Wall clock time and date at job start Wed Apr 1 2020 04:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34946 * 126.03753 * 2 1 4 4 C 1.35317 * 107.74663 * 180.02562 * 3 2 1 5 5 C 1.50692 * 126.04013 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47438 * 90.00022 * 5 4 3 7 7 O 1.21280 * 119.99457 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99933 * 180.27708 * 6 5 4 9 9 C 1.46500 * 119.99590 * 179.72431 * 8 6 5 10 10 H 1.08995 * 113.22552 * 25.33085 * 9 8 6 11 11 C 1.50005 * 114.12343 * 252.51810 * 9 8 6 12 12 H 1.08995 * 112.50521 * 321.29778 * 11 9 8 13 13 C 1.51206 * 126.17000 * 104.78758 * 11 9 8 14 14 C 1.54089 * 106.19096 * 161.43112 * 13 11 9 15 15 C 1.52499 * 112.67208 * 304.56249 * 14 13 11 16 16 N 1.48404 * 111.87124 * 46.79139 * 15 14 13 17 17 C 1.36935 * 123.16871 * 128.11875 * 16 15 14 18 18 H 1.07996 * 120.00095 * 221.18081 * 17 16 15 19 19 C 1.38810 * 119.99516 * 41.18571 * 17 16 15 20 20 N 1.31629 * 119.99887 * 210.53102 * 19 17 16 21 21 Si 1.86796 * 120.00409 * 30.53035 * 19 17 16 22 22 H 1.48510 * 109.47109 * 84.69625 * 21 19 17 23 23 H 1.48499 * 109.47163 * 204.69299 * 21 19 17 24 24 H 1.48496 * 109.47318 * 324.69335 * 21 19 17 25 25 C 1.45375 * 113.66453 * 308.16064 * 16 15 14 26 26 H 1.09001 * 112.09564 * 300.22903 * 25 16 15 27 27 C 1.50269 * 126.81079 * 156.13791 * 25 16 15 28 28 C 1.52996 * 114.19777 * 106.83523 * 27 25 16 29 29 C 1.52998 * 114.04783 * 334.33089 * 27 25 16 30 30 C 1.39864 * 107.91717 * 0.26122 * 4 3 2 31 31 N 1.30845 * 108.20596 * 359.55492 * 30 4 3 32 32 H 1.09001 * 109.46721 * 89.99765 * 1 2 3 33 33 H 1.08996 * 109.47246 * 210.00283 * 1 2 3 34 34 H 1.09000 * 109.46981 * 330.00245 * 1 2 3 35 35 H 1.08003 * 126.12923 * 359.97438 * 3 2 1 36 36 H 1.08998 * 109.47323 * 329.99400 * 5 4 3 37 37 H 1.09005 * 109.46811 * 209.99914 * 5 4 3 38 38 H 0.96998 * 120.00258 * 359.71492 * 8 6 5 39 39 H 1.08997 * 110.10312 * 280.60404 * 13 11 9 40 40 H 1.09005 * 110.10019 * 42.15429 * 13 11 9 41 41 H 1.08995 * 108.84226 * 65.39087 * 14 13 11 42 42 H 1.09003 * 108.84115 * 183.74455 * 14 13 11 43 43 H 1.09004 * 108.99724 * 167.40749 * 15 14 13 44 44 H 1.08996 * 109.00086 * 286.25199 * 15 14 13 45 45 H 0.96998 * 120.00315 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.47129 * 173.86074 * 28 27 25 47 47 H 1.09000 * 109.47050 * 293.85500 * 28 27 25 48 48 H 1.08995 * 109.47695 * 53.86270 * 28 27 25 49 49 H 1.09002 * 109.47020 * 332.06623 * 29 27 25 50 50 H 1.08993 * 109.47016 * 92.06803 * 29 27 25 51 51 H 1.09001 * 109.46861 * 212.07232 * 29 27 25 52 52 H 1.08005 * 125.89873 * 179.73468 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 -0.0006 5 6 4.7680 1.5452 -0.0002 6 6 5.1765 1.8372 1.4207 7 8 4.5361 1.3774 2.3423 8 7 6.2497 2.6143 1.6672 9 6 6.6432 2.9030 3.0485 10 1 6.3177 2.1408 3.7564 11 6 6.3569 4.3089 3.4864 12 1 6.5488 5.0382 2.6995 13 6 5.2366 4.7477 4.4022 14 6 5.6283 6.1445 4.9215 15 6 6.9971 6.1591 5.5938 16 7 8.0182 5.4490 4.7843 17 6 9.2225 6.0042 4.4430 18 1 9.6210 5.8610 3.4495 19 6 9.9311 6.7510 5.3741 20 7 10.7033 7.7394 4.9747 21 14 9.7890 6.3536 7.1937 22 1 10.7429 5.2691 7.5395 23 1 10.1067 7.5652 7.9913 24 1 8.4045 5.9103 7.4969 25 6 7.6192 4.1087 4.3870 26 1 7.4180 3.4691 5.2464 27 6 8.1333 3.3278 3.2105 28 6 9.0730 2.1792 3.5825 29 6 8.6624 4.1973 2.0682 30 6 3.5347 -0.7321 -0.0070 31 7 2.2891 -1.1328 -0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 1.9282 2.1194 -0.0004 36 1 4.5442 2.4804 -0.5135 37 1 5.5820 1.0343 -0.5146 38 1 6.7617 2.9822 0.9300 39 1 4.2997 4.8032 3.8479 40 1 5.1383 4.0507 5.2345 41 1 5.6403 6.8411 4.0834 42 1 4.8793 6.4754 5.6410 43 1 7.3121 7.1930 5.7349 44 1 6.9192 5.6761 6.5678 45 1 11.1988 8.2611 5.6253 46 1 9.3113 1.6011 2.6897 47 1 9.9908 2.5842 4.0087 48 1 8.5865 1.5340 4.3139 49 1 8.1490 5.1588 2.0757 50 1 9.7329 4.3560 2.1983 51 1 8.4822 3.6966 1.1170 52 1 4.4054 -1.3710 -0.0131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087276720.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:36 Heat of formation + Delta-G solvation = 89.408817 kcal Electronic energy + Delta-G solvation = -31628.410638 eV Core-core repulsion = 27631.159578 eV Total energy + Delta-G solvation = -3997.251061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.39729 -42.04432 -39.87291 -37.00305 -34.80638 -34.49327 -34.28587 -32.78935 -32.43470 -30.86808 -29.24558 -28.53929 -27.45627 -26.94745 -25.80583 -23.75867 -22.64199 -21.98218 -21.44721 -21.08337 -20.80664 -19.69672 -18.57868 -17.85947 -17.63242 -16.96431 -16.81548 -16.19709 -16.04894 -15.68400 -15.46518 -15.26628 -15.14782 -14.96455 -14.89556 -14.45045 -14.26485 -14.09589 -14.01307 -13.85365 -13.62331 -13.36592 -13.33274 -13.16011 -13.03146 -12.71454 -12.69209 -12.65802 -12.59320 -12.41122 -11.98994 -11.93164 -11.68960 -11.51651 -11.46532 -11.41549 -11.13822 -10.72024 -10.62653 -10.30100 -10.18479 -9.73060 -9.24924 -8.40753 -8.17205 -5.47088 1.02045 1.36744 1.45146 1.52179 1.73649 1.83047 1.88585 2.50368 2.55840 3.04313 3.27457 3.47148 3.70141 3.73447 3.88940 4.02591 4.04964 4.14817 4.18662 4.34874 4.36002 4.41005 4.45806 4.48269 4.54772 4.57150 4.64510 4.68585 4.69635 4.79296 4.87496 4.91078 4.95387 4.96222 5.02540 5.09993 5.13580 5.16736 5.22796 5.25505 5.29674 5.31304 5.36541 5.52179 5.58219 5.67451 5.76113 5.83465 5.98944 6.20433 6.39586 6.79039 6.82713 7.02927 7.51930 7.70118 8.33675 9.02401 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021888 B = 0.002542 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.922915 B =11013.202081 C =11577.142620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.384 5.384 3 C 0.064 3.936 4 C -0.235 4.235 5 C -0.051 4.051 6 C 0.511 3.489 7 O -0.583 6.583 8 N -0.706 5.706 9 C 0.164 3.836 10 H 0.098 0.902 11 C -0.150 4.150 12 H 0.091 0.909 13 C -0.084 4.084 14 C -0.121 4.121 15 C 0.138 3.862 16 N -0.591 5.591 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.007 4.007 20 N -0.935 5.935 21 Si 0.891 3.109 22 H -0.299 1.299 23 H -0.308 1.308 24 H -0.240 1.240 25 C 0.122 3.878 26 H 0.043 0.957 27 C -0.060 4.060 28 C -0.130 4.130 29 C -0.110 4.110 30 C 0.048 3.952 31 N -0.342 5.342 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.198 0.802 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.412 0.588 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.021 0.979 45 H 0.259 0.741 46 H 0.073 0.927 47 H 0.042 0.958 48 H 0.053 0.947 49 H 0.052 0.948 50 H 0.045 0.955 51 H 0.079 0.921 52 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.321 -12.546 -13.756 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.167 5.167 3 C -0.083 4.083 4 C -0.247 4.247 5 C -0.092 4.092 6 C 0.300 3.700 7 O -0.463 6.463 8 N -0.358 5.358 9 C 0.058 3.942 10 H 0.116 0.884 11 C -0.171 4.171 12 H 0.109 0.891 13 C -0.122 4.122 14 C -0.160 4.160 15 C 0.013 3.987 16 N -0.314 5.314 17 C -0.368 4.368 18 H 0.087 0.913 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.720 3.280 22 H -0.227 1.227 23 H -0.235 1.235 24 H -0.164 1.164 25 C 0.014 3.986 26 H 0.061 0.939 27 C -0.062 4.062 28 C -0.188 4.188 29 C -0.167 4.167 30 C -0.137 4.137 31 N -0.164 5.164 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.215 0.785 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.250 0.750 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.038 0.962 45 H 0.068 0.932 46 H 0.092 0.908 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.097 0.903 52 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -18.615 -13.725 -13.063 26.562 hybrid contribution 1.420 1.132 1.421 2.306 sum -17.195 -12.593 -11.642 24.285 Atomic orbital electron populations 1.22140 0.72389 1.05511 1.04586 1.48735 1.07827 1.03507 1.56586 1.22789 0.90878 0.94326 1.00279 1.19713 0.94519 0.93535 1.16884 1.19956 0.95993 1.01294 0.91953 1.21363 0.79348 0.76763 0.92569 1.90684 1.54342 1.53113 1.48153 1.45933 1.30307 1.51295 1.08225 1.21849 0.93326 0.94872 0.84200 0.88448 1.23286 0.97736 0.96977 0.99096 0.89116 1.21044 0.97475 0.95781 0.97859 1.21828 0.96347 0.97357 1.00497 1.21396 0.88907 0.95368 0.93006 1.44158 1.13864 1.10074 1.63304 1.18816 0.95477 1.26755 0.95750 0.91283 1.26133 0.96678 0.97324 1.00337 1.70085 1.33700 1.18710 1.35355 0.86635 0.79899 0.76536 0.84932 1.22668 1.23534 1.16447 1.21853 0.95800 0.87203 0.93708 0.93900 1.21901 0.93405 0.95233 0.95619 1.21666 0.98620 0.96879 1.01585 1.21508 1.00572 0.98467 0.96192 1.24083 0.95356 0.95431 0.98850 1.77245 1.02601 1.09993 1.26536 0.89177 0.89640 0.87345 0.78494 0.85688 0.85656 0.74956 0.91985 0.92957 0.92761 0.90774 0.94091 0.96153 0.93246 0.90772 0.93869 0.92749 0.92858 0.93616 0.90264 0.79020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 11.47 127.77 1.47 2.42 16 2 N -0.38 -7.42 4.01 -369.55 -1.48 -8.90 16 3 C 0.06 1.12 11.40 83.54 0.95 2.08 16 4 C -0.23 -4.46 4.59 -20.15 -0.09 -4.55 16 5 C -0.05 -0.71 6.18 29.10 0.18 -0.53 16 6 C 0.51 11.33 7.82 87.66 0.69 12.02 16 7 O -0.58 -18.72 15.67 -3.03 -0.05 -18.77 16 8 N -0.71 -14.60 5.33 -454.67 -2.42 -17.03 16 9 C 0.16 4.48 3.48 42.48 0.15 4.62 16 10 H 0.10 3.03 7.48 -2.39 -0.02 3.01 16 11 C -0.15 -4.64 2.88 -13.78 -0.04 -4.68 16 12 H 0.09 2.97 6.02 -2.39 -0.01 2.96 16 13 C -0.08 -2.56 6.12 30.38 0.19 -2.37 16 14 C -0.12 -3.99 5.90 30.80 0.18 -3.81 16 15 C 0.14 5.70 4.50 85.85 0.39 6.09 16 16 N -0.59 -26.23 2.34 -689.36 -1.61 -27.84 16 17 C -0.24 -12.53 9.28 84.03 0.78 -11.75 16 18 H 0.07 3.82 5.46 -2.91 -0.02 3.80 16 19 C -0.01 -0.40 5.05 84.86 0.43 0.03 16 20 N -0.93 -56.57 13.97 21.65 0.30 -56.26 16 21 Si 0.89 44.62 27.30 68.60 1.87 46.50 16 22 H -0.30 -15.27 7.11 99.48 0.71 -14.57 16 23 H -0.31 -15.73 7.11 99.48 0.71 -15.03 16 24 H -0.24 -11.22 4.81 99.48 0.48 -10.74 16 25 C 0.12 4.48 3.01 42.97 0.13 4.61 16 26 H 0.04 1.67 8.00 -2.39 -0.02 1.65 16 27 C -0.06 -1.81 1.38 -54.70 -0.08 -1.89 16 28 C -0.13 -3.70 9.22 71.98 0.66 -3.03 16 29 C -0.11 -3.24 6.91 71.98 0.50 -2.75 16 30 C 0.05 1.04 11.96 85.23 1.02 2.06 16 31 N -0.34 -8.41 12.58 -57.02 -0.72 -9.13 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.20 2.12 8.06 -2.91 -0.02 2.09 16 36 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.41 6.31 6.76 -92.71 -0.63 5.68 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.05 1.63 8.06 -2.38 -0.02 1.61 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.04 1.86 7.12 -2.38 -0.02 1.84 16 44 H 0.02 0.86 6.47 -2.39 -0.02 0.85 16 45 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 46 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.05 1.48 8.12 -2.39 -0.02 1.46 16 49 H 0.05 1.80 5.67 -2.39 -0.01 1.79 16 50 H 0.04 1.56 7.23 -2.39 -0.02 1.54 16 51 H 0.08 1.63 6.59 -2.39 -0.02 1.61 16 52 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -76.40 400.20 3.46 -72.94 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.07 Total: 19.92 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 7.50 Total: -1.42 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -5.93 Total: -119.16 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.05 Total: -18.77 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.87 Total: 46.50 kcal Total: -76.40 3.46 -72.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087276720.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.346 kcal (2) G-P(sol) polarization free energy of solvation -76.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds