Wall clock time and date at job start Wed Apr 1 2020 04:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34662 * 126.59313 * 2 1 4 4 N 1.34131 * 108.02221 * 180.27820 * 3 2 1 5 5 C 1.30491 * 109.25596 * 359.73366 * 4 3 2 6 6 N 1.35049 * 108.70163 * 359.97438 * 5 4 3 7 7 C 1.46496 * 126.39722 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47027 * 265.01880 * 7 6 5 9 9 O 1.21289 * 119.99978 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00361 * 180.02562 * 8 7 6 11 11 C 1.47185 * 125.65923 * 359.94844 * 10 8 7 12 12 C 1.53685 * 107.11212 * 181.54961 * 11 10 8 13 13 C 1.54535 * 103.64453 * 21.55166 * 12 11 10 14 14 C 1.47479 * 125.66509 * 180.02562 * 10 8 7 15 15 H 1.09000 * 110.35914 * 274.78484 * 14 10 8 16 16 C 1.52995 * 110.44566 * 37.03219 * 14 10 8 17 17 C 1.52277 * 110.66442 * 263.46884 * 12 11 10 18 18 C 1.53314 * 109.41594 * 176.87544 * 17 12 11 19 19 N 1.46923 * 108.71002 * 53.51685 * 18 17 12 20 20 C 1.36940 * 120.56420 * 125.76520 * 19 18 17 21 21 H 1.07997 * 120.00259 * 331.87851 * 20 19 18 22 22 C 1.38809 * 119.99866 * 151.87374 * 20 19 18 23 23 N 1.31627 * 120.00020 * 335.53592 * 22 20 19 24 24 Si 1.86798 * 120.00105 * 155.53616 * 22 20 19 25 25 H 1.48501 * 109.47393 * 180.02562 * 24 22 20 26 26 H 1.48506 * 109.47155 * 300.00031 * 24 22 20 27 27 H 1.48501 * 109.47249 * 59.99742 * 24 22 20 28 28 C 1.46931 * 118.86973 * 306.04490 * 19 18 17 29 29 C 1.52267 * 110.67148 * 139.64258 * 12 11 10 30 30 H 1.08994 * 109.47630 * 270.16296 * 1 2 3 31 31 H 1.08997 * 109.47439 * 30.16843 * 1 2 3 32 32 H 1.09002 * 109.47240 * 150.16286 * 1 2 3 33 33 H 1.08003 * 125.99282 * 0.04840 * 3 2 1 34 34 H 1.07998 * 125.65299 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.46800 * 145.02747 * 7 6 5 36 36 H 1.08992 * 109.47647 * 25.02152 * 7 6 5 37 37 H 1.09004 * 109.90467 * 62.18114 * 11 10 8 38 38 H 1.08996 * 109.90816 * 300.92125 * 11 10 8 39 39 H 1.09002 * 111.00935 * 83.22875 * 13 12 11 40 40 H 1.08995 * 111.01443 * 207.10527 * 13 12 11 41 41 H 1.09002 * 109.47605 * 175.53354 * 16 14 10 42 42 H 1.09002 * 109.46704 * 295.52883 * 16 14 10 43 43 H 1.08995 * 109.47562 * 55.52600 * 16 14 10 44 44 H 1.09005 * 109.47725 * 56.89234 * 17 12 11 45 45 H 1.08991 * 109.49288 * 296.86494 * 17 12 11 46 46 H 1.09004 * 109.59300 * 293.75322 * 18 17 12 47 47 H 1.09004 * 109.59981 * 173.29292 * 18 17 12 48 48 H 0.96998 * 119.99563 * 354.25156 * 23 22 20 49 49 H 1.09001 * 109.59612 * 173.72304 * 28 19 18 50 50 H 1.08997 * 109.59214 * 294.19012 * 28 19 18 51 51 H 1.08998 * 109.48476 * 303.09944 * 29 12 11 52 52 H 1.08997 * 109.47989 * 63.13031 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6540 -0.0062 5 6 3.5968 -0.6508 -0.0043 6 7 2.3229 -1.0991 0.0038 7 6 1.8943 -2.5000 0.0089 8 6 1.6214 -2.9470 -1.4041 9 8 1.7707 -2.1717 -2.3249 10 7 1.2115 -4.2081 -1.6447 11 6 0.9915 -5.2478 -0.6265 12 6 0.5695 -6.5257 -1.3688 13 6 1.0986 -6.3052 -2.8039 14 6 0.9103 -4.7758 -2.9721 15 1 -0.1173 -4.5497 -3.2570 16 6 1.8838 -4.2318 -4.0195 17 6 -0.9470 -6.6625 -1.3836 18 6 -1.3390 -7.9020 -2.1962 19 7 -0.6132 -9.0634 -1.6641 20 6 -1.2895 -10.1885 -1.2745 21 1 -2.3073 -10.1118 -0.9215 22 6 -0.6669 -11.4278 -1.3333 23 7 0.3312 -11.6239 -2.1687 24 14 -1.2456 -12.8172 -0.2270 25 1 -0.4230 -14.0273 -0.4806 26 1 -1.1022 -12.4108 1.1942 27 1 -2.6711 -13.1179 -0.5144 28 6 0.8502 -8.9946 -1.5513 29 6 1.2286 -7.7502 -0.7485 30 1 -0.3634 0.0029 1.0276 31 1 -0.3634 0.8884 -0.5164 32 1 -0.3634 -0.8914 -0.5113 33 1 1.9865 2.1117 0.0007 34 1 4.4818 -1.2697 -0.0077 35 1 0.9861 -2.5999 0.6034 36 1 2.6809 -3.1190 0.4403 37 1 0.2009 -4.9371 0.0565 38 1 1.9138 -5.4270 -0.0738 39 1 2.1508 -6.5798 -2.8789 40 1 0.5000 -6.8552 -3.5300 41 1 1.6986 -4.7202 -4.9762 42 1 1.7391 -3.1568 -4.1264 43 1 2.9074 -4.4308 -3.7022 44 1 -1.3876 -5.7753 -1.8385 45 1 -1.3128 -6.7669 -0.3622 46 1 -1.0726 -7.7524 -3.2426 47 1 -2.4125 -8.0710 -2.1105 48 1 0.5775 -10.9309 -2.8011 49 1 1.2197 -9.8837 -1.0404 50 1 1.2909 -8.9320 -2.5462 51 1 2.3112 -7.6247 -0.7587 52 1 0.8857 -7.8659 0.2797 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086932432.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:34 Heat of formation + Delta-G solvation = 33.608279 kcal Electronic energy + Delta-G solvation = -31810.976557 eV Core-core repulsion = 27811.305804 eV Total energy + Delta-G solvation = -3999.670754 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.12180 -41.79430 -39.92904 -37.70643 -35.13104 -34.97815 -33.12305 -32.74829 -32.62792 -31.60902 -29.00269 -28.28652 -27.33327 -27.22127 -25.65944 -24.19749 -23.32906 -22.60464 -22.39199 -21.17013 -20.05399 -19.87091 -18.94369 -18.26155 -17.98982 -17.46293 -16.50264 -16.25794 -16.02812 -15.88164 -15.63991 -15.39977 -15.26208 -15.10087 -14.91167 -14.64982 -14.43325 -14.19250 -14.11786 -13.96208 -13.61685 -13.59070 -13.40876 -13.34145 -13.24036 -13.16017 -13.01078 -12.65495 -12.48371 -12.28387 -12.25174 -11.98326 -11.90100 -11.70032 -11.48795 -11.20627 -11.14328 -11.00774 -10.95060 -10.42927 -10.37140 -9.74953 -9.23519 -8.86910 -8.19899 -5.36388 0.94552 1.41676 1.60297 1.61019 1.66372 1.85208 2.04868 2.21308 2.67896 3.21734 3.24004 3.41647 3.58952 3.66077 3.71311 3.77720 3.79544 3.87133 4.03795 4.07428 4.13346 4.20928 4.24962 4.39361 4.41886 4.51313 4.52283 4.57805 4.64336 4.67567 4.71236 4.72095 4.78458 4.83360 4.83621 4.97913 5.01076 5.05066 5.12159 5.15406 5.21033 5.25413 5.30598 5.33119 5.40221 5.40593 5.57498 5.81062 5.88383 6.18963 6.42142 6.43891 6.98372 7.10765 7.11632 7.83055 8.26657 9.04226 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023456 B = 0.002349 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.417030 B =11915.243151 C =12182.675349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.016 4.016 3 C -0.060 4.060 4 N -0.531 5.531 5 C 0.180 3.820 6 N -0.444 5.444 7 C 0.090 3.910 8 C 0.511 3.489 9 O -0.563 6.563 10 N -0.604 5.604 11 C 0.109 3.891 12 C -0.052 4.052 13 C -0.114 4.114 14 C 0.141 3.859 15 H 0.074 0.926 16 C -0.152 4.152 17 C -0.105 4.105 18 C 0.142 3.858 19 N -0.615 5.615 20 C -0.351 4.351 21 H 0.048 0.952 22 C -0.076 4.076 23 N -0.944 5.944 24 Si 1.110 2.890 25 H -0.295 1.295 26 H -0.278 1.278 27 H -0.279 1.279 28 C 0.158 3.842 29 C -0.107 4.107 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.178 0.822 34 H 0.227 0.773 35 H 0.146 0.854 36 H 0.157 0.843 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.016 0.984 47 H 0.043 0.957 48 H 0.254 0.746 49 H 0.040 0.960 50 H 0.004 0.996 51 H 0.076 0.924 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 19.022 6.818 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.131 4.131 3 C -0.206 4.206 4 N -0.249 5.249 5 C -0.102 4.102 6 N -0.127 5.127 7 C -0.035 4.035 8 C 0.300 3.700 9 O -0.442 6.442 10 N -0.338 5.338 11 C -0.013 4.013 12 C -0.053 4.053 13 C -0.152 4.152 14 C 0.038 3.962 15 H 0.092 0.908 16 C -0.210 4.210 17 C -0.144 4.144 18 C 0.017 3.983 19 N -0.340 5.340 20 C -0.481 4.481 21 H 0.066 0.934 22 C -0.272 4.272 23 N -0.587 5.587 24 Si 0.935 3.065 25 H -0.221 1.221 26 H -0.204 1.204 27 H -0.205 1.205 28 C 0.032 3.968 29 C -0.146 4.146 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.195 0.805 34 H 0.244 0.756 35 H 0.163 0.837 36 H 0.174 0.826 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.034 0.966 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.022 0.978 51 H 0.094 0.906 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.458 18.331 6.822 19.713 hybrid contribution -0.962 0.547 -1.171 1.611 sum 1.496 18.878 5.651 19.762 Atomic orbital electron populations 1.20272 0.85485 1.03625 1.03707 1.21651 0.95747 0.86617 1.09078 1.22341 0.88454 0.99498 1.10266 1.70203 1.23532 1.10259 1.20927 1.25393 0.88115 0.91685 1.04959 1.45037 1.07162 1.06138 1.54368 1.21924 1.06955 0.80369 0.94293 1.20780 0.76917 0.80494 0.91858 1.90746 1.53437 1.53342 1.46668 1.48640 1.65710 1.10339 1.09073 1.22323 1.02889 0.85671 0.90401 1.20829 0.95637 0.93843 0.94973 1.22849 1.01745 0.93604 0.97019 1.21875 0.98788 0.92425 0.83071 0.90781 1.22010 0.98499 1.02065 0.98402 1.21749 0.94302 0.97464 1.00862 1.21080 0.95184 0.87420 0.94594 1.44317 1.02365 1.13300 1.74030 1.20189 1.00016 0.87338 1.40510 0.93435 1.27060 0.98858 1.00485 1.00800 1.70911 1.33111 1.35594 1.19040 0.82909 0.75353 0.73298 0.74904 1.22138 1.20399 1.20533 1.20711 0.83710 0.96517 0.95847 1.21719 0.99629 0.93865 0.99434 0.88897 0.89268 0.92358 0.80527 0.75650 0.83652 0.82582 0.88701 0.88634 0.90756 0.90917 0.91315 0.91865 0.93192 0.90733 0.91762 0.96595 0.93807 0.93570 0.94175 0.97788 0.90555 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.08 71.23 0.72 -0.25 16 2 C -0.02 -0.32 6.95 40.95 0.28 -0.04 16 3 C -0.06 -1.37 11.79 83.52 0.98 -0.39 16 4 N -0.53 -13.91 11.25 -200.31 -2.25 -16.17 16 5 C 0.18 3.73 12.56 180.26 2.26 5.99 16 6 N -0.44 -8.09 2.24 -518.65 -1.16 -9.26 16 7 C 0.09 1.07 5.47 85.63 0.47 1.54 16 8 C 0.51 9.92 7.70 87.66 0.68 10.60 16 9 O -0.56 -15.98 14.16 -3.06 -0.04 -16.02 16 10 N -0.60 -11.00 3.25 -788.68 -2.56 -13.56 16 11 C 0.11 1.66 5.67 86.48 0.49 2.15 16 12 C -0.05 -1.21 0.55 -51.91 -0.03 -1.24 16 13 C -0.11 -2.75 4.35 31.80 0.14 -2.61 16 14 C 0.14 3.07 3.44 45.49 0.16 3.23 16 15 H 0.07 1.66 7.74 -2.39 -0.02 1.64 16 16 C -0.15 -3.53 8.60 71.98 0.62 -2.91 16 17 C -0.10 -2.77 4.74 30.46 0.14 -2.62 16 18 C 0.14 5.25 6.19 86.40 0.53 5.78 16 19 N -0.62 -28.15 2.84 -699.52 -1.99 -30.13 16 20 C -0.35 -18.58 9.48 84.03 0.80 -17.78 16 21 H 0.05 2.54 7.94 -2.91 -0.02 2.52 16 22 C -0.08 -4.13 4.69 84.86 0.40 -3.73 16 23 N -0.94 -55.57 12.41 21.65 0.27 -55.30 16 24 Si 1.11 49.00 29.98 68.60 2.06 51.06 16 25 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 28 C 0.16 6.61 4.37 86.25 0.38 6.99 16 29 C -0.11 -3.10 4.70 30.30 0.14 -2.96 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 0.83 7.96 -2.39 -0.02 0.81 16 33 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 34 H 0.23 3.06 8.06 -2.91 -0.02 3.03 16 35 H 0.15 0.99 8.03 -2.39 -0.02 0.98 16 36 H 0.16 0.87 8.13 -2.39 -0.02 0.85 16 37 H 0.09 1.09 7.83 -2.39 -0.02 1.07 16 38 H 0.10 1.09 7.78 -2.39 -0.02 1.07 16 39 H 0.07 1.82 7.92 -2.39 -0.02 1.80 16 40 H 0.07 2.05 6.08 -2.39 -0.01 2.03 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 1.72 6.10 -2.39 -0.01 1.71 16 43 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.67 7.47 -2.38 -0.02 1.65 16 45 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.02 0.60 6.47 -2.39 -0.02 0.59 16 47 H 0.04 1.68 7.93 -2.38 -0.02 1.66 16 48 H 0.25 15.20 6.71 -92.71 -0.62 14.58 16 49 H 0.04 1.99 6.30 -2.39 -0.02 1.97 16 50 H 0.00 0.18 7.30 -2.39 -0.02 0.16 16 51 H 0.08 1.88 8.11 -2.39 -0.02 1.87 16 52 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -75.21 399.53 4.53 -70.68 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 1.05 Total: 16.95 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 9.16 Total: 1.74 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -7.70 Total: -124.42 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.04 Total: -16.02 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.06 Total: 51.06 kcal Total: -75.21 4.53 -70.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086932432.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.291 kcal (2) G-P(sol) polarization free energy of solvation -75.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds