Wall clock time and date at job start Wed Apr 1 2020 04:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34946 * 126.03753 * 2 1 4 4 C 1.35317 * 107.74663 * 180.02562 * 3 2 1 5 5 C 1.50692 * 126.04013 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47438 * 90.00022 * 5 4 3 7 7 O 1.21280 * 119.99457 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99933 * 180.27708 * 6 5 4 9 9 C 1.46500 * 119.99590 * 179.72431 * 8 6 5 10 10 H 1.08995 * 113.22552 * 25.33085 * 9 8 6 11 11 C 1.50005 * 114.12343 * 252.51810 * 9 8 6 12 12 H 1.08995 * 112.50521 * 321.29778 * 11 9 8 13 13 C 1.51206 * 126.17000 * 104.78758 * 11 9 8 14 14 C 1.54089 * 106.19096 * 161.43112 * 13 11 9 15 15 C 1.52499 * 112.67208 * 304.56249 * 14 13 11 16 16 N 1.48404 * 111.87124 * 46.79139 * 15 14 13 17 17 C 1.36935 * 123.16871 * 128.11875 * 16 15 14 18 18 H 1.07996 * 120.00095 * 221.18081 * 17 16 15 19 19 C 1.38810 * 119.99516 * 41.18571 * 17 16 15 20 20 N 1.31629 * 119.99887 * 210.53102 * 19 17 16 21 21 Si 1.86796 * 120.00409 * 30.53035 * 19 17 16 22 22 H 1.48510 * 109.47109 * 84.69625 * 21 19 17 23 23 H 1.48499 * 109.47163 * 204.69299 * 21 19 17 24 24 H 1.48496 * 109.47318 * 324.69335 * 21 19 17 25 25 C 1.45375 * 113.66453 * 308.16064 * 16 15 14 26 26 H 1.09001 * 112.09564 * 300.22903 * 25 16 15 27 27 C 1.50269 * 126.81079 * 156.13791 * 25 16 15 28 28 C 1.52996 * 114.19777 * 106.83523 * 27 25 16 29 29 C 1.52998 * 114.04783 * 334.33089 * 27 25 16 30 30 C 1.39864 * 107.91717 * 0.26122 * 4 3 2 31 31 N 1.30845 * 108.20596 * 359.55492 * 30 4 3 32 32 H 1.09001 * 109.46721 * 89.99765 * 1 2 3 33 33 H 1.08996 * 109.47246 * 210.00283 * 1 2 3 34 34 H 1.09000 * 109.46981 * 330.00245 * 1 2 3 35 35 H 1.08003 * 126.12923 * 359.97438 * 3 2 1 36 36 H 1.08998 * 109.47323 * 329.99400 * 5 4 3 37 37 H 1.09005 * 109.46811 * 209.99914 * 5 4 3 38 38 H 0.96998 * 120.00258 * 359.71492 * 8 6 5 39 39 H 1.08997 * 110.10312 * 280.60404 * 13 11 9 40 40 H 1.09005 * 110.10019 * 42.15429 * 13 11 9 41 41 H 1.08995 * 108.84226 * 65.39087 * 14 13 11 42 42 H 1.09003 * 108.84115 * 183.74455 * 14 13 11 43 43 H 1.09004 * 108.99724 * 167.40749 * 15 14 13 44 44 H 1.08996 * 109.00086 * 286.25199 * 15 14 13 45 45 H 0.96998 * 120.00315 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.47129 * 173.86074 * 28 27 25 47 47 H 1.09000 * 109.47050 * 293.85500 * 28 27 25 48 48 H 1.08995 * 109.47695 * 53.86270 * 28 27 25 49 49 H 1.09002 * 109.47020 * 332.06623 * 29 27 25 50 50 H 1.08993 * 109.47016 * 92.06803 * 29 27 25 51 51 H 1.09001 * 109.46861 * 212.07232 * 29 27 25 52 52 H 1.08005 * 125.89873 * 179.73468 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 -0.0006 5 6 4.7680 1.5452 -0.0002 6 6 5.1765 1.8372 1.4207 7 8 4.5361 1.3774 2.3423 8 7 6.2497 2.6143 1.6672 9 6 6.6432 2.9030 3.0485 10 1 6.3177 2.1408 3.7564 11 6 6.3569 4.3089 3.4864 12 1 6.5488 5.0382 2.6995 13 6 5.2366 4.7477 4.4022 14 6 5.6283 6.1445 4.9215 15 6 6.9971 6.1591 5.5938 16 7 8.0182 5.4490 4.7843 17 6 9.2225 6.0042 4.4430 18 1 9.6210 5.8610 3.4495 19 6 9.9311 6.7510 5.3741 20 7 10.7033 7.7394 4.9747 21 14 9.7890 6.3536 7.1937 22 1 10.7429 5.2691 7.5395 23 1 10.1067 7.5652 7.9913 24 1 8.4045 5.9103 7.4969 25 6 7.6192 4.1087 4.3870 26 1 7.4180 3.4691 5.2464 27 6 8.1333 3.3278 3.2105 28 6 9.0730 2.1792 3.5825 29 6 8.6624 4.1973 2.0682 30 6 3.5347 -0.7321 -0.0070 31 7 2.2891 -1.1328 -0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 1.9282 2.1194 -0.0004 36 1 4.5442 2.4804 -0.5135 37 1 5.5820 1.0343 -0.5146 38 1 6.7617 2.9822 0.9300 39 1 4.2997 4.8032 3.8479 40 1 5.1383 4.0507 5.2345 41 1 5.6403 6.8411 4.0834 42 1 4.8793 6.4754 5.6410 43 1 7.3121 7.1930 5.7349 44 1 6.9192 5.6761 6.5678 45 1 11.1988 8.2611 5.6253 46 1 9.3113 1.6011 2.6897 47 1 9.9908 2.5842 4.0087 48 1 8.5865 1.5340 4.3139 49 1 8.1490 5.1588 2.0757 50 1 9.7329 4.3560 2.1983 51 1 8.4822 3.6966 1.1170 52 1 4.4054 -1.3710 -0.0131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087276720.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:38 Heat of formation + Delta-G solvation = 111.281625 kcal Electronic energy + Delta-G solvation = -31627.462162 eV Core-core repulsion = 27631.159578 eV Total energy + Delta-G solvation = -3996.302585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.39136 -40.97457 -38.78201 -35.47159 -33.78970 -33.22851 -32.96114 -31.81602 -30.80503 -29.49881 -28.54189 -27.23804 -26.27815 -25.67694 -24.37109 -22.27631 -21.36693 -21.26146 -20.29130 -19.95026 -19.56695 -18.32027 -17.03973 -16.95295 -16.54003 -15.68331 -15.52252 -15.21732 -14.85410 -14.58551 -14.23078 -14.00167 -13.87912 -13.65335 -13.42760 -13.29541 -13.09144 -13.02050 -12.79435 -12.68163 -12.56026 -12.46502 -12.09143 -11.91731 -11.70568 -11.64121 -11.34505 -11.15131 -11.02591 -10.74610 -10.67006 -10.46888 -10.35462 -10.25359 -10.07019 -9.71075 -9.57165 -9.54669 -9.53494 -8.98649 -8.58886 -8.50571 -8.26228 -6.57606 -6.04640 -3.40466 1.74621 2.35474 2.61327 2.84552 3.40943 3.51183 3.54271 3.56677 4.29854 4.57551 4.64930 4.67849 4.80282 4.83599 4.86851 4.93067 5.04793 5.09413 5.11750 5.16155 5.22003 5.31576 5.48675 5.55665 5.61640 5.63346 5.76071 5.83784 5.93825 5.94968 6.00972 6.02434 6.10474 6.17632 6.30742 6.39553 6.41586 6.48866 6.49280 6.54918 6.61031 6.65702 6.67586 6.82653 6.83715 6.88758 6.94419 6.98804 7.18788 7.54510 7.77247 8.01449 8.43767 8.47665 8.96593 9.72286 10.30342 11.10797 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021888 B = 0.002542 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.922915 B =11013.202081 C =11577.142620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.378 5.378 3 C 0.068 3.932 4 C -0.216 4.216 5 C -0.062 4.062 6 C 0.509 3.491 7 O -0.538 6.538 8 N -0.716 5.716 9 C 0.144 3.856 10 H 0.110 0.890 11 C -0.167 4.167 12 H 0.096 0.904 13 C -0.087 4.087 14 C -0.131 4.131 15 C 0.141 3.859 16 N -0.580 5.580 17 C -0.266 4.266 18 H 0.085 0.915 19 C 0.045 3.955 20 N -0.889 5.889 21 Si 0.845 3.155 22 H -0.289 1.289 23 H -0.299 1.299 24 H -0.256 1.256 25 C 0.146 3.854 26 H 0.050 0.950 27 C -0.063 4.063 28 C -0.133 4.133 29 C -0.118 4.118 30 C 0.063 3.937 31 N -0.301 5.301 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.171 0.829 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.398 0.602 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.025 0.975 45 H 0.262 0.738 46 H 0.048 0.952 47 H 0.064 0.936 48 H 0.049 0.951 49 H 0.074 0.926 50 H 0.068 0.932 51 H 0.037 0.963 52 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.214 -11.556 -12.120 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.160 5.160 3 C -0.078 4.078 4 C -0.228 4.228 5 C -0.103 4.103 6 C 0.295 3.705 7 O -0.414 6.414 8 N -0.367 5.367 9 C 0.039 3.961 10 H 0.128 0.872 11 C -0.188 4.188 12 H 0.114 0.886 13 C -0.125 4.125 14 C -0.170 4.170 15 C 0.016 3.984 16 N -0.303 5.303 17 C -0.393 4.393 18 H 0.102 0.898 19 C -0.157 4.157 20 N -0.528 5.528 21 Si 0.673 3.327 22 H -0.216 1.216 23 H -0.226 1.226 24 H -0.181 1.181 25 C 0.038 3.962 26 H 0.067 0.933 27 C -0.065 4.065 28 C -0.190 4.190 29 C -0.175 4.175 30 C -0.123 4.123 31 N -0.123 5.123 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.188 0.812 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.234 0.766 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.042 0.958 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.056 0.944 52 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -16.472 -12.706 -11.405 23.724 hybrid contribution 0.859 0.877 0.969 1.564 sum -15.613 -11.829 -10.436 22.195 Atomic orbital electron populations 1.21826 0.74360 1.04520 1.03121 1.48364 1.06530 1.03877 1.57266 1.22238 0.90850 0.93267 1.01447 1.19411 0.93458 0.93651 1.16297 1.19921 0.95900 0.99961 0.94555 1.20693 0.80325 0.78057 0.91401 1.90691 1.52922 1.51429 1.46361 1.46095 1.30107 1.51369 1.09151 1.22342 0.94751 0.96329 0.82701 0.87231 1.23374 0.99372 0.95998 1.00053 0.88572 1.21066 0.96909 0.96662 0.97830 1.21958 0.98246 0.96523 1.00288 1.21383 0.87288 0.96902 0.92809 1.44045 1.14671 1.08230 1.63311 1.18769 0.94959 1.28968 0.96649 0.89754 1.25673 0.95822 0.96588 0.97572 1.70003 1.31253 1.16887 1.34705 0.87402 0.79479 0.77616 0.88244 1.21635 1.22634 1.18125 1.21563 0.93343 0.88656 0.92677 0.93277 1.21883 0.92284 0.95420 0.96866 1.21697 0.99869 0.97042 1.00423 1.21621 1.02529 0.99096 0.94247 1.23708 0.95152 0.94421 0.99047 1.77322 1.01669 1.08281 1.24981 0.90887 0.89389 0.89537 0.81187 0.88572 0.88295 0.76638 0.93661 0.92803 0.92553 0.93118 0.91854 0.95751 0.92811 0.93266 0.91731 0.93140 0.90755 0.91282 0.94421 0.80274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.47 59.85 0.69 1.31 16 2 N -0.38 -3.99 4.01 -68.16 -0.27 -4.26 16 3 C 0.07 0.69 11.40 -17.22 -0.20 0.49 16 4 C -0.22 -2.34 4.59 -105.06 -0.48 -2.83 16 5 C -0.06 -0.55 6.18 -29.04 -0.18 -0.73 16 6 C 0.51 6.50 7.82 -10.98 -0.09 6.41 16 7 O -0.54 -9.23 15.67 5.56 0.09 -9.14 16 8 N -0.72 -8.69 5.33 -57.64 -0.31 -9.00 16 9 C 0.14 2.14 3.48 -71.81 -0.25 1.89 16 10 H 0.11 1.81 7.48 -51.93 -0.39 1.43 16 11 C -0.17 -2.75 2.88 -95.23 -0.27 -3.03 16 12 H 0.10 1.68 6.02 -51.93 -0.31 1.37 16 13 C -0.09 -1.44 6.12 -27.07 -0.17 -1.60 16 14 C -0.13 -2.28 5.90 -26.42 -0.16 -2.44 16 15 C 0.14 2.96 4.50 -3.25 -0.01 2.95 16 16 N -0.58 -12.92 2.34 -169.24 -0.40 -13.31 16 17 C -0.27 -6.86 9.28 -15.06 -0.14 -7.00 16 18 H 0.09 2.27 5.46 -52.49 -0.29 1.99 16 19 C 0.05 1.25 5.05 -17.43 -0.09 1.17 16 20 N -0.89 -26.05 13.97 55.49 0.78 -25.27 16 21 Si 0.84 21.13 27.30 -169.99 -4.64 16.49 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 24 H -0.26 -6.11 4.81 56.52 0.27 -5.84 16 25 C 0.15 2.75 3.01 -71.98 -0.22 2.54 16 26 H 0.05 0.97 8.00 -51.93 -0.42 0.56 16 27 C -0.06 -1.00 1.38 -158.40 -0.22 -1.22 16 28 C -0.13 -1.99 9.22 37.16 0.34 -1.65 16 29 C -0.12 -1.83 6.91 37.16 0.26 -1.57 16 30 C 0.06 0.73 11.96 -17.36 -0.21 0.52 16 31 N -0.30 -3.84 12.58 30.63 0.39 -3.46 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.40 3.94 6.76 -40.82 -0.28 3.66 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.90 8.06 -51.93 -0.42 0.48 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.43 7.12 -51.93 -0.37 1.06 16 44 H 0.02 0.53 6.47 -51.93 -0.34 0.19 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 49 H 0.07 1.30 5.67 -51.93 -0.29 1.01 16 50 H 0.07 1.20 7.23 -51.93 -0.38 0.82 16 51 H 0.04 0.45 6.59 -51.93 -0.34 0.11 16 52 H 0.18 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 400.20 15.07 6.03 6.03 Total: -1.00 -34.01 400.20 -8.30 -42.32 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -8.57 Total: 4.40 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -1.39 Total: -4.79 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.18 Total: -55.30 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.64 Total: 16.49 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.01 -8.30 -42.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087276720.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.599 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds