Wall clock time and date at job start Wed Apr 1 2020 04:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34669 * 126.59094 * 2 1 4 4 N 1.34126 * 108.01731 * 179.97438 * 3 2 1 5 5 C 1.30496 * 109.26091 * 359.71878 * 4 3 2 6 6 N 1.35046 * 108.69547 * 0.44834 * 5 4 3 7 7 C 1.46507 * 126.39603 * 179.82457 * 6 5 4 8 8 C 1.50703 * 109.46742 * 264.68951 * 7 6 5 9 9 O 1.21277 * 120.00372 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99348 * 180.02562 * 8 7 6 11 11 C 1.47564 * 125.63322 * 0.02562 * 10 8 7 12 12 C 1.54144 * 104.77923 * 203.29689 * 11 10 8 13 13 C 1.54370 * 102.47791 * 323.91396 * 12 11 10 14 14 C 1.47087 * 125.62370 * 179.71608 * 10 8 7 15 15 H 1.08999 * 109.88431 * 59.60598 * 14 10 8 16 16 C 1.53000 * 109.87704 * 298.45508 * 14 10 8 17 17 C 1.52106 * 110.65100 * 206.01784 * 12 11 10 18 18 C 1.53339 * 109.44344 * 295.62486 * 17 12 11 19 19 N 1.46925 * 108.69039 * 306.70151 * 18 17 12 20 20 C 1.36940 * 120.55726 * 234.37255 * 19 18 17 21 21 H 1.07999 * 119.99823 * 27.94875 * 20 19 18 22 22 C 1.38808 * 120.00092 * 207.95730 * 20 19 18 23 23 N 1.31617 * 120.00227 * 17.46356 * 22 20 19 24 24 Si 1.86802 * 119.99924 * 197.46175 * 22 20 19 25 25 H 1.48500 * 109.47054 * 60.00004 * 24 22 20 26 26 H 1.48494 * 109.47241 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46969 * 299.99826 * 24 22 20 28 28 C 1.46941 * 118.89553 * 54.34431 * 19 18 17 29 29 C 1.52102 * 110.64836 * 81.79320 * 12 11 10 30 30 H 1.08998 * 109.47442 * 270.04534 * 1 2 3 31 31 H 1.09001 * 109.46952 * 30.05300 * 1 2 3 32 32 H 1.09004 * 109.47150 * 150.04659 * 1 2 3 33 33 H 1.07997 * 125.98419 * 359.95744 * 3 2 1 34 34 H 1.07995 * 125.65417 * 180.28996 * 5 4 3 35 35 H 1.09003 * 109.46775 * 24.68493 * 7 6 5 36 36 H 1.08993 * 109.47178 * 144.68680 * 7 6 5 37 37 H 1.09002 * 110.37744 * 322.12535 * 11 10 8 38 38 H 1.09005 * 110.37264 * 84.47377 * 11 10 8 39 39 H 1.08994 * 110.73537 * 152.98983 * 13 12 11 40 40 H 1.09008 * 110.73145 * 276.11829 * 13 12 11 41 41 H 1.08994 * 109.47263 * 61.45729 * 16 14 10 42 42 H 1.09003 * 109.46839 * 181.46121 * 16 14 10 43 43 H 1.09007 * 109.47290 * 301.45617 * 16 14 10 44 44 H 1.09004 * 109.47373 * 55.61396 * 17 12 11 45 45 H 1.08997 * 109.47804 * 175.63075 * 17 12 11 46 46 H 1.09008 * 109.60043 * 186.94395 * 18 17 12 47 47 H 1.09005 * 109.73683 * 66.54412 * 18 17 12 48 48 H 0.96996 * 120.00478 * 180.02562 * 23 22 20 49 49 H 1.08993 * 109.60549 * 185.89371 * 28 19 18 50 50 H 1.08998 * 109.72805 * 65.48936 * 28 19 18 51 51 H 1.09001 * 109.47558 * 184.36171 * 29 12 11 52 52 H 1.08999 * 109.48001 * 304.37262 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 0.0006 5 6 3.5969 -0.6508 0.0070 6 7 2.3230 -1.0990 0.0007 7 6 1.8943 -2.5000 0.0010 8 6 1.6296 -2.9445 -1.4144 9 8 1.7833 -2.1676 -2.3329 10 7 1.2210 -4.2053 -1.6594 11 6 0.9933 -5.2484 -0.6408 12 6 1.1349 -6.5804 -1.4036 13 6 0.5206 -6.2439 -2.7792 14 6 0.9223 -4.7667 -2.9857 15 1 1.8070 -4.7104 -3.6199 16 6 -0.2322 -3.9957 -3.6289 17 6 0.3380 -7.6791 -0.7169 18 6 0.9272 -7.9440 0.6737 19 7 2.3660 -8.2064 0.5333 20 6 2.9182 -9.3503 1.0449 21 1 2.3185 -10.2434 1.1408 22 6 4.2487 -9.3620 1.4404 23 7 4.8822 -8.2280 1.6527 24 14 5.1402 -10.9872 1.6715 25 1 5.1401 -11.7383 0.3905 26 1 6.5400 -10.7283 2.0940 27 1 4.4489 -11.7870 2.7144 28 6 3.2025 -7.2212 -0.1658 29 6 2.6002 -6.9605 -1.5516 30 1 -0.3634 0.0008 1.0276 31 1 -0.3633 0.8895 -0.5147 32 1 -0.3634 -0.8904 -0.5131 33 1 1.9864 2.1117 -0.0006 34 1 4.4819 -1.2697 0.0134 35 1 2.6786 -3.1197 0.4358 36 1 0.9829 -2.6009 0.5901 37 1 1.7439 -5.1803 0.1467 38 1 -0.0083 -5.1563 -0.2206 39 1 0.9488 -6.8752 -3.5578 40 1 -0.5642 -6.3478 -2.7533 41 1 0.0559 -2.9528 -3.7601 42 1 -0.4650 -4.4333 -4.5997 43 1 -1.1100 -4.0520 -2.9851 44 1 -0.7015 -7.3663 -0.6177 45 1 0.3880 -8.5907 -1.3124 46 1 0.4391 -8.8113 1.1186 47 1 0.7748 -7.0723 1.3102 48 1 5.8120 -8.2361 1.9287 49 1 4.2142 -7.6118 -0.2744 50 1 3.2285 -6.2914 0.4024 51 1 2.6822 -7.8620 -2.1589 52 1 3.1398 -6.1463 -2.0352 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086932433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:37 Heat of formation + Delta-G solvation = 34.434759 kcal Electronic energy + Delta-G solvation = -32253.500169 eV Core-core repulsion = 28253.865255 eV Total energy + Delta-G solvation = -3999.634915 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.14148 -41.73478 -39.78722 -37.55750 -35.11966 -34.80887 -33.16513 -32.76203 -32.44228 -31.58218 -28.98063 -28.55133 -27.33545 -26.86803 -25.97202 -24.02231 -23.38788 -22.51552 -22.27682 -20.97820 -20.32256 -19.58113 -18.56856 -18.37146 -17.93036 -17.21669 -16.83082 -16.47881 -15.97971 -15.74416 -15.43996 -15.33986 -15.14570 -14.89737 -14.79594 -14.64942 -14.44682 -14.09638 -14.04974 -13.86839 -13.61637 -13.48154 -13.39014 -13.24645 -13.13490 -13.05867 -12.95234 -12.87686 -12.54082 -12.35249 -12.28242 -12.01653 -11.86448 -11.78475 -11.53169 -11.30797 -11.06531 -10.97738 -10.91646 -10.48682 -10.44049 -9.73108 -9.24327 -8.60376 -7.84499 -5.27306 0.94144 1.39052 1.47496 1.50118 1.55538 1.58590 2.06460 2.19316 2.53395 3.23942 3.29438 3.51281 3.64749 3.71437 3.76108 3.79572 3.84444 3.88192 4.03231 4.14140 4.23759 4.24879 4.29608 4.45677 4.50438 4.55573 4.58641 4.69032 4.72606 4.74609 4.77396 4.82213 4.83782 4.95214 4.97178 5.01046 5.07396 5.13287 5.23019 5.31215 5.33676 5.37623 5.40503 5.41226 5.46550 5.59721 5.69595 5.81603 5.82858 6.14848 6.39542 6.43343 6.96012 7.08462 7.20117 7.93723 8.41934 9.20435 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012215 B = 0.003221 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.633853 B = 8689.932147 C =10157.344950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.016 4.016 3 C -0.058 4.058 4 N -0.527 5.527 5 C 0.174 3.826 6 N -0.442 5.442 7 C 0.089 3.911 8 C 0.514 3.486 9 O -0.567 6.567 10 N -0.601 5.601 11 C 0.105 3.895 12 C -0.053 4.053 13 C -0.108 4.108 14 C 0.134 3.866 15 H 0.055 0.945 16 C -0.150 4.150 17 C -0.105 4.105 18 C 0.138 3.862 19 N -0.608 5.608 20 C -0.258 4.258 21 H 0.065 0.935 22 C -0.047 4.047 23 N -0.931 5.931 24 Si 0.956 3.044 25 H -0.282 1.282 26 H -0.298 1.298 27 H -0.276 1.276 28 C 0.181 3.819 29 C -0.112 4.112 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.183 0.817 34 H 0.218 0.782 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.050 0.950 47 H 0.026 0.974 48 H 0.247 0.753 49 H 0.043 0.957 50 H 0.006 0.994 51 H 0.049 0.951 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.003 9.167 -5.811 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C -0.204 4.204 4 N -0.245 5.245 5 C -0.108 4.108 6 N -0.125 5.125 7 C -0.037 4.037 8 C 0.302 3.698 9 O -0.446 6.446 10 N -0.334 5.334 11 C -0.016 4.016 12 C -0.054 4.054 13 C -0.145 4.145 14 C 0.031 3.969 15 H 0.073 0.927 16 C -0.208 4.208 17 C -0.144 4.144 18 C 0.013 3.987 19 N -0.332 5.332 20 C -0.388 4.388 21 H 0.082 0.918 22 C -0.243 4.243 23 N -0.577 5.577 24 Si 0.785 3.215 25 H -0.208 1.208 26 H -0.225 1.225 27 H -0.202 1.202 28 C 0.055 3.945 29 C -0.151 4.151 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.201 0.799 34 H 0.234 0.766 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.044 0.956 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.024 0.976 51 H 0.068 0.932 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.095 10.040 -6.219 18.389 hybrid contribution 0.858 -1.414 0.222 1.668 sum -13.237 8.626 -5.997 16.900 Atomic orbital electron populations 1.20296 0.85014 1.03839 1.03790 1.21762 0.96007 0.86318 1.09005 1.22401 0.88224 0.99599 1.10178 1.70204 1.23757 1.09804 1.20754 1.25272 0.88114 0.91806 1.05613 1.45023 1.07248 1.06103 1.54171 1.21846 1.06392 0.80437 0.95047 1.20568 0.76929 0.80945 0.91382 1.90743 1.53472 1.53368 1.46996 1.48639 1.65133 1.10084 1.09582 1.22609 1.02608 0.85684 0.90736 1.20876 0.95149 0.94024 0.95332 1.22756 1.02484 0.92625 0.96658 1.21662 0.97766 0.93878 0.83574 0.92699 1.22029 0.97391 0.99843 1.01548 1.21736 0.98793 0.97410 0.96448 1.21147 0.83882 0.98418 0.95211 1.44267 1.03883 1.21393 1.63633 1.19439 0.95031 0.89702 1.34669 0.91776 1.25634 0.99685 0.98980 0.99951 1.70133 1.10748 1.25977 1.50851 0.85518 0.77378 0.80662 0.77961 1.20810 1.22467 1.20218 1.20557 0.94451 0.90400 0.89064 1.21789 0.95465 0.99505 0.98347 0.88892 0.88787 0.92219 0.79946 0.76603 0.84527 0.83548 0.90817 0.88369 0.89669 0.87962 0.94022 0.90037 0.91309 0.88822 0.92261 0.93122 0.95620 0.94371 0.93814 0.97645 0.93175 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.08 71.24 0.72 -0.41 16 2 C -0.02 -0.39 6.95 40.95 0.28 -0.11 16 3 C -0.06 -1.55 11.79 83.52 0.98 -0.57 16 4 N -0.53 -16.60 11.25 -200.32 -2.25 -18.85 16 5 C 0.17 4.87 12.56 180.26 2.26 7.14 16 6 N -0.44 -11.05 2.24 -518.60 -1.16 -12.21 16 7 C 0.09 1.81 5.29 85.63 0.45 2.26 16 8 C 0.51 13.06 7.71 87.66 0.68 13.74 16 9 O -0.57 -18.94 15.47 -3.02 -0.05 -18.98 16 10 N -0.60 -13.52 3.06 -788.75 -2.41 -15.93 16 11 C 0.11 2.23 4.66 86.56 0.40 2.63 16 12 C -0.05 -1.25 0.54 -51.92 -0.03 -1.28 16 13 C -0.11 -1.97 5.43 31.56 0.17 -1.80 16 14 C 0.13 2.86 3.11 45.38 0.14 3.00 16 15 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 16 C -0.15 -2.82 9.11 71.98 0.66 -2.16 16 17 C -0.10 -2.53 4.83 30.41 0.15 -2.38 16 18 C 0.14 4.62 6.24 86.41 0.54 5.16 16 19 N -0.61 -26.90 2.98 -698.48 -2.08 -28.99 16 20 C -0.26 -13.18 9.57 84.03 0.80 -12.37 16 21 H 0.06 3.21 7.89 -2.91 -0.02 3.19 16 22 C -0.05 -2.49 4.90 84.86 0.42 -2.07 16 23 N -0.93 -52.29 11.20 21.65 0.24 -52.05 16 24 Si 0.96 43.22 29.59 68.60 2.03 45.25 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 28 C 0.18 7.70 5.01 86.41 0.43 8.13 16 29 C -0.11 -3.61 4.83 30.41 0.15 -3.46 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 0.98 7.95 -2.38 -0.02 0.96 16 33 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 34 H 0.22 5.00 8.06 -2.91 -0.02 4.97 16 35 H 0.14 2.57 7.85 -2.39 -0.02 2.55 16 36 H 0.15 2.11 8.02 -2.39 -0.02 2.09 16 37 H 0.07 1.82 5.56 -2.39 -0.01 1.81 16 38 H 0.10 1.58 7.97 -2.38 -0.02 1.56 16 39 H 0.08 1.55 8.01 -2.39 -0.02 1.53 16 40 H 0.10 1.41 7.70 -2.38 -0.02 1.39 16 41 H 0.04 1.01 6.88 -2.39 -0.02 0.99 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.09 1.60 8.09 -2.38 -0.02 1.58 16 45 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.05 1.72 7.93 -2.38 -0.02 1.70 16 47 H 0.03 0.82 7.64 -2.38 -0.02 0.81 16 48 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 49 H 0.04 2.25 6.01 -2.39 -0.01 2.23 16 50 H 0.01 0.25 6.58 -2.39 -0.02 0.23 16 51 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.05 1.56 7.85 -2.39 -0.02 1.54 16 Total: -1.00 -71.79 403.08 4.42 -67.37 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.90 Total: 18.95 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 9.21 Total: 15.45 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -7.67 Total: -128.03 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.05 Total: -18.98 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -71.79 4.42 -67.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086932433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.802 kcal (2) G-P(sol) polarization free energy of solvation -71.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds