Wall clock time and date at job start Wed Apr 1 2020 04:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34669 * 126.59094 * 2 1 4 4 N 1.34126 * 108.01731 * 179.97438 * 3 2 1 5 5 C 1.30496 * 109.26091 * 359.71878 * 4 3 2 6 6 N 1.35046 * 108.69547 * 0.44834 * 5 4 3 7 7 C 1.46507 * 126.39603 * 179.82457 * 6 5 4 8 8 C 1.50703 * 109.46742 * 264.68951 * 7 6 5 9 9 O 1.21277 * 120.00372 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99348 * 180.02562 * 8 7 6 11 11 C 1.47564 * 125.63322 * 0.02562 * 10 8 7 12 12 C 1.54144 * 104.77923 * 203.29689 * 11 10 8 13 13 C 1.54370 * 102.47791 * 323.91396 * 12 11 10 14 14 C 1.47087 * 125.62370 * 179.71608 * 10 8 7 15 15 H 1.08999 * 109.88431 * 59.60598 * 14 10 8 16 16 C 1.53000 * 109.87704 * 298.45508 * 14 10 8 17 17 C 1.52106 * 110.65100 * 206.01784 * 12 11 10 18 18 C 1.53339 * 109.44344 * 295.62486 * 17 12 11 19 19 N 1.46925 * 108.69039 * 306.70151 * 18 17 12 20 20 C 1.36940 * 120.55726 * 234.37255 * 19 18 17 21 21 H 1.07999 * 119.99823 * 27.94875 * 20 19 18 22 22 C 1.38808 * 120.00092 * 207.95730 * 20 19 18 23 23 N 1.31617 * 120.00227 * 17.46356 * 22 20 19 24 24 Si 1.86802 * 119.99924 * 197.46175 * 22 20 19 25 25 H 1.48500 * 109.47054 * 60.00004 * 24 22 20 26 26 H 1.48494 * 109.47241 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46969 * 299.99826 * 24 22 20 28 28 C 1.46941 * 118.89553 * 54.34431 * 19 18 17 29 29 C 1.52102 * 110.64836 * 81.79320 * 12 11 10 30 30 H 1.08998 * 109.47442 * 270.04534 * 1 2 3 31 31 H 1.09001 * 109.46952 * 30.05300 * 1 2 3 32 32 H 1.09004 * 109.47150 * 150.04659 * 1 2 3 33 33 H 1.07997 * 125.98419 * 359.95744 * 3 2 1 34 34 H 1.07995 * 125.65417 * 180.28996 * 5 4 3 35 35 H 1.09003 * 109.46775 * 24.68493 * 7 6 5 36 36 H 1.08993 * 109.47178 * 144.68680 * 7 6 5 37 37 H 1.09002 * 110.37744 * 322.12535 * 11 10 8 38 38 H 1.09005 * 110.37264 * 84.47377 * 11 10 8 39 39 H 1.08994 * 110.73537 * 152.98983 * 13 12 11 40 40 H 1.09008 * 110.73145 * 276.11829 * 13 12 11 41 41 H 1.08994 * 109.47263 * 61.45729 * 16 14 10 42 42 H 1.09003 * 109.46839 * 181.46121 * 16 14 10 43 43 H 1.09007 * 109.47290 * 301.45617 * 16 14 10 44 44 H 1.09004 * 109.47373 * 55.61396 * 17 12 11 45 45 H 1.08997 * 109.47804 * 175.63075 * 17 12 11 46 46 H 1.09008 * 109.60043 * 186.94395 * 18 17 12 47 47 H 1.09005 * 109.73683 * 66.54412 * 18 17 12 48 48 H 0.96996 * 120.00478 * 180.02562 * 23 22 20 49 49 H 1.08993 * 109.60549 * 185.89371 * 28 19 18 50 50 H 1.08998 * 109.72805 * 65.48936 * 28 19 18 51 51 H 1.09001 * 109.47558 * 184.36171 * 29 12 11 52 52 H 1.08999 * 109.48001 * 304.37262 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 0.0006 5 6 3.5969 -0.6508 0.0070 6 7 2.3230 -1.0990 0.0007 7 6 1.8943 -2.5000 0.0010 8 6 1.6296 -2.9445 -1.4144 9 8 1.7833 -2.1676 -2.3329 10 7 1.2210 -4.2053 -1.6594 11 6 0.9933 -5.2484 -0.6408 12 6 1.1349 -6.5804 -1.4036 13 6 0.5206 -6.2439 -2.7792 14 6 0.9223 -4.7667 -2.9857 15 1 1.8070 -4.7104 -3.6199 16 6 -0.2322 -3.9957 -3.6289 17 6 0.3380 -7.6791 -0.7169 18 6 0.9272 -7.9440 0.6737 19 7 2.3660 -8.2064 0.5333 20 6 2.9182 -9.3503 1.0449 21 1 2.3185 -10.2434 1.1408 22 6 4.2487 -9.3620 1.4404 23 7 4.8822 -8.2280 1.6527 24 14 5.1402 -10.9872 1.6715 25 1 5.1401 -11.7383 0.3905 26 1 6.5400 -10.7283 2.0940 27 1 4.4489 -11.7870 2.7144 28 6 3.2025 -7.2212 -0.1658 29 6 2.6002 -6.9605 -1.5516 30 1 -0.3634 0.0008 1.0276 31 1 -0.3633 0.8895 -0.5147 32 1 -0.3634 -0.8904 -0.5131 33 1 1.9864 2.1117 -0.0006 34 1 4.4819 -1.2697 0.0134 35 1 2.6786 -3.1197 0.4358 36 1 0.9829 -2.6009 0.5901 37 1 1.7439 -5.1803 0.1467 38 1 -0.0083 -5.1563 -0.2206 39 1 0.9488 -6.8752 -3.5578 40 1 -0.5642 -6.3478 -2.7533 41 1 0.0559 -2.9528 -3.7601 42 1 -0.4650 -4.4333 -4.5997 43 1 -1.1100 -4.0520 -2.9851 44 1 -0.7015 -7.3663 -0.6177 45 1 0.3880 -8.5907 -1.3124 46 1 0.4391 -8.8113 1.1186 47 1 0.7748 -7.0723 1.3102 48 1 5.8120 -8.2361 1.9287 49 1 4.2142 -7.6118 -0.2744 50 1 3.2285 -6.2914 0.4024 51 1 2.6822 -7.8620 -2.1589 52 1 3.1398 -6.1463 -2.0352 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086932433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:38 Heat of formation + Delta-G solvation = 50.717247 kcal Electronic energy + Delta-G solvation = -32252.794108 eV Core-core repulsion = 28253.865255 eV Total energy + Delta-G solvation = -3998.928853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.16483 -40.66893 -38.60484 -36.17860 -34.11809 -33.27746 -32.19711 -31.83711 -30.93135 -30.10279 -27.92978 -27.27035 -26.46762 -25.90373 -24.37311 -22.71610 -22.13935 -21.45256 -20.99325 -20.01179 -19.25209 -18.27425 -17.52132 -17.04571 -16.69368 -16.20841 -15.44240 -15.03335 -14.99028 -14.41837 -14.31029 -14.14495 -13.91498 -13.69703 -13.60850 -13.39680 -13.24422 -13.08080 -12.93482 -12.84238 -12.77156 -12.55103 -12.49281 -12.30966 -11.98529 -11.89487 -11.56058 -11.34706 -11.16170 -10.94794 -10.79033 -10.61590 -10.40595 -10.30657 -10.25854 -9.95333 -9.94173 -9.66320 -9.53527 -9.41877 -8.71866 -8.55070 -8.27834 -6.78151 -5.89391 -3.31684 1.91446 2.40659 2.50907 3.02365 3.22461 3.31898 3.38798 3.39425 4.19701 4.41213 4.47610 4.54343 4.61659 4.71533 4.77092 4.84620 4.86897 5.03339 5.12094 5.18806 5.27740 5.29476 5.36718 5.37783 5.41907 5.49951 5.59557 5.62440 5.67283 5.70662 5.74816 5.81187 5.89256 5.94066 6.00901 6.14318 6.15041 6.29035 6.32971 6.33613 6.48169 6.53097 6.56745 6.70365 6.74626 6.80239 7.12210 7.19977 7.39743 7.51511 7.70238 7.97425 8.09190 8.34747 9.10910 9.74185 10.29445 11.18980 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012215 B = 0.003221 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.633853 B = 8689.932147 C =10157.344950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.017 4.017 3 C -0.031 4.031 4 N -0.494 5.494 5 C 0.193 3.807 6 N -0.440 5.440 7 C 0.087 3.913 8 C 0.514 3.486 9 O -0.527 6.527 10 N -0.605 5.605 11 C 0.101 3.899 12 C -0.053 4.053 13 C -0.122 4.122 14 C 0.139 3.861 15 H 0.074 0.926 16 C -0.160 4.160 17 C -0.118 4.118 18 C 0.144 3.856 19 N -0.590 5.590 20 C -0.256 4.256 21 H 0.065 0.935 22 C 0.005 3.995 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.172 3.828 29 C -0.127 4.127 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.166 0.834 34 H 0.204 0.796 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.055 0.945 47 H 0.017 0.983 48 H 0.255 0.745 49 H 0.088 0.912 50 H 0.016 0.984 51 H 0.060 0.940 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.787 9.605 -5.455 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.131 4.131 3 C -0.179 4.179 4 N -0.211 5.211 5 C -0.089 4.089 6 N -0.123 5.123 7 C -0.040 4.040 8 C 0.300 3.700 9 O -0.403 6.403 10 N -0.340 5.340 11 C -0.021 4.021 12 C -0.054 4.054 13 C -0.160 4.160 14 C 0.036 3.964 15 H 0.092 0.908 16 C -0.218 4.218 17 C -0.158 4.158 18 C 0.018 3.982 19 N -0.313 5.313 20 C -0.385 4.385 21 H 0.083 0.917 22 C -0.194 4.194 23 N -0.546 5.546 24 Si 0.731 3.269 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.047 3.953 29 C -0.167 4.167 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.184 0.816 34 H 0.220 0.780 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.035 0.965 48 H 0.065 0.935 49 H 0.107 0.893 50 H 0.034 0.966 51 H 0.079 0.921 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.835 10.506 -5.858 16.189 hybrid contribution -0.117 -1.536 0.116 1.544 sum -10.952 8.970 -5.743 15.277 Atomic orbital electron populations 1.20184 0.87569 1.03292 1.02278 1.21178 0.94427 0.86771 1.10708 1.21965 0.88493 0.98198 1.09197 1.70257 1.22357 1.08771 1.19702 1.24928 0.87012 0.91776 1.05199 1.44889 1.07483 1.05303 1.54647 1.21688 1.04840 0.81301 0.96147 1.20237 0.77706 0.81065 0.90953 1.90755 1.51688 1.52234 1.45630 1.48618 1.65775 1.10366 1.09198 1.22612 1.01406 0.86659 0.91436 1.20966 0.97617 0.93500 0.93312 1.22828 1.01059 0.93673 0.98465 1.21579 0.97903 0.92987 0.83944 0.90771 1.22123 0.97701 1.01567 1.00429 1.21877 0.97014 0.97465 0.99425 1.20941 0.86565 0.98249 0.92468 1.44028 1.01874 1.21976 1.63412 1.19132 0.94836 0.88441 1.36100 0.91738 1.25011 0.98760 0.96632 0.98990 1.69993 1.11123 1.24451 1.49080 0.86392 0.78880 0.83558 0.78066 1.21030 1.21611 1.20873 1.20803 0.96245 0.91494 0.86808 1.22040 0.92977 0.99941 1.01708 0.91029 0.90053 0.92092 0.81641 0.77951 0.85335 0.86411 0.89415 0.91379 0.90067 0.90711 0.91523 0.91762 0.92662 0.92828 0.91642 0.92679 0.96535 0.93519 0.89345 0.96647 0.92143 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.08 36.01 0.36 -0.32 16 2 C -0.02 -0.21 6.95 -81.60 -0.57 -0.78 16 3 C -0.03 -0.42 11.79 -17.81 -0.21 -0.63 16 4 N -0.49 -7.63 11.25 -14.67 -0.17 -7.79 16 5 C 0.19 2.66 12.56 -90.38 -1.13 1.53 16 6 N -0.44 -5.66 2.24 -115.27 -0.26 -5.91 16 7 C 0.09 0.96 5.29 -5.19 -0.03 0.93 16 8 C 0.51 6.88 7.71 -10.98 -0.08 6.80 16 9 O -0.53 -8.90 15.47 5.56 0.09 -8.82 16 10 N -0.61 -7.50 3.06 -163.24 -0.50 -8.00 16 11 C 0.10 1.23 4.66 -2.86 -0.01 1.22 16 12 C -0.05 -0.71 0.54 -154.11 -0.08 -0.79 16 13 C -0.12 -1.36 5.43 -25.24 -0.14 -1.50 16 14 C 0.14 1.66 3.11 -66.84 -0.21 1.45 16 15 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.16 -1.74 9.11 37.16 0.34 -1.40 16 17 C -0.12 -1.66 4.83 -27.01 -0.13 -1.79 16 18 C 0.14 2.57 6.24 -3.63 -0.02 2.54 16 19 N -0.59 -13.14 2.98 -172.13 -0.51 -13.65 16 20 C -0.26 -6.50 9.57 -15.06 -0.14 -6.65 16 21 H 0.06 1.62 7.89 -52.49 -0.41 1.21 16 22 C 0.00 0.13 4.90 -17.43 -0.09 0.04 16 23 N -0.90 -24.58 11.20 55.49 0.62 -23.96 16 24 Si 0.90 20.71 29.59 -169.99 -5.03 15.68 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 C 0.17 3.61 5.01 -3.63 -0.02 3.59 16 29 C -0.13 -2.10 4.83 -27.01 -0.13 -2.23 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 33 H 0.17 1.81 8.06 -52.49 -0.42 1.38 16 34 H 0.20 2.26 8.06 -52.49 -0.42 1.83 16 35 H 0.13 1.28 7.85 -51.93 -0.41 0.87 16 36 H 0.12 1.03 8.02 -51.93 -0.42 0.61 16 37 H 0.09 1.18 5.56 -51.93 -0.29 0.89 16 38 H 0.07 0.73 7.97 -51.93 -0.41 0.32 16 39 H 0.08 0.88 8.01 -51.93 -0.42 0.47 16 40 H 0.07 0.74 7.70 -51.92 -0.40 0.34 16 41 H 0.07 0.86 6.88 -51.93 -0.36 0.51 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 44 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.05 0.99 7.93 -51.92 -0.41 0.58 16 47 H 0.02 0.29 7.64 -51.93 -0.40 -0.11 16 48 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 49 H 0.09 2.18 6.01 -51.93 -0.31 1.87 16 50 H 0.02 0.33 6.58 -51.93 -0.34 -0.01 16 51 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 52 H 0.05 0.78 7.85 -51.93 -0.41 0.37 16 LS Contribution 403.08 15.07 6.07 6.07 Total: -1.00 -31.78 403.08 -10.74 -42.52 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.76 Total: 1.86 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -2.30 Total: 2.01 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.81 Total: -59.32 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.78 -10.74 -42.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086932433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.237 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds