Wall clock time and date at job start Wed Apr 1 2020 04:00:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46508 * 1
3 3 C 1.34946 * 126.03753 * 2 1
4 4 C 1.35317 * 107.74663 * 180.02562 * 3 2 1
5 5 C 1.50692 * 126.04013 * 180.02562 * 4 3 2
6 6 C 1.50703 * 109.47438 * 90.00022 * 5 4 3
7 7 O 1.21280 * 119.99457 * 359.97438 * 6 5 4
8 8 N 1.34775 * 119.99933 * 180.27708 * 6 5 4
9 9 C 1.46500 * 119.99590 * 179.72431 * 8 6 5
10 10 H 1.08995 * 113.22552 * 25.33085 * 9 8 6
11 11 C 1.50005 * 114.12343 * 252.51810 * 9 8 6
12 12 H 1.08995 * 112.50521 * 321.29778 * 11 9 8
13 13 C 1.51206 * 126.17000 * 104.78758 * 11 9 8
14 14 C 1.54089 * 106.19096 * 161.43112 * 13 11 9
15 15 C 1.52499 * 112.67208 * 304.56249 * 14 13 11
16 16 N 1.48404 * 111.87124 * 46.79139 * 15 14 13
17 17 C 1.36935 * 123.16871 * 128.11875 * 16 15 14
18 18 H 1.07996 * 120.00095 * 221.18081 * 17 16 15
19 19 C 1.38810 * 119.99516 * 41.18571 * 17 16 15
20 20 N 1.31629 * 119.99887 * 210.53102 * 19 17 16
21 21 Si 1.86796 * 120.00409 * 30.53035 * 19 17 16
22 22 H 1.48510 * 109.47109 * 84.69625 * 21 19 17
23 23 H 1.48499 * 109.47163 * 204.69299 * 21 19 17
24 24 H 1.48496 * 109.47318 * 324.69335 * 21 19 17
25 25 C 1.45375 * 113.66453 * 308.16064 * 16 15 14
26 26 H 1.09001 * 112.09564 * 300.22903 * 25 16 15
27 27 C 1.50269 * 126.81079 * 156.13791 * 25 16 15
28 28 C 1.52996 * 114.19777 * 106.83523 * 27 25 16
29 29 C 1.52998 * 114.04783 * 334.33089 * 27 25 16
30 30 C 1.39864 * 107.91717 * 0.26122 * 4 3 2
31 31 N 1.30845 * 108.20596 * 359.55492 * 30 4 3
32 32 H 1.09001 * 109.46721 * 89.99765 * 1 2 3
33 33 H 1.08996 * 109.47246 * 210.00283 * 1 2 3
34 34 H 1.09000 * 109.46981 * 330.00245 * 1 2 3
35 35 H 1.08003 * 126.12923 * 359.97438 * 3 2 1
36 36 H 1.08998 * 109.47323 * 329.99400 * 5 4 3
37 37 H 1.09005 * 109.46811 * 209.99914 * 5 4 3
38 38 H 0.96998 * 120.00258 * 359.71492 * 8 6 5
39 39 H 1.08997 * 110.10312 * 280.60404 * 13 11 9
40 40 H 1.09005 * 110.10019 * 42.15429 * 13 11 9
41 41 H 1.08995 * 108.84226 * 65.39087 * 14 13 11
42 42 H 1.09003 * 108.84115 * 183.74455 * 14 13 11
43 43 H 1.09004 * 108.99724 * 167.40749 * 15 14 13
44 44 H 1.08996 * 109.00086 * 286.25199 * 15 14 13
45 45 H 0.96998 * 120.00315 * 180.02562 * 20 19 17
46 46 H 1.09004 * 109.47129 * 173.86074 * 28 27 25
47 47 H 1.09000 * 109.47050 * 293.85500 * 28 27 25
48 48 H 1.08995 * 109.47695 * 53.86270 * 28 27 25
49 49 H 1.09002 * 109.47020 * 332.06623 * 29 27 25
50 50 H 1.08993 * 109.47016 * 92.06803 * 29 27 25
51 51 H 1.09001 * 109.46861 * 212.07232 * 29 27 25
52 52 H 1.08005 * 125.89873 * 179.73468 * 30 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2590 1.0912 0.0000
4 6 3.5438 0.6665 -0.0006
5 6 4.7680 1.5452 -0.0002
6 6 5.1765 1.8372 1.4207
7 8 4.5361 1.3774 2.3423
8 7 6.2497 2.6143 1.6672
9 6 6.6432 2.9030 3.0485
10 1 6.3177 2.1408 3.7564
11 6 6.3569 4.3089 3.4864
12 1 6.5488 5.0382 2.6995
13 6 5.2366 4.7477 4.4022
14 6 5.6283 6.1445 4.9215
15 6 6.9971 6.1591 5.5938
16 7 8.0182 5.4490 4.7843
17 6 9.2225 6.0042 4.4430
18 1 9.6210 5.8610 3.4495
19 6 9.9311 6.7510 5.3741
20 7 10.7033 7.7394 4.9747
21 14 9.7890 6.3536 7.1937
22 1 10.7429 5.2691 7.5395
23 1 10.1067 7.5652 7.9913
24 1 8.4045 5.9103 7.4969
25 6 7.6192 4.1087 4.3870
26 1 7.4180 3.4691 5.2464
27 6 8.1333 3.3278 3.2105
28 6 9.0730 2.1792 3.5825
29 6 8.6624 4.1973 2.0682
30 6 3.5347 -0.7321 -0.0070
31 7 2.2891 -1.1328 -0.0005
32 1 -0.3633 0.0000 -1.0277
33 1 -0.3633 -0.8899 0.5139
34 1 -0.3633 0.8900 0.5138
35 1 1.9282 2.1194 -0.0004
36 1 4.5442 2.4804 -0.5135
37 1 5.5820 1.0343 -0.5146
38 1 6.7617 2.9822 0.9300
39 1 4.2997 4.8032 3.8479
40 1 5.1383 4.0507 5.2345
41 1 5.6403 6.8411 4.0834
42 1 4.8793 6.4754 5.6410
43 1 7.3121 7.1930 5.7349
44 1 6.9192 5.6761 6.5678
45 1 11.1988 8.2611 5.6253
46 1 9.3113 1.6011 2.6897
47 1 9.9908 2.5842 4.0087
48 1 8.5865 1.5340 4.3139
49 1 8.1490 5.1588 2.0757
50 1 9.7329 4.3560 2.1983
51 1 8.4822 3.6966 1.1170
52 1 4.4054 -1.3710 -0.0131
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001087276720.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:00:38
Heat of formation + Delta-G solvation = 111.281625 kcal
Electronic energy + Delta-G solvation = -31627.462162 eV
Core-core repulsion = 27631.159578 eV
Total energy + Delta-G solvation = -3996.302585 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-41.39136 -40.97457 -38.78201 -35.47159 -33.78970 -33.22851 -32.96114 -31.81602
-30.80503 -29.49881 -28.54189 -27.23804 -26.27815 -25.67694 -24.37109 -22.27631
-21.36693 -21.26146 -20.29130 -19.95026 -19.56695 -18.32027 -17.03973 -16.95295
-16.54003 -15.68331 -15.52252 -15.21732 -14.85410 -14.58551 -14.23078 -14.00167
-13.87912 -13.65335 -13.42760 -13.29541 -13.09144 -13.02050 -12.79435 -12.68163
-12.56026 -12.46502 -12.09143 -11.91731 -11.70568 -11.64121 -11.34505 -11.15131
-11.02591 -10.74610 -10.67006 -10.46888 -10.35462 -10.25359 -10.07019 -9.71075
-9.57165 -9.54669 -9.53494 -8.98649 -8.58886 -8.50571 -8.26228 -6.57606
-6.04640 -3.40466 1.74621 2.35474 2.61327 2.84552 3.40943 3.51183
3.54271 3.56677 4.29854 4.57551 4.64930 4.67849 4.80282 4.83599
4.86851 4.93067 5.04793 5.09413 5.11750 5.16155 5.22003 5.31576
5.48675 5.55665 5.61640 5.63346 5.76071 5.83784 5.93825 5.94968
6.00972 6.02434 6.10474 6.17632 6.30742 6.39553 6.41586 6.48866
6.49280 6.54918 6.61031 6.65702 6.67586 6.82653 6.83715 6.88758
6.94419 6.98804 7.18788 7.54510 7.77247 8.01449 8.43767 8.47665
8.96593 9.72286 10.30342 11.10797
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.021888 B = 0.002542 C = 0.002418
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1278.922915 B =11013.202081 C =11577.142620
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.103 3.897
2 N -0.378 5.378
3 C 0.068 3.932
4 C -0.216 4.216
5 C -0.062 4.062
6 C 0.509 3.491
7 O -0.538 6.538
8 N -0.716 5.716
9 C 0.144 3.856
10 H 0.110 0.890
11 C -0.167 4.167
12 H 0.096 0.904
13 C -0.087 4.087
14 C -0.131 4.131
15 C 0.141 3.859
16 N -0.580 5.580
17 C -0.266 4.266
18 H 0.085 0.915
19 C 0.045 3.955
20 N -0.889 5.889
21 Si 0.845 3.155
22 H -0.289 1.289
23 H -0.299 1.299
24 H -0.256 1.256
25 C 0.146 3.854
26 H 0.050 0.950
27 C -0.063 4.063
28 C -0.133 4.133
29 C -0.118 4.118
30 C 0.063 3.937
31 N -0.301 5.301
32 H 0.073 0.927
33 H 0.087 0.913
34 H 0.086 0.914
35 H 0.171 0.829
36 H 0.096 0.904
37 H 0.099 0.901
38 H 0.398 0.602
39 H 0.045 0.955
40 H 0.053 0.947
41 H 0.056 0.944
42 H 0.050 0.950
43 H 0.063 0.937
44 H 0.025 0.975
45 H 0.262 0.738
46 H 0.048 0.952
47 H 0.064 0.936
48 H 0.049 0.951
49 H 0.074 0.926
50 H 0.068 0.932
51 H 0.037 0.963
52 H 0.180 0.820
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.214 -11.556 -12.120 22.625
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.038 4.038
2 N -0.160 5.160
3 C -0.078 4.078
4 C -0.228 4.228
5 C -0.103 4.103
6 C 0.295 3.705
7 O -0.414 6.414
8 N -0.367 5.367
9 C 0.039 3.961
10 H 0.128 0.872
11 C -0.188 4.188
12 H 0.114 0.886
13 C -0.125 4.125
14 C -0.170 4.170
15 C 0.016 3.984
16 N -0.303 5.303
17 C -0.393 4.393
18 H 0.102 0.898
19 C -0.157 4.157
20 N -0.528 5.528
21 Si 0.673 3.327
22 H -0.216 1.216
23 H -0.226 1.226
24 H -0.181 1.181
25 C 0.038 3.962
26 H 0.067 0.933
27 C -0.065 4.065
28 C -0.190 4.190
29 C -0.175 4.175
30 C -0.123 4.123
31 N -0.123 5.123
32 H 0.091 0.909
33 H 0.106 0.894
34 H 0.105 0.895
35 H 0.188 0.812
36 H 0.114 0.886
37 H 0.117 0.883
38 H 0.234 0.766
39 H 0.063 0.937
40 H 0.072 0.928
41 H 0.074 0.926
42 H 0.069 0.931
43 H 0.081 0.919
44 H 0.042 0.958
45 H 0.072 0.928
46 H 0.067 0.933
47 H 0.083 0.917
48 H 0.069 0.931
49 H 0.092 0.908
50 H 0.087 0.913
51 H 0.056 0.944
52 H 0.197 0.803
Dipole moment (debyes) X Y Z Total
from point charges -16.472 -12.706 -11.405 23.724
hybrid contribution 0.859 0.877 0.969 1.564
sum -15.613 -11.829 -10.436 22.195
Atomic orbital electron populations
1.21826 0.74360 1.04520 1.03121 1.48364 1.06530 1.03877 1.57266
1.22238 0.90850 0.93267 1.01447 1.19411 0.93458 0.93651 1.16297
1.19921 0.95900 0.99961 0.94555 1.20693 0.80325 0.78057 0.91401
1.90691 1.52922 1.51429 1.46361 1.46095 1.30107 1.51369 1.09151
1.22342 0.94751 0.96329 0.82701 0.87231 1.23374 0.99372 0.95998
1.00053 0.88572 1.21066 0.96909 0.96662 0.97830 1.21958 0.98246
0.96523 1.00288 1.21383 0.87288 0.96902 0.92809 1.44045 1.14671
1.08230 1.63311 1.18769 0.94959 1.28968 0.96649 0.89754 1.25673
0.95822 0.96588 0.97572 1.70003 1.31253 1.16887 1.34705 0.87402
0.79479 0.77616 0.88244 1.21635 1.22634 1.18125 1.21563 0.93343
0.88656 0.92677 0.93277 1.21883 0.92284 0.95420 0.96866 1.21697
0.99869 0.97042 1.00423 1.21621 1.02529 0.99096 0.94247 1.23708
0.95152 0.94421 0.99047 1.77322 1.01669 1.08281 1.24981 0.90887
0.89389 0.89537 0.81187 0.88572 0.88295 0.76638 0.93661 0.92803
0.92553 0.93118 0.91854 0.95751 0.92811 0.93266 0.91731 0.93140
0.90755 0.91282 0.94421 0.80274
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.63 11.47 59.85 0.69 1.31 16
2 N -0.38 -3.99 4.01 -68.16 -0.27 -4.26 16
3 C 0.07 0.69 11.40 -17.22 -0.20 0.49 16
4 C -0.22 -2.34 4.59 -105.06 -0.48 -2.83 16
5 C -0.06 -0.55 6.18 -29.04 -0.18 -0.73 16
6 C 0.51 6.50 7.82 -10.98 -0.09 6.41 16
7 O -0.54 -9.23 15.67 5.56 0.09 -9.14 16
8 N -0.72 -8.69 5.33 -57.64 -0.31 -9.00 16
9 C 0.14 2.14 3.48 -71.81 -0.25 1.89 16
10 H 0.11 1.81 7.48 -51.93 -0.39 1.43 16
11 C -0.17 -2.75 2.88 -95.23 -0.27 -3.03 16
12 H 0.10 1.68 6.02 -51.93 -0.31 1.37 16
13 C -0.09 -1.44 6.12 -27.07 -0.17 -1.60 16
14 C -0.13 -2.28 5.90 -26.42 -0.16 -2.44 16
15 C 0.14 2.96 4.50 -3.25 -0.01 2.95 16
16 N -0.58 -12.92 2.34 -169.24 -0.40 -13.31 16
17 C -0.27 -6.86 9.28 -15.06 -0.14 -7.00 16
18 H 0.09 2.27 5.46 -52.49 -0.29 1.99 16
19 C 0.05 1.25 5.05 -17.43 -0.09 1.17 16
20 N -0.89 -26.05 13.97 55.49 0.78 -25.27 16
21 Si 0.84 21.13 27.30 -169.99 -4.64 16.49 16
22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16
23 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16
24 H -0.26 -6.11 4.81 56.52 0.27 -5.84 16
25 C 0.15 2.75 3.01 -71.98 -0.22 2.54 16
26 H 0.05 0.97 8.00 -51.93 -0.42 0.56 16
27 C -0.06 -1.00 1.38 -158.40 -0.22 -1.22 16
28 C -0.13 -1.99 9.22 37.16 0.34 -1.65 16
29 C -0.12 -1.83 6.91 37.16 0.26 -1.57 16
30 C 0.06 0.73 11.96 -17.36 -0.21 0.52 16
31 N -0.30 -3.84 12.58 30.63 0.39 -3.46 16
32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16
35 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16
36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
37 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16
38 H 0.40 3.94 6.76 -40.82 -0.28 3.66 16
39 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16
40 H 0.05 0.90 8.06 -51.93 -0.42 0.48 16
41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
43 H 0.06 1.43 7.12 -51.93 -0.37 1.06 16
44 H 0.02 0.53 6.47 -51.93 -0.34 0.19 16
45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
46 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
48 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16
49 H 0.07 1.30 5.67 -51.93 -0.29 1.01 16
50 H 0.07 1.20 7.23 -51.93 -0.38 0.82 16
51 H 0.04 0.45 6.59 -51.93 -0.34 0.11 16
52 H 0.18 1.62 8.06 -52.48 -0.42 1.20 16
LS Contribution 400.20 15.07 6.03 6.03
Total: -1.00 -34.01 400.20 -8.30 -42.32
By element:
Atomic # 1 Polarization: 12.97 SS G_CDS: -8.57 Total: 4.40 kcal
Atomic # 6 Polarization: -3.40 SS G_CDS: -1.39 Total: -4.79 kcal
Atomic # 7 Polarization: -55.48 SS G_CDS: 0.18 Total: -55.30 kcal
Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal
Atomic # 14 Polarization: 21.13 SS G_CDS: -4.64 Total: 16.49 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -34.01 -8.30 -42.32 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087276720.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 153.599 kcal
(2) G-P(sol) polarization free energy of solvation -34.015 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.585 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal
(6) G-S(sol) free energy of system = (1) + (5) 111.282 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds