Wall clock time and date at job start Wed Apr 1 2020 04:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34662 * 126.59313 * 2 1 4 4 N 1.34131 * 108.02221 * 180.27820 * 3 2 1 5 5 C 1.30491 * 109.25596 * 359.73366 * 4 3 2 6 6 N 1.35049 * 108.70163 * 359.97438 * 5 4 3 7 7 C 1.46496 * 126.39722 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47027 * 265.01880 * 7 6 5 9 9 O 1.21289 * 119.99978 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00361 * 180.02562 * 8 7 6 11 11 C 1.47185 * 125.65923 * 359.94844 * 10 8 7 12 12 C 1.53685 * 107.11212 * 181.54961 * 11 10 8 13 13 C 1.54535 * 103.64453 * 21.55166 * 12 11 10 14 14 C 1.47479 * 125.66509 * 180.02562 * 10 8 7 15 15 H 1.09000 * 110.35914 * 274.78484 * 14 10 8 16 16 C 1.52995 * 110.44566 * 37.03219 * 14 10 8 17 17 C 1.52277 * 110.66442 * 263.46884 * 12 11 10 18 18 C 1.53314 * 109.41594 * 176.87544 * 17 12 11 19 19 N 1.46923 * 108.71002 * 53.51685 * 18 17 12 20 20 C 1.36940 * 120.56420 * 125.76520 * 19 18 17 21 21 H 1.07997 * 120.00259 * 331.87851 * 20 19 18 22 22 C 1.38809 * 119.99866 * 151.87374 * 20 19 18 23 23 N 1.31627 * 120.00020 * 335.53592 * 22 20 19 24 24 Si 1.86798 * 120.00105 * 155.53616 * 22 20 19 25 25 H 1.48501 * 109.47393 * 180.02562 * 24 22 20 26 26 H 1.48506 * 109.47155 * 300.00031 * 24 22 20 27 27 H 1.48501 * 109.47249 * 59.99742 * 24 22 20 28 28 C 1.46931 * 118.86973 * 306.04490 * 19 18 17 29 29 C 1.52267 * 110.67148 * 139.64258 * 12 11 10 30 30 H 1.08994 * 109.47630 * 270.16296 * 1 2 3 31 31 H 1.08997 * 109.47439 * 30.16843 * 1 2 3 32 32 H 1.09002 * 109.47240 * 150.16286 * 1 2 3 33 33 H 1.08003 * 125.99282 * 0.04840 * 3 2 1 34 34 H 1.07998 * 125.65299 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.46800 * 145.02747 * 7 6 5 36 36 H 1.08992 * 109.47647 * 25.02152 * 7 6 5 37 37 H 1.09004 * 109.90467 * 62.18114 * 11 10 8 38 38 H 1.08996 * 109.90816 * 300.92125 * 11 10 8 39 39 H 1.09002 * 111.00935 * 83.22875 * 13 12 11 40 40 H 1.08995 * 111.01443 * 207.10527 * 13 12 11 41 41 H 1.09002 * 109.47605 * 175.53354 * 16 14 10 42 42 H 1.09002 * 109.46704 * 295.52883 * 16 14 10 43 43 H 1.08995 * 109.47562 * 55.52600 * 16 14 10 44 44 H 1.09005 * 109.47725 * 56.89234 * 17 12 11 45 45 H 1.08991 * 109.49288 * 296.86494 * 17 12 11 46 46 H 1.09004 * 109.59300 * 293.75322 * 18 17 12 47 47 H 1.09004 * 109.59981 * 173.29292 * 18 17 12 48 48 H 0.96998 * 119.99563 * 354.25156 * 23 22 20 49 49 H 1.09001 * 109.59612 * 173.72304 * 28 19 18 50 50 H 1.08997 * 109.59214 * 294.19012 * 28 19 18 51 51 H 1.08998 * 109.48476 * 303.09944 * 29 12 11 52 52 H 1.08997 * 109.47989 * 63.13031 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6540 -0.0062 5 6 3.5968 -0.6508 -0.0043 6 7 2.3229 -1.0991 0.0038 7 6 1.8943 -2.5000 0.0089 8 6 1.6214 -2.9470 -1.4041 9 8 1.7707 -2.1717 -2.3249 10 7 1.2115 -4.2081 -1.6447 11 6 0.9915 -5.2478 -0.6265 12 6 0.5695 -6.5257 -1.3688 13 6 1.0986 -6.3052 -2.8039 14 6 0.9103 -4.7758 -2.9721 15 1 -0.1173 -4.5497 -3.2570 16 6 1.8838 -4.2318 -4.0195 17 6 -0.9470 -6.6625 -1.3836 18 6 -1.3390 -7.9020 -2.1962 19 7 -0.6132 -9.0634 -1.6641 20 6 -1.2895 -10.1885 -1.2745 21 1 -2.3073 -10.1118 -0.9215 22 6 -0.6669 -11.4278 -1.3333 23 7 0.3312 -11.6239 -2.1687 24 14 -1.2456 -12.8172 -0.2270 25 1 -0.4230 -14.0273 -0.4806 26 1 -1.1022 -12.4108 1.1942 27 1 -2.6711 -13.1179 -0.5144 28 6 0.8502 -8.9946 -1.5513 29 6 1.2286 -7.7502 -0.7485 30 1 -0.3634 0.0029 1.0276 31 1 -0.3634 0.8884 -0.5164 32 1 -0.3634 -0.8914 -0.5113 33 1 1.9865 2.1117 0.0007 34 1 4.4818 -1.2697 -0.0077 35 1 0.9861 -2.5999 0.6034 36 1 2.6809 -3.1190 0.4403 37 1 0.2009 -4.9371 0.0565 38 1 1.9138 -5.4270 -0.0738 39 1 2.1508 -6.5798 -2.8789 40 1 0.5000 -6.8552 -3.5300 41 1 1.6986 -4.7202 -4.9762 42 1 1.7391 -3.1568 -4.1264 43 1 2.9074 -4.4308 -3.7022 44 1 -1.3876 -5.7753 -1.8385 45 1 -1.3128 -6.7669 -0.3622 46 1 -1.0726 -7.7524 -3.2426 47 1 -2.4125 -8.0710 -2.1105 48 1 0.5775 -10.9309 -2.8011 49 1 1.2197 -9.8837 -1.0404 50 1 1.2909 -8.9320 -2.5462 51 1 2.3112 -7.6247 -0.7587 52 1 0.8857 -7.8659 0.2797 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086932432.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:35 Heat of formation + Delta-G solvation = 51.136988 kcal Electronic energy + Delta-G solvation = -31810.216455 eV Core-core repulsion = 27811.305804 eV Total energy + Delta-G solvation = -3998.910652 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.35321 -40.79578 -38.83061 -36.32794 -34.34209 -33.45916 -32.29988 -31.94103 -31.07431 -30.09600 -28.08113 -27.04881 -26.63089 -26.16702 -24.05974 -22.90715 -22.24301 -21.61684 -21.08894 -20.34403 -19.21654 -18.36801 -17.58389 -17.22809 -17.14705 -16.56110 -15.59642 -15.14837 -14.85247 -14.64713 -14.33579 -14.22457 -14.05874 -13.84631 -13.66967 -13.59365 -13.35076 -13.25324 -13.09095 -13.00391 -12.78935 -12.68905 -12.60238 -12.46208 -12.14103 -11.98624 -11.79048 -11.26574 -11.07082 -10.96120 -10.75394 -10.58782 -10.41793 -10.22113 -10.12406 -10.11854 -10.01069 -9.81859 -9.53492 -9.32808 -8.87015 -8.45660 -8.45080 -6.96503 -6.14407 -3.32167 1.72439 2.22610 2.32752 2.84187 3.04281 3.43904 3.46356 3.64743 4.02548 4.23304 4.41607 4.45920 4.52041 4.54295 4.56987 4.68250 4.79845 4.89992 4.98983 5.09283 5.21188 5.22253 5.24250 5.25038 5.38353 5.45257 5.45672 5.54737 5.56363 5.59319 5.64202 5.78956 5.82260 5.92360 6.01042 6.05806 6.12193 6.14966 6.21666 6.32013 6.34565 6.41097 6.44835 6.57011 6.60598 6.69944 6.93055 6.94484 7.08907 7.25416 7.81988 7.90457 7.92702 8.49961 9.03339 9.76205 10.20139 11.13883 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023456 B = 0.002349 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.417030 B =11915.243151 C =12182.675349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.013 4.013 3 C -0.031 4.031 4 N -0.492 5.492 5 C 0.189 3.811 6 N -0.442 5.442 7 C 0.088 3.912 8 C 0.511 3.489 9 O -0.521 6.521 10 N -0.607 5.607 11 C 0.102 3.898 12 C -0.055 4.055 13 C -0.120 4.120 14 C 0.137 3.863 15 H 0.076 0.924 16 C -0.160 4.160 17 C -0.119 4.119 18 C 0.148 3.852 19 N -0.597 5.597 20 C -0.350 4.350 21 H 0.055 0.945 22 C -0.023 4.023 23 N -0.915 5.915 24 Si 1.063 2.937 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.293 1.293 28 C 0.152 3.848 29 C -0.121 4.121 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.168 0.832 34 H 0.202 0.798 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.018 0.982 47 H 0.055 0.945 48 H 0.269 0.731 49 H 0.080 0.920 50 H 0.018 0.982 51 H 0.053 0.947 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 17.925 4.697 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C -0.178 4.178 4 N -0.209 5.209 5 C -0.093 4.093 6 N -0.125 5.125 7 C -0.039 4.039 8 C 0.297 3.703 9 O -0.397 6.397 10 N -0.342 5.342 11 C -0.021 4.021 12 C -0.055 4.055 13 C -0.157 4.157 14 C 0.035 3.965 15 H 0.094 0.906 16 C -0.218 4.218 17 C -0.159 4.159 18 C 0.022 3.978 19 N -0.321 5.321 20 C -0.479 4.479 21 H 0.073 0.927 22 C -0.225 4.225 23 N -0.555 5.555 24 Si 0.893 3.107 25 H -0.211 1.211 26 H -0.221 1.221 27 H -0.220 1.220 28 C 0.026 3.974 29 C -0.160 4.160 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.185 0.815 34 H 0.219 0.781 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.036 0.964 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.098 0.902 50 H 0.036 0.964 51 H 0.072 0.928 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.916 17.206 4.682 18.069 hybrid contribution -1.059 0.882 -0.403 1.436 sum 1.857 18.089 4.279 18.680 Atomic orbital electron populations 1.20204 0.87408 1.03519 1.02363 1.21207 0.94502 0.86685 1.10304 1.21991 0.88404 0.98312 1.09076 1.70255 1.22443 1.08723 1.19474 1.24857 0.86909 0.91841 1.05697 1.44891 1.07483 1.05265 1.54906 1.21660 1.04505 0.81347 0.96353 1.20250 0.78033 0.81136 0.90909 1.90744 1.51676 1.52296 1.44989 1.48669 1.65942 1.10105 1.09493 1.22354 1.00764 0.87989 0.91001 1.20940 0.96895 0.93125 0.94585 1.22976 1.02207 0.93084 0.97471 1.22011 0.98967 0.93289 0.82267 0.90645 1.22117 0.98653 1.03216 0.97822 1.21925 0.93114 0.99177 1.01639 1.20936 0.96161 0.86829 0.93923 1.44081 1.01484 1.13114 1.73421 1.19955 1.00075 0.86048 1.41853 0.92723 1.25837 0.98721 0.97999 0.99972 1.70798 1.31275 1.35759 1.17676 0.83550 0.75344 0.76117 0.75716 1.21084 1.22071 1.21980 1.20857 0.84869 0.95467 0.96189 1.21916 0.98031 0.95566 1.00532 0.90973 0.89885 0.91986 0.81514 0.78125 0.86388 0.85865 0.91211 0.91168 0.90672 0.88979 0.91901 0.90185 0.92813 0.92987 0.91920 0.96388 0.92628 0.92033 0.90189 0.96391 0.92803 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.08 36.00 0.36 -0.25 16 2 C -0.01 -0.14 6.95 -81.60 -0.57 -0.71 16 3 C -0.03 -0.37 11.79 -17.81 -0.21 -0.58 16 4 N -0.49 -6.60 11.25 -14.67 -0.17 -6.77 16 5 C 0.19 2.12 12.56 -90.38 -1.13 0.99 16 6 N -0.44 -4.64 2.24 -115.28 -0.26 -4.90 16 7 C 0.09 0.72 5.47 -5.20 -0.03 0.69 16 8 C 0.51 5.81 7.70 -10.99 -0.08 5.72 16 9 O -0.52 -7.85 14.16 5.55 0.08 -7.78 16 10 N -0.61 -6.66 3.25 -163.21 -0.53 -7.19 16 11 C 0.10 1.03 5.67 -3.31 -0.02 1.01 16 12 C -0.05 -0.72 0.55 -154.09 -0.09 -0.80 16 13 C -0.12 -1.54 4.35 -24.86 -0.11 -1.65 16 14 C 0.14 1.64 3.44 -66.34 -0.23 1.41 16 15 H 0.08 0.93 7.74 -51.93 -0.40 0.53 16 16 C -0.16 -1.95 8.60 37.16 0.32 -1.63 16 17 C -0.12 -1.73 4.74 -26.94 -0.13 -1.86 16 18 C 0.15 2.75 6.19 -3.65 -0.02 2.73 16 19 N -0.60 -13.54 2.84 -172.45 -0.49 -14.03 16 20 C -0.35 -9.17 9.48 -15.06 -0.14 -9.31 16 21 H 0.05 1.45 7.94 -52.49 -0.42 1.03 16 22 C -0.02 -0.62 4.69 -17.43 -0.08 -0.70 16 23 N -0.92 -26.12 12.41 55.49 0.69 -25.43 16 24 Si 1.06 24.11 29.98 -169.99 -5.10 19.01 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 28 C 0.15 3.16 4.37 -3.89 -0.02 3.14 16 29 C -0.12 -1.88 4.70 -27.18 -0.13 -2.01 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.53 7.96 -51.93 -0.41 0.12 16 33 H 0.17 1.59 8.06 -52.48 -0.42 1.16 16 34 H 0.20 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.12 0.74 8.03 -51.93 -0.42 0.32 16 36 H 0.12 0.69 8.13 -51.93 -0.42 0.27 16 37 H 0.07 0.62 7.83 -51.93 -0.41 0.22 16 38 H 0.07 0.62 7.78 -51.93 -0.40 0.22 16 39 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 40 H 0.09 1.32 6.08 -51.93 -0.32 1.00 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.12 6.10 -51.93 -0.32 0.80 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.67 7.47 -51.93 -0.39 0.28 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.02 0.34 6.47 -51.93 -0.34 0.00 16 47 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 48 H 0.27 7.69 6.71 -40.82 -0.27 7.41 16 49 H 0.08 1.93 6.30 -51.93 -0.33 1.60 16 50 H 0.02 0.38 7.30 -51.93 -0.38 0.00 16 51 H 0.05 0.75 8.11 -51.93 -0.42 0.32 16 52 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 399.53 15.07 6.02 6.02 Total: -1.00 -32.89 399.53 -10.69 -43.58 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.64 Total: 1.29 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -2.30 Total: -3.81 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.75 Total: -58.32 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.08 Total: -7.78 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.10 Total: 19.01 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.89 -10.69 -43.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086932432.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.721 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds