Wall clock time and date at job start Wed Apr 1 2020 04:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33313 * 126.10803 * 2 1 4 4 C 1.30856 * 109.68286 * 180.02562 * 3 2 1 5 5 N 1.34498 * 109.16640 * 359.72857 * 4 3 2 6 6 C 1.46493 * 126.47674 * 180.29037 * 5 4 3 7 7 C 1.36665 * 126.10380 * 180.02562 * 2 1 3 8 8 C 1.46761 * 126.84289 * 359.97438 * 7 2 1 9 9 O 1.21685 * 119.99968 * 270.81989 * 8 7 2 10 10 N 1.34775 * 120.00446 * 90.82880 * 8 7 2 11 11 C 1.47174 * 125.65855 * 4.89867 * 10 8 7 12 12 C 1.53695 * 107.10950 * 178.47614 * 11 10 8 13 13 C 1.54513 * 103.64727 * 338.45558 * 12 11 10 14 14 C 1.47481 * 125.66273 * 184.88114 * 10 8 7 15 15 H 1.09000 * 110.35591 * 85.07200 * 14 10 8 16 16 C 1.52997 * 110.35393 * 322.89083 * 14 10 8 17 17 C 1.52282 * 110.64233 * 96.56991 * 12 11 10 18 18 C 1.53315 * 109.41673 * 63.77966 * 17 12 11 19 19 N 1.46920 * 108.70955 * 53.51453 * 18 17 12 20 20 C 1.36937 * 120.56566 * 125.74198 * 19 18 17 21 21 H 1.07998 * 119.99632 * 328.32231 * 20 19 18 22 22 C 1.38812 * 120.00128 * 148.31870 * 20 19 18 23 23 N 1.31625 * 120.00185 * 349.82655 * 22 20 19 24 24 Si 1.86802 * 120.00096 * 169.82129 * 22 20 19 25 25 H 1.48499 * 109.47115 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47215 * 300.00204 * 24 22 20 27 27 H 1.48498 * 109.46858 * 60.00164 * 24 22 20 28 28 C 1.46932 * 118.87217 * 306.01575 * 19 18 17 29 29 C 1.52276 * 110.63048 * 220.34790 * 12 11 10 30 30 H 1.08996 * 109.47162 * 269.97967 * 1 2 3 31 31 H 1.09002 * 109.46871 * 29.97555 * 1 2 3 32 32 H 1.08997 * 109.47166 * 149.97550 * 1 2 3 33 33 H 1.08004 * 125.41686 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.47178 * 275.12933 * 6 5 4 35 35 H 1.09005 * 109.46904 * 35.12556 * 6 5 4 36 36 H 1.09001 * 109.47328 * 155.12222 * 6 5 4 37 37 H 1.08994 * 109.91210 * 59.10373 * 11 10 8 38 38 H 1.09002 * 110.06493 * 297.92947 * 11 10 8 39 39 H 1.09005 * 111.01243 * 152.87810 * 13 12 11 40 40 H 1.08993 * 111.01742 * 276.75574 * 13 12 11 41 41 H 1.08996 * 109.47012 * 61.45550 * 16 14 10 42 42 H 1.09000 * 109.47048 * 181.45849 * 16 14 10 43 43 H 1.09002 * 109.46976 * 301.45206 * 16 14 10 44 44 H 1.09001 * 109.47241 * 303.80142 * 17 12 11 45 45 H 1.08991 * 109.48115 * 183.76479 * 17 12 11 46 46 H 1.09000 * 109.60041 * 293.74137 * 18 17 12 47 47 H 1.08999 * 109.72039 * 173.35393 * 18 17 12 48 48 H 0.96992 * 120.00188 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.59815 * 173.75162 * 28 19 18 50 50 H 1.09001 * 109.59785 * 294.21871 * 28 19 18 51 51 H 1.09005 * 109.47639 * 56.20216 * 29 12 11 52 52 H 1.09000 * 109.48311 * 176.23374 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2927 1.0770 0.0000 4 6 3.5478 0.7070 -0.0006 5 7 3.6122 -0.6364 0.0051 6 6 4.8304 -1.4499 0.0125 7 6 2.3124 -1.1042 -0.0005 8 6 1.8820 -2.5073 -0.0006 9 8 1.6895 -3.0847 1.0531 10 7 1.7000 -3.1563 -1.1677 11 6 1.9924 -2.6155 -2.5048 12 6 1.6653 -3.7210 -3.5212 13 6 1.7232 -5.0169 -2.6816 14 6 1.1753 -4.5265 -1.3168 15 1 0.0853 -4.5163 -1.3255 16 6 1.6890 -5.4192 -0.1854 17 6 0.2676 -3.5274 -4.0938 18 6 0.2158 -2.2105 -4.8772 19 7 1.3013 -2.2080 -5.8673 20 6 1.0349 -1.9871 -7.1922 21 1 0.0943 -2.3083 -7.6147 22 6 1.9737 -1.3503 -7.9921 23 7 3.0274 -0.7820 -7.4452 24 14 1.7418 -1.3000 -9.8450 25 1 2.8745 -0.5673 -10.4659 26 1 1.6988 -2.6860 -10.3763 27 1 0.4682 -0.6072 -10.1658 28 6 2.6769 -2.4526 -5.4124 29 6 2.7136 -3.7624 -4.6249 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 4.3971 1.3743 -0.0011 34 1 5.1871 -1.5794 -1.0094 35 1 5.5974 -0.9503 0.6044 36 1 4.6134 -2.4253 0.4480 37 1 3.0466 -2.3474 -2.5744 38 1 1.3733 -1.7393 -2.6974 39 1 1.0799 -5.7872 -3.1069 40 1 2.7481 -5.3750 -2.5855 41 1 1.3402 -5.0302 0.7712 42 1 1.3139 -6.4332 -0.3238 43 1 2.7789 -5.4302 -0.1976 44 1 -0.4571 -3.4951 -3.2803 45 1 0.0298 -4.3563 -4.7603 46 1 0.3436 -1.3723 -4.1923 47 1 -0.7439 -2.1231 -5.3867 48 1 3.6832 -0.3367 -8.0041 49 1 3.3392 -2.5275 -6.2749 50 1 3.0006 -1.6337 -4.7700 51 1 3.7013 -3.8949 -4.1833 52 1 2.5012 -4.5938 -5.2970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086927595.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:27 Heat of formation + Delta-G solvation = 33.742945 kcal Electronic energy + Delta-G solvation = -32980.443922 eV Core-core repulsion = 28980.779008 eV Total energy + Delta-G solvation = -3999.664914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.26040 -41.65228 -39.70944 -37.49237 -35.47200 -34.79832 -33.46447 -32.62283 -31.90268 -31.57978 -29.35939 -28.76013 -27.18797 -26.79028 -26.02737 -24.54104 -23.84544 -22.79035 -21.93986 -21.45701 -20.25451 -19.64945 -18.49241 -18.35408 -17.62009 -16.98241 -16.85173 -16.64530 -16.27508 -15.80368 -15.75527 -15.42437 -14.98781 -14.87803 -14.74847 -14.54885 -14.50325 -14.27236 -14.01379 -13.86146 -13.59786 -13.33530 -13.28718 -13.27835 -13.17664 -13.10004 -12.96826 -12.79994 -12.57834 -12.48002 -12.38462 -12.05500 -11.96117 -11.85912 -11.52876 -11.29349 -11.07638 -10.96487 -10.78470 -10.61995 -10.50079 -9.79585 -9.44770 -8.56679 -7.84109 -5.34957 0.65804 1.05799 1.48635 1.49311 1.56049 1.67276 1.95425 2.11698 2.52343 3.24111 3.30378 3.47331 3.56604 3.69915 3.75287 3.76843 3.81832 4.07150 4.09085 4.20174 4.23636 4.27799 4.29490 4.41652 4.49190 4.55483 4.57812 4.62973 4.68897 4.70963 4.75415 4.78513 4.79948 4.90909 4.92066 4.95839 5.05842 5.11261 5.13570 5.19234 5.23492 5.28938 5.35206 5.41214 5.47801 5.54688 5.56864 5.67473 5.81437 6.11377 6.28963 6.44720 6.89368 6.93657 7.19969 7.89756 8.41727 9.20926 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011815 B = 0.003786 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.286583 B = 7393.590846 C = 8468.805400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.037 3.963 3 N -0.528 5.528 4 C 0.209 3.791 5 N -0.439 5.439 6 C 0.064 3.936 7 C -0.095 4.095 8 C 0.619 3.381 9 O -0.553 6.553 10 N -0.594 5.594 11 C 0.128 3.872 12 C -0.051 4.051 13 C -0.108 4.108 14 C 0.130 3.870 15 H 0.085 0.915 16 C -0.155 4.155 17 C -0.107 4.107 18 C 0.141 3.859 19 N -0.606 5.606 20 C -0.262 4.262 21 H 0.063 0.937 22 C -0.045 4.045 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.295 1.295 26 H -0.276 1.276 27 H -0.278 1.278 28 C 0.181 3.819 29 C -0.112 4.112 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.251 0.749 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.007 0.993 47 H 0.050 0.950 48 H 0.249 0.751 49 H 0.052 0.948 50 H -0.009 1.009 51 H 0.068 0.932 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 -7.250 15.193 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.096 4.096 3 N -0.247 5.247 4 C -0.073 4.073 5 N -0.121 5.121 6 C -0.076 4.076 7 C -0.212 4.212 8 C 0.405 3.595 9 O -0.432 6.432 10 N -0.326 5.326 11 C 0.006 3.994 12 C -0.051 4.051 13 C -0.146 4.146 14 C 0.028 3.972 15 H 0.103 0.897 16 C -0.212 4.212 17 C -0.145 4.145 18 C 0.015 3.985 19 N -0.330 5.330 20 C -0.392 4.392 21 H 0.081 0.919 22 C -0.241 4.241 23 N -0.581 5.581 24 Si 0.793 3.207 25 H -0.222 1.222 26 H -0.202 1.202 27 H -0.204 1.204 28 C 0.056 3.944 29 C -0.151 4.151 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.267 0.733 34 H 0.109 0.891 35 H 0.146 0.854 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.025 0.975 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.071 0.929 50 H 0.009 0.991 51 H 0.086 0.914 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.108 -6.755 15.733 17.251 hybrid contribution 0.487 0.036 -1.246 1.338 sum 2.595 -6.719 14.487 16.179 Atomic orbital electron populations 1.20125 0.86612 1.03008 1.03011 1.21151 0.97267 0.87219 1.03941 1.69977 1.01832 1.30669 1.22235 1.25783 0.97506 0.82041 1.02000 1.45487 1.05956 1.08135 1.52564 1.22419 0.83979 0.95963 1.05286 1.20674 0.86158 0.94620 1.19717 1.16466 0.77249 0.83231 0.82534 1.90752 1.53526 1.67315 1.31560 1.48663 1.62532 1.16162 1.05277 1.21934 0.99793 0.97068 0.80653 1.20847 0.96413 0.94316 0.93568 1.22931 1.02977 0.96460 0.92190 1.22208 0.98618 0.79927 0.96422 0.89749 1.22100 1.01006 0.99708 0.98392 1.21778 0.95118 0.98551 0.99094 1.21076 0.91484 0.94956 0.90938 1.44192 1.02927 1.82745 1.03129 1.19450 1.03017 1.30642 0.86115 0.91885 1.25850 0.98500 0.97424 1.02321 1.70122 1.13679 1.39245 1.35080 0.85394 0.76824 0.77738 0.80777 1.22161 1.20184 1.20426 1.20480 0.86298 0.91866 0.95800 1.21838 0.97412 0.99280 0.96581 0.90081 0.90328 0.91614 0.73280 0.89134 0.85405 0.90394 0.92653 0.92811 0.87669 0.89701 0.91697 0.89602 0.93161 0.90777 0.91232 0.97528 0.93095 0.94209 0.92948 0.99107 0.91384 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.90 10.24 71.24 0.73 -1.17 16 2 C 0.04 1.16 7.15 41.97 0.30 1.46 16 3 N -0.53 -16.38 11.20 -187.58 -2.10 -18.48 16 4 C 0.21 4.94 12.52 180.33 2.26 7.20 16 5 N -0.44 -10.55 3.17 -539.82 -1.71 -12.26 16 6 C 0.06 0.99 11.07 127.77 1.41 2.41 16 7 C -0.09 -2.83 5.85 40.01 0.23 -2.60 16 8 C 0.62 18.55 6.59 86.47 0.57 19.12 16 9 O -0.55 -18.72 14.65 -4.30 -0.06 -18.78 16 10 N -0.59 -15.98 3.25 -793.22 -2.58 -18.55 16 11 C 0.13 3.79 4.67 86.48 0.40 4.19 16 12 C -0.05 -1.41 0.53 -51.91 -0.03 -1.43 16 13 C -0.11 -2.22 5.41 31.80 0.17 -2.05 16 14 C 0.13 2.88 3.46 45.50 0.16 3.04 16 15 H 0.08 1.81 7.76 -2.39 -0.02 1.79 16 16 C -0.15 -3.20 8.64 71.98 0.62 -2.58 16 17 C -0.11 -3.17 4.78 30.46 0.15 -3.03 16 18 C 0.14 5.59 6.22 86.40 0.54 6.12 16 19 N -0.61 -29.10 2.98 -699.47 -2.08 -31.19 16 20 C -0.26 -14.01 9.57 84.03 0.80 -13.21 16 21 H 0.06 3.30 7.85 -2.91 -0.02 3.27 16 22 C -0.05 -2.48 5.05 84.86 0.43 -2.06 16 23 N -0.94 -54.16 11.05 21.65 0.24 -53.92 16 24 Si 0.96 44.02 29.57 68.60 2.03 46.05 16 25 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 28 C 0.18 8.20 4.97 86.25 0.43 8.62 16 29 C -0.11 -3.69 4.69 30.31 0.14 -3.55 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 1.75 7.94 -2.39 -0.02 1.73 16 33 H 0.25 3.36 8.06 -2.91 -0.02 3.33 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.08 1.33 7.79 -2.39 -0.02 1.32 16 37 H 0.06 1.72 7.59 -2.39 -0.02 1.71 16 38 H 0.05 1.88 6.07 -2.39 -0.01 1.87 16 39 H 0.10 1.80 8.01 -2.38 -0.02 1.79 16 40 H 0.08 1.63 7.92 -2.39 -0.02 1.62 16 41 H 0.06 1.66 5.88 -2.39 -0.01 1.65 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 1.90 7.49 -2.39 -0.02 1.89 16 45 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.01 0.29 6.53 -2.39 -0.02 0.27 16 47 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 48 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 49 H 0.05 2.75 6.09 -2.39 -0.01 2.73 16 50 H -0.01 -0.45 7.47 -2.39 -0.02 -0.47 16 51 H 0.07 1.98 8.10 -2.38 -0.02 1.96 16 52 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -72.10 400.53 3.95 -68.14 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.90 Total: 18.48 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 9.32 Total: 20.51 kcal Atomic # 7 Polarization: -126.17 SS G_CDS: -8.23 Total: -134.40 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.06 Total: -18.78 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.10 3.95 -68.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086927595.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.886 kcal (2) G-P(sol) polarization free energy of solvation -72.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds