 2.49 12.52 -90.57 -1.13 1.36 16 5 N -0.44 -5.47 3.17 -121.98 -0.39 -5.86 16 6 C 0.07 0.59 11.07 59.84 0.66 1.26 16 7 C -0.07 -1.09 5.85 -82.14 -0.48 -1.57 16 8 C 0.61 9.37 6.59 -12.82 -0.08 9.29 16 9 O -0.53 -9.12 14.65 5.20 0.08 -9.05 16 10 N -0.60 -8.44 3.25 -164.70 -0.53 -8.97 16 11 C 0.11 1.74 4.67 -3.31 -0.02 1.72 16 12 C -0.05 -0.80 0.53 -154.09 -0.08 -0.88 16 13 C -0.12 -1.50 5.41 -24.87 -0.13 -1.63 16 14 C 0.13 1.68 3.46 -66.32 -0.23 1.45 16 15 H 0.08 0.96 7.76 -51.93 -0.40 0.55 16 16 C -0.16 -1.92 8.64 37.16 0.32 -1.60 16 17 C -0.12 -1.90 4.78 -26.93 -0.13 -2.03 16 18 C 0.14 2.85 6.22 -3.65 -0.02 2.83 16 19 N -0.59 -13.95 2.98 -172.44 -0.51 -14.47 16 20 C -0.25 -6.70 9.57 -15.06 -0.14 -6.84 16 21 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 22 C 0.01 0.16 5.05 -17.43 -0.09 0.08 16 23 N -0.91 -25.47 11.05 55.49 0.61 -24.85 16 24 Si 0.90 21.19 29.57 -169.99 -5.03 16.16 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.17 3.82 4.97 -3.87 -0.02 3.80 16 29 C -0.13 -2.17 4.69 -27.17 -0.13 -2.30 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.88 7.94 -51.93 -0.41 0.47 16 33 H 0.21 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.78 7.79 -51.93 -0.40 0.38 16 37 H 0.06 0.99 7.59 -51.93 -0.39 0.60 16 38 H 0.08 1.36 6.07 -51.93 -0.32 1.04 16 39 H 0.08 0.92 8.01 -51.93 -0.42 0.51 16 40 H 0.07 0.87 7.92 -51.93 -0.41 0.46 16 41 H 0.08 1.17 5.88 -51.93 -0.31 0.87 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.73 7.49 -51.93 -0.39 0.34 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.02 0.37 6.53 -51.93 -0.34 0.03 16 47 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.09 2.26 6.09 -51.93 -0.32 1.94 16 50 H 0.02 0.36 7.47 -51.93 -0.39 -0.03 16 51 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 52 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 400.53 15.07 6.04 6.04 Total: -1.00 -32.13 400.53 -10.46 -42.59 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.68 Total: 1.45 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.93 Total: 4.68 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -0.94 Total: -61.86 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.13 -10.46 -42.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086927595.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.635 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds