Wall clock time and date at job start Wed Apr 1 2020 04:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34948 * 126.03806 * 2 1 4 4 C 1.35315 * 107.74719 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.04394 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.47046 * 89.99387 * 5 4 3 7 7 O 1.21282 * 119.99994 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99664 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00084 * 180.02562 * 8 6 5 10 10 H 1.09006 * 112.86530 * 26.75990 * 9 8 6 11 11 C 1.54153 * 113.64138 * 255.49717 * 9 8 6 12 12 H 1.09009 * 114.73401 * 26.75076 * 11 9 8 13 13 C 1.53056 * 111.69136 * 157.46128 * 11 9 8 14 14 C 1.53020 * 109.41019 * 146.40264 * 13 11 9 15 15 C 1.51633 * 109.37924 * 295.89307 * 14 13 11 16 16 N 1.45896 * 110.61511 * 56.20284 * 15 14 13 17 17 C 1.36933 * 118.48592 * 142.45865 * 16 15 14 18 18 H 1.08002 * 119.99651 * 206.28929 * 17 16 15 19 19 C 1.38810 * 120.00570 * 26.00958 * 17 16 15 20 20 N 1.31619 * 119.99407 * 16.79464 * 19 17 16 21 21 Si 1.86793 * 120.00387 * 196.80008 * 19 17 16 22 22 H 1.48502 * 109.47463 * 59.99696 * 21 19 17 23 23 H 1.48497 * 109.47073 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46828 * 299.99781 * 21 19 17 25 25 C 1.45098 * 123.02617 * 322.17211 * 16 15 14 26 26 H 1.08995 * 112.25192 * 156.05948 * 25 16 15 27 27 C 1.51993 * 114.59470 * 158.14214 * 9 8 6 28 28 C 1.53000 * 113.08196 * 332.86641 * 27 9 8 29 29 C 1.52998 * 113.73999 * 202.25794 * 27 9 8 30 30 C 1.39876 * 107.92074 * 0.26053 * 4 3 2 31 31 N 1.30844 * 108.20147 * 359.56184 * 30 4 3 32 32 H 1.09000 * 109.47109 * 89.99741 * 1 2 3 33 33 H 1.09005 * 109.47149 * 209.99594 * 1 2 3 34 34 H 1.08996 * 109.47148 * 329.99330 * 1 2 3 35 35 H 1.07994 * 126.12528 * 0.02562 * 3 2 1 36 36 H 1.08997 * 109.46587 * 329.99841 * 5 4 3 37 37 H 1.08996 * 109.47269 * 209.99939 * 5 4 3 38 38 H 0.96999 * 120.00010 * 0.02562 * 8 6 5 39 39 H 1.09005 * 109.47967 * 266.38350 * 13 11 9 40 40 H 1.09001 * 109.48130 * 26.41913 * 13 11 9 41 41 H 1.09005 * 109.56199 * 55.19233 * 14 13 11 42 42 H 1.08998 * 109.56156 * 175.40737 * 14 13 11 43 43 H 1.09001 * 107.59814 * 296.75282 * 15 14 13 44 44 H 1.09003 * 110.46754 * 177.47361 * 15 14 13 45 45 H 0.97006 * 119.99676 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.47124 * 157.52212 * 28 27 9 47 47 H 1.08999 * 109.47192 * 277.52372 * 28 27 9 48 48 H 1.09003 * 109.47023 * 37.52368 * 28 27 9 49 49 H 1.09001 * 109.47228 * 287.64948 * 29 27 9 50 50 H 1.08997 * 109.47313 * 47.65699 * 29 27 9 51 51 H 1.09006 * 109.47307 * 167.65103 * 29 27 9 52 52 H 1.07993 * 125.90302 * 179.73567 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7681 1.5452 0.0013 6 6 5.1754 1.8380 1.4225 7 8 4.5348 1.3780 2.3439 8 7 6.2514 2.6109 1.6693 9 6 6.6478 2.8952 3.0508 10 1 6.3395 2.1165 3.7486 11 6 6.2882 4.3200 3.5164 12 1 5.4349 4.7653 3.0046 13 6 6.1945 4.4100 5.0414 14 6 6.6671 5.7915 5.4992 15 6 8.1343 5.9607 5.1559 16 7 8.3552 5.7532 3.7288 17 6 9.2756 6.5399 3.0892 18 1 9.1808 6.7296 2.0302 19 6 10.3270 7.0984 3.8029 20 7 10.6395 6.6267 4.9912 21 14 11.2981 8.5194 3.0771 22 1 10.3868 9.6647 2.8258 23 1 12.3593 8.9318 4.0304 24 1 11.9199 8.0917 1.7981 25 6 7.6489 4.7477 2.9572 26 1 7.6121 4.9924 1.8957 27 6 8.1014 3.3058 3.2201 28 6 9.0152 2.7402 2.1311 29 6 8.6447 3.0799 4.6324 30 6 3.5347 -0.7322 -0.0051 31 7 2.2891 -1.1329 0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3634 -0.8901 0.5138 34 1 -0.3633 0.8899 0.5139 35 1 1.9282 2.1193 0.0004 36 1 4.5445 2.4801 -0.5125 37 1 5.5824 1.0341 -0.5121 38 1 6.7635 2.9791 0.9324 39 1 5.1606 4.2582 5.3517 40 1 6.8253 3.6428 5.4903 41 1 6.0931 6.5625 4.9852 42 1 6.5251 5.8876 6.5757 43 1 8.6932 5.2147 5.7210 44 1 8.4786 6.9567 5.4344 45 1 11.3745 7.0167 5.4899 46 1 9.9132 3.3535 2.0556 47 1 9.2940 1.7176 2.3857 48 1 8.4896 2.7465 1.1762 49 1 8.2125 3.8162 5.3100 50 1 8.3793 2.0774 4.9678 51 1 9.7297 3.1853 4.6255 52 1 4.4053 -1.3711 -0.0102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087276721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:40 Heat of formation + Delta-G solvation = 88.908873 kcal Electronic energy + Delta-G solvation = -31745.698862 eV Core-core repulsion = 27748.426122 eV Total energy + Delta-G solvation = -3997.272740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.44191 -42.05468 -39.92043 -36.96176 -34.80016 -34.48288 -33.90963 -32.62382 -32.17950 -31.29571 -29.24448 -28.25022 -27.19915 -26.91170 -25.69441 -24.03547 -22.80482 -21.99263 -21.84663 -20.87770 -20.68385 -19.06549 -18.67179 -17.87631 -17.69714 -17.03980 -16.53305 -16.22022 -16.16356 -15.97267 -15.48867 -15.38854 -15.25054 -14.80197 -14.60789 -14.26415 -14.12240 -13.94974 -13.87804 -13.67353 -13.49978 -13.37059 -13.17816 -13.12494 -12.91339 -12.80870 -12.71907 -12.64698 -12.49227 -12.35448 -12.09730 -11.93643 -11.53934 -11.49805 -11.35414 -11.08077 -10.91206 -10.76999 -10.59627 -10.30865 -10.26775 -9.72815 -9.26510 -8.50538 -7.75698 -5.20426 1.00850 1.49481 1.52123 1.57374 1.72059 1.81137 1.84145 2.48841 2.57148 3.35881 3.66881 3.69057 3.76358 3.80088 4.00962 4.03930 4.07064 4.09718 4.31098 4.34248 4.37690 4.45609 4.47065 4.54114 4.55765 4.66679 4.69571 4.75247 4.81991 4.84775 4.87996 4.94184 4.97709 5.00563 5.05330 5.14549 5.16754 5.19478 5.23880 5.34261 5.39199 5.46994 5.57989 5.60062 5.67821 5.74681 5.75460 5.85314 6.00593 6.19594 6.47920 6.76695 6.78184 7.28356 7.47229 8.06326 8.43151 9.26912 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020660 B = 0.002447 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.934449 B =11439.689124 C =11695.656132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.384 5.384 3 C 0.065 3.935 4 C -0.236 4.236 5 C -0.050 4.050 6 C 0.513 3.487 7 O -0.582 6.582 8 N -0.700 5.700 9 C 0.147 3.853 10 H 0.079 0.921 11 C -0.123 4.123 12 H 0.072 0.928 13 C -0.107 4.107 14 C -0.132 4.132 15 C 0.187 3.813 16 N -0.580 5.580 17 C -0.263 4.263 18 H 0.066 0.934 19 C -0.044 4.044 20 N -0.928 5.928 21 Si 0.956 3.044 22 H -0.283 1.283 23 H -0.300 1.300 24 H -0.277 1.277 25 C 0.175 3.825 26 H 0.076 0.924 27 C -0.111 4.111 28 C -0.122 4.122 29 C -0.131 4.131 30 C 0.048 3.952 31 N -0.341 5.341 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.199 0.801 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.412 0.588 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.014 0.986 44 H 0.032 0.968 45 H 0.246 0.754 46 H 0.035 0.965 47 H 0.050 0.950 48 H 0.072 0.928 49 H 0.087 0.913 50 H 0.050 0.950 51 H 0.029 0.971 52 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.222 -9.902 -11.388 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.166 5.166 3 C -0.082 4.082 4 C -0.248 4.248 5 C -0.091 4.091 6 C 0.301 3.699 7 O -0.461 6.461 8 N -0.352 5.352 9 C 0.040 3.960 10 H 0.097 0.903 11 C -0.144 4.144 12 H 0.090 0.910 13 C -0.144 4.144 14 C -0.171 4.171 15 C 0.062 3.938 16 N -0.299 5.299 17 C -0.393 4.393 18 H 0.083 0.917 19 C -0.239 4.239 20 N -0.574 5.574 21 Si 0.785 3.215 22 H -0.209 1.209 23 H -0.226 1.226 24 H -0.203 1.203 25 C 0.066 3.934 26 H 0.094 0.906 27 C -0.115 4.115 28 C -0.179 4.179 29 C -0.188 4.188 30 C -0.137 4.137 31 N -0.163 5.163 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.216 0.784 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.250 0.750 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.032 0.968 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.091 0.909 49 H 0.105 0.895 50 H 0.069 0.931 51 H 0.048 0.952 52 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -17.541 -11.184 -10.632 23.362 hybrid contribution 1.834 1.690 -0.093 2.495 sum -15.707 -9.494 -10.725 21.257 Atomic orbital electron populations 1.22147 0.72327 1.05546 1.04615 1.48742 1.07849 1.03480 1.56531 1.22789 0.90825 0.94368 1.00177 1.19702 0.94494 0.93539 1.17034 1.19948 0.96085 1.01422 0.91633 1.21393 0.79090 0.76674 0.92703 1.90682 1.54311 1.52948 1.48185 1.45721 1.30152 1.51640 1.07688 1.21426 0.95035 0.95462 0.84033 0.90294 1.23189 0.98144 0.96479 0.96611 0.90958 1.21580 1.01049 0.97707 0.94100 1.21684 0.97925 0.97165 1.00337 1.20101 0.91414 0.98405 0.83871 1.43366 1.43454 1.37473 1.05580 1.19452 1.02848 1.22915 0.94106 0.91670 1.25602 0.98059 1.02390 0.97882 1.70217 1.30282 1.42168 1.14683 0.85525 0.77999 0.80555 0.77417 1.20931 1.22645 1.20294 1.21510 0.90780 0.86585 0.94547 0.90638 1.22494 0.93190 0.99493 0.96319 1.21560 0.98830 0.99571 0.97969 1.21988 0.99802 1.00841 0.96185 1.24078 0.95377 0.95409 0.98850 1.77248 1.02552 1.09975 1.26515 0.89151 0.89599 0.87310 0.78408 0.85520 0.85649 0.74983 0.91727 0.90312 0.93251 0.91160 0.96846 0.94916 0.94524 0.94556 0.93067 0.90890 0.89524 0.93101 0.95203 0.79073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 11.47 127.77 1.47 2.45 16 2 N -0.38 -7.60 4.01 -369.57 -1.48 -9.08 16 3 C 0.07 1.19 11.40 83.54 0.95 2.14 16 4 C -0.24 -4.70 4.59 -20.14 -0.09 -4.79 16 5 C -0.05 -0.76 6.19 29.10 0.18 -0.58 16 6 C 0.51 12.24 7.82 87.66 0.69 12.92 16 7 O -0.58 -19.57 15.67 -3.04 -0.05 -19.62 16 8 N -0.70 -16.19 4.72 -442.28 -2.09 -18.28 16 9 C 0.15 4.40 3.24 45.04 0.15 4.54 16 10 H 0.08 2.64 7.38 -2.38 -0.02 2.62 16 11 C -0.12 -4.02 4.12 -10.37 -0.04 -4.07 16 12 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 13 C -0.11 -3.54 5.17 30.62 0.16 -3.38 16 14 C -0.13 -4.89 5.96 30.15 0.18 -4.71 16 15 C 0.19 8.68 4.01 86.04 0.34 9.03 16 16 N -0.58 -26.96 2.69 -684.31 -1.84 -28.80 16 17 C -0.26 -13.63 9.47 84.03 0.80 -12.83 16 18 H 0.07 3.29 7.85 -2.91 -0.02 3.27 16 19 C -0.04 -2.34 4.84 84.86 0.41 -1.93 16 20 N -0.93 -52.89 11.06 21.65 0.24 -52.65 16 21 Si 0.96 43.86 29.58 68.60 2.03 45.89 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 C 0.17 6.52 3.45 45.45 0.16 6.68 16 26 H 0.08 2.72 7.92 -2.39 -0.02 2.70 16 27 C -0.11 -3.74 1.30 -52.43 -0.07 -3.81 16 28 C -0.12 -3.69 8.95 71.98 0.64 -3.05 16 29 C -0.13 -4.95 7.24 71.98 0.52 -4.43 16 30 C 0.05 1.09 11.96 85.24 1.02 2.10 16 31 N -0.34 -8.59 12.58 -57.02 -0.72 -9.31 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.41 7.52 6.81 -92.71 -0.63 6.89 16 39 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.08 2.67 4.55 -2.39 -0.01 2.66 16 41 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.01 0.69 5.61 -2.39 -0.01 0.68 16 44 H 0.03 1.74 6.53 -2.39 -0.02 1.72 16 45 H 0.25 13.83 8.31 -92.70 -0.77 13.06 16 46 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 47 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.07 1.71 5.86 -2.39 -0.01 1.70 16 49 H 0.09 3.47 1.86 -2.39 0.00 3.46 16 50 H 0.05 1.68 8.12 -2.39 -0.02 1.66 16 51 H 0.03 1.27 8.05 -2.38 -0.02 1.25 16 52 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -73.50 397.35 3.85 -69.65 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.30 Total: 25.90 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 7.46 Total: -3.70 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -5.89 Total: -118.12 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.05 Total: -19.62 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -73.50 3.85 -69.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087276721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.562 kcal (2) G-P(sol) polarization free energy of solvation -73.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds