Wall clock time and date at job start Wed Apr 1 2020 03:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35308 * 126.12805 * 2 1 4 4 C 1.39871 * 107.92224 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.89849 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47021 * 125.00416 * 5 4 3 7 7 O 1.21282 * 119.99742 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00069 * 179.97438 * 6 5 4 9 9 C 1.46493 * 119.99800 * 180.02562 * 8 6 5 10 10 H 1.09003 * 113.22763 * 25.33339 * 9 8 6 11 11 C 1.50006 * 114.12273 * 252.52367 * 9 8 6 12 12 H 1.08997 * 112.50687 * 321.29015 * 11 9 8 13 13 C 1.51209 * 126.17198 * 104.79052 * 11 9 8 14 14 C 1.54091 * 106.19098 * 161.42761 * 13 11 9 15 15 C 1.52494 * 112.67540 * 304.56139 * 14 13 11 16 16 N 1.48401 * 111.86977 * 46.78863 * 15 14 13 17 17 C 1.36938 * 123.16958 * 128.12464 * 16 15 14 18 18 H 1.08001 * 120.00367 * 207.53535 * 17 16 15 19 19 C 1.38814 * 119.99400 * 27.53642 * 17 16 15 20 20 N 1.31616 * 120.00377 * 11.07385 * 19 17 16 21 21 Si 1.86801 * 119.99718 * 191.07594 * 19 17 16 22 22 H 1.48503 * 109.47301 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47539 * 119.99766 * 21 19 17 24 24 H 1.48498 * 109.47119 * 239.99840 * 21 19 17 25 25 C 1.45385 * 113.66862 * 308.16170 * 16 15 14 26 26 H 1.08998 * 112.09174 * 300.23584 * 25 16 15 27 27 C 1.50263 * 126.81090 * 156.13412 * 25 16 15 28 28 C 1.53000 * 114.19601 * 106.83809 * 27 25 16 29 29 C 1.52999 * 114.04972 * 334.33811 * 27 25 16 30 30 N 1.30836 * 108.19669 * 0.26894 * 4 3 2 31 31 N 1.34948 * 126.12498 * 180.02562 * 2 1 3 32 32 H 0.97004 * 126.03392 * 359.97103 * 31 2 1 33 33 H 1.08998 * 109.46983 * 89.99772 * 1 2 3 34 34 H 1.08999 * 109.47374 * 209.99679 * 1 2 3 35 35 H 1.09003 * 109.46918 * 329.99992 * 1 2 3 36 36 H 1.08007 * 126.03807 * 0.02562 * 3 2 1 37 37 H 1.09001 * 109.47176 * 244.99810 * 5 4 3 38 38 H 1.08996 * 109.47570 * 5.00305 * 5 4 3 39 39 H 0.97003 * 119.99756 * 359.97438 * 8 6 5 40 40 H 1.09001 * 110.10149 * 280.60003 * 13 11 9 41 41 H 1.08999 * 110.09915 * 42.14488 * 13 11 9 42 42 H 1.09004 * 108.84244 * 65.38795 * 14 13 11 43 43 H 1.09002 * 108.84063 * 183.73450 * 14 13 11 44 44 H 1.08994 * 109.00342 * 167.40914 * 15 14 13 45 45 H 1.09001 * 109.00082 * 286.25671 * 15 14 13 46 46 H 0.97002 * 120.00059 * 179.97438 * 20 19 17 47 47 H 1.09005 * 109.46960 * 173.85809 * 28 27 25 48 48 H 1.08994 * 109.47160 * 293.85941 * 28 27 25 49 49 H 1.09004 * 109.47499 * 53.86390 * 28 27 25 50 50 H 1.09002 * 109.46941 * 332.84816 * 29 27 25 51 51 H 1.08994 * 109.46959 * 92.85670 * 29 27 25 52 52 H 1.09002 * 109.47105 * 212.85930 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0006 5 6 4.8542 1.5394 -0.0003 6 6 5.7393 1.1729 1.1631 7 8 5.4112 0.2816 1.9174 8 7 6.8959 1.8349 1.3648 9 6 7.7564 1.4781 2.4954 10 1 7.6246 0.4485 2.8279 11 6 7.7580 2.4859 3.6065 12 1 7.7353 3.5119 3.2393 13 6 7.0557 2.3469 4.9384 14 6 7.7196 3.3677 5.8827 15 6 9.2307 3.1856 5.9764 16 7 9.8525 3.0275 4.6383 17 6 10.9140 3.7802 4.2117 18 1 11.0544 3.9671 3.1573 19 6 11.8095 4.3028 5.1346 20 7 11.7716 3.9027 6.3879 21 14 13.0686 5.5740 4.5977 22 1 12.9045 5.8518 3.1481 23 1 12.8664 6.8272 5.3683 24 1 14.4362 5.0532 4.8496 25 6 9.2280 1.9989 3.8224 26 1 9.2744 1.0173 4.2940 27 6 9.2444 1.9058 2.3227 28 6 10.1513 0.8031 1.7727 29 6 9.4298 3.2504 1.6166 30 7 3.6333 -0.6525 -0.0068 31 7 2.3026 -1.0900 -0.0005 32 1 2.0054 -2.0134 -0.0005 33 1 -0.3633 0.0000 -1.0277 34 1 -0.3634 -0.8900 0.5138 35 1 -0.3633 0.8900 0.5139 36 1 1.9740 2.1211 0.0004 37 1 5.4030 1.4013 -0.9318 38 1 4.5485 2.5817 0.0901 39 1 7.1588 2.5470 0.7609 40 1 5.9952 2.5732 4.8280 41 1 7.1844 1.3364 5.3261 42 1 7.5080 4.3732 5.5191 43 1 7.2893 3.2579 6.8782 44 1 9.6633 4.0569 6.4681 45 1 9.4450 2.2989 6.5730 46 1 12.3976 4.2677 7.0327 47 1 10.0227 0.7320 0.6926 48 1 11.1905 1.0402 2.0001 49 1 9.8865 -0.1487 2.2335 50 1 9.0471 4.0498 2.2512 51 1 10.4895 3.4159 1.4227 52 1 8.8844 3.2434 0.6728 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087280250.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:27 Heat of formation + Delta-G solvation = 73.116128 kcal Electronic energy + Delta-G solvation = -31511.855916 eV Core-core repulsion = 27513.898352 eV Total energy + Delta-G solvation = -3997.957565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.40679 -42.10309 -39.95797 -36.93683 -34.75661 -34.46988 -34.16299 -32.44381 -32.01327 -30.85994 -29.62749 -28.57655 -27.78237 -27.44326 -26.02946 -23.92410 -22.72990 -21.65553 -21.34495 -20.92748 -20.59577 -19.67055 -18.52133 -18.25774 -17.74353 -17.13264 -16.49193 -16.20220 -15.81783 -15.61475 -15.55295 -15.18333 -14.92419 -14.68808 -14.60898 -14.44256 -14.25815 -14.11761 -13.99618 -13.78619 -13.48775 -13.40252 -13.11542 -13.03052 -12.91576 -12.76609 -12.74585 -12.69398 -12.46620 -12.34047 -12.01527 -11.87904 -11.66620 -11.62445 -11.50260 -11.44934 -11.07996 -10.78238 -10.57873 -10.27452 -10.18508 -9.78259 -9.46511 -8.49082 -7.75636 -5.23232 1.00429 1.48422 1.50163 1.59463 1.75378 1.79581 2.04179 2.41764 2.58141 3.30388 3.40970 3.47213 3.64244 3.74075 3.83015 3.89200 4.07590 4.19128 4.24383 4.25710 4.39161 4.48711 4.50173 4.58555 4.64121 4.66113 4.72397 4.78338 4.79080 4.83261 4.86328 4.91889 4.98216 5.05338 5.11726 5.13709 5.15115 5.20075 5.26229 5.31245 5.34053 5.37824 5.52634 5.55972 5.65629 5.74427 5.75607 5.79013 5.85199 6.45552 6.51251 6.73681 6.82385 7.18634 7.43545 7.90708 8.56232 9.30669 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022127 B = 0.002424 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.092914 B =11546.297627 C =12034.338312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.085 3.915 3 C -0.286 4.286 4 C 0.074 3.926 5 C -0.056 4.056 6 C 0.512 3.488 7 O -0.578 6.578 8 N -0.701 5.701 9 C 0.163 3.837 10 H 0.090 0.910 11 C -0.151 4.151 12 H 0.096 0.904 13 C -0.084 4.084 14 C -0.123 4.123 15 C 0.173 3.827 16 N -0.582 5.582 17 C -0.232 4.232 18 H 0.090 0.910 19 C -0.064 4.064 20 N -0.946 5.946 21 Si 0.961 3.039 22 H -0.258 1.258 23 H -0.297 1.297 24 H -0.300 1.300 25 C 0.128 3.872 26 H 0.024 0.976 27 C -0.057 4.057 28 C -0.129 4.129 29 C -0.116 4.116 30 N -0.316 5.316 31 N -0.479 5.479 32 H 0.444 0.556 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.168 0.832 37 H 0.134 0.866 38 H 0.147 0.853 39 H 0.415 0.585 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.060 0.940 45 H -0.016 1.016 46 H 0.244 0.756 47 H 0.076 0.924 48 H 0.047 0.953 49 H 0.046 0.954 50 H 0.057 0.943 51 H 0.055 0.945 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.269 -3.247 -17.785 27.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C -0.315 4.315 4 C -0.093 4.093 5 C -0.097 4.097 6 C 0.299 3.701 7 O -0.456 6.456 8 N -0.354 5.354 9 C 0.057 3.943 10 H 0.108 0.892 11 C -0.172 4.172 12 H 0.114 0.886 13 C -0.122 4.122 14 C -0.162 4.162 15 C 0.048 3.952 16 N -0.304 5.304 17 C -0.362 4.362 18 H 0.107 0.893 19 C -0.257 4.257 20 N -0.594 5.594 21 Si 0.791 3.209 22 H -0.182 1.182 23 H -0.224 1.224 24 H -0.228 1.228 25 C 0.019 3.981 26 H 0.042 0.958 27 C -0.059 4.059 28 C -0.187 4.187 29 C -0.173 4.173 30 N -0.139 5.139 31 N -0.189 5.189 32 H 0.289 0.711 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.186 0.814 37 H 0.152 0.848 38 H 0.164 0.836 39 H 0.253 0.747 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.002 0.998 46 H 0.053 0.947 47 H 0.095 0.905 48 H 0.066 0.934 49 H 0.065 0.935 50 H 0.076 0.924 51 H 0.074 0.926 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.635 -4.822 -17.159 27.267 hybrid contribution 0.801 0.764 0.738 1.331 sum -19.834 -4.058 -16.420 26.067 Atomic orbital electron populations 1.20586 0.84299 1.05091 1.04708 1.21768 0.96343 0.87083 0.99233 1.21466 0.90831 1.00641 1.18527 1.21975 0.96043 0.91494 0.99768 1.20194 0.90885 1.00618 0.98003 1.20994 0.81689 0.81043 0.86344 1.90721 1.73501 1.32499 1.48925 1.45824 1.20721 1.38572 1.30253 1.21837 0.88652 0.97674 0.86137 0.89212 1.23302 0.99132 0.99912 0.94880 0.88647 1.21042 0.98305 0.98000 0.94847 1.21916 0.96470 0.98825 0.98964 1.20666 0.89893 0.98459 0.86192 1.44032 1.34725 1.37383 1.14290 1.19769 1.00144 1.22968 0.93280 0.89261 1.25894 0.99935 1.03323 0.96586 1.70151 1.39534 1.46145 1.03570 0.85270 0.78609 0.78651 0.78418 1.18198 1.22407 1.22816 1.21676 0.93243 0.90672 0.92463 0.95802 1.21912 0.93092 0.97224 0.93647 1.21665 0.98794 0.96817 1.01404 1.21595 1.02096 0.93915 0.99715 1.77322 0.97627 1.13781 1.25207 1.46394 1.03621 1.09156 1.59718 0.71058 0.88460 0.90005 0.88457 0.81416 0.84845 0.83551 0.74677 0.92383 0.93897 0.92875 0.91915 0.92169 0.99792 0.94676 0.90518 0.93402 0.93475 0.92364 0.92608 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.43 71.24 0.74 0.14 16 2 C 0.08 1.38 7.21 41.40 0.30 1.68 16 3 C -0.29 -5.31 10.64 21.99 0.23 -5.08 16 4 C 0.07 1.74 6.01 43.10 0.26 2.00 16 5 C -0.06 -0.98 6.28 29.10 0.18 -0.80 16 6 C 0.51 13.51 7.82 87.66 0.69 14.19 16 7 O -0.58 -21.47 15.20 -3.03 -0.05 -21.51 16 8 N -0.70 -16.49 5.33 -454.68 -2.42 -18.92 16 9 C 0.16 5.03 3.48 42.47 0.15 5.18 16 10 H 0.09 3.23 7.48 -2.39 -0.02 3.22 16 11 C -0.15 -5.26 2.88 -13.78 -0.04 -5.30 16 12 H 0.10 3.34 6.03 -2.39 -0.01 3.33 16 13 C -0.08 -3.06 6.12 30.38 0.19 -2.88 16 14 C -0.12 -4.84 5.90 30.80 0.18 -4.66 16 15 C 0.17 8.59 5.31 85.85 0.46 9.04 16 16 N -0.58 -28.58 2.89 -689.36 -1.99 -30.57 16 17 C -0.23 -12.09 9.11 84.03 0.77 -11.33 16 18 H 0.09 4.34 5.20 -2.91 -0.02 4.33 16 19 C -0.06 -3.52 5.16 84.86 0.44 -3.08 16 20 N -0.95 -56.61 10.98 21.65 0.24 -56.37 16 21 Si 0.96 44.46 29.57 68.60 2.03 46.49 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 25 C 0.13 5.24 3.01 42.97 0.13 5.37 16 26 H 0.02 1.11 8.00 -2.39 -0.02 1.09 16 27 C -0.06 -1.83 1.38 -54.71 -0.08 -1.90 16 28 C -0.13 -3.87 9.22 71.98 0.66 -3.21 16 29 C -0.12 -3.29 6.94 71.98 0.50 -2.79 16 30 N -0.32 -8.78 12.06 -47.39 -0.57 -9.35 16 31 N -0.48 -9.64 7.36 -48.00 -0.35 -9.99 16 32 H 0.44 6.29 8.96 -213.33 -1.91 4.38 16 33 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.15 1.50 8.12 -2.39 -0.02 1.48 16 39 H 0.41 6.92 6.74 -92.71 -0.62 6.29 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.04 1.63 8.06 -2.39 -0.02 1.62 16 42 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.06 3.36 6.10 -2.39 -0.01 3.35 16 45 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 46 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 47 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 48 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.05 1.43 8.12 -2.38 -0.02 1.41 16 50 H 0.06 1.88 5.76 -2.39 -0.01 1.87 16 51 H 0.05 1.70 7.05 -2.39 -0.02 1.68 16 52 H 0.08 1.60 6.54 -2.39 -0.02 1.58 16 Total: -1.00 -78.86 401.54 1.05 -77.81 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -1.59 Total: 25.83 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.75 Total: -3.42 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -5.10 Total: -125.20 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.51 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -78.86 1.05 -77.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087280250.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.927 kcal (2) G-P(sol) polarization free energy of solvation -78.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds