Wall clock time and date at job start Wed Apr 1 2020 03:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35326 * 126.12459 * 2 1 4 4 C 1.39863 * 107.92176 * 180.14677 * 3 2 1 5 5 C 1.50701 * 125.90313 * 179.86347 * 4 3 2 6 6 C 1.50707 * 109.47046 * 124.71492 * 5 4 3 7 7 O 1.21282 * 119.99994 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99664 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00084 * 180.02562 * 8 6 5 10 10 H 1.09006 * 112.86530 * 26.75990 * 9 8 6 11 11 C 1.54153 * 113.64138 * 255.49717 * 9 8 6 12 12 H 1.09009 * 114.73401 * 26.75076 * 11 9 8 13 13 C 1.53056 * 111.69136 * 157.46128 * 11 9 8 14 14 C 1.53020 * 109.41019 * 146.40264 * 13 11 9 15 15 C 1.51633 * 109.37924 * 295.89307 * 14 13 11 16 16 N 1.45896 * 110.61511 * 56.20284 * 15 14 13 17 17 C 1.36933 * 118.48592 * 142.45865 * 16 15 14 18 18 H 1.08002 * 119.99651 * 206.28929 * 17 16 15 19 19 C 1.38810 * 120.00570 * 26.00958 * 17 16 15 20 20 N 1.31619 * 119.99407 * 16.79464 * 19 17 16 21 21 Si 1.86793 * 120.00387 * 196.80008 * 19 17 16 22 22 H 1.48502 * 109.47463 * 59.99696 * 21 19 17 23 23 H 1.48497 * 109.47073 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46828 * 299.99781 * 21 19 17 25 25 C 1.45098 * 123.02617 * 322.17211 * 16 15 14 26 26 H 1.08995 * 112.25192 * 156.05948 * 25 16 15 27 27 C 1.51993 * 114.59470 * 158.14214 * 9 8 6 28 28 C 1.53000 * 113.08196 * 332.86641 * 27 9 8 29 29 C 1.52998 * 113.73999 * 202.25794 * 27 9 8 30 30 N 1.30840 * 108.20164 * 359.60275 * 4 3 2 31 31 N 1.34945 * 126.13224 * 179.70948 * 2 1 3 32 32 H 0.97003 * 126.03456 * 359.97438 * 31 2 1 33 33 H 1.08995 * 109.46753 * 270.31179 * 1 2 3 34 34 H 1.08991 * 109.47484 * 30.31560 * 1 2 3 35 35 H 1.09001 * 109.46804 * 150.31397 * 1 2 3 36 36 H 1.07995 * 126.03760 * 0.03211 * 3 2 1 37 37 H 1.08997 * 109.46587 * 4.71946 * 5 4 3 38 38 H 1.08996 * 109.47269 * 244.72044 * 5 4 3 39 39 H 0.96999 * 120.00010 * 0.02562 * 8 6 5 40 40 H 1.09005 * 109.47967 * 266.38350 * 13 11 9 41 41 H 1.09001 * 109.48130 * 26.41913 * 13 11 9 42 42 H 1.09005 * 109.56199 * 55.19233 * 14 13 11 43 43 H 1.08998 * 109.56156 * 175.40737 * 14 13 11 44 44 H 1.09001 * 107.59814 * 296.75282 * 15 14 13 45 45 H 1.09003 * 110.46754 * 177.47361 * 15 14 13 46 46 H 0.97006 * 119.99676 * 179.97438 * 20 19 17 47 47 H 1.09005 * 109.47124 * 157.52212 * 28 27 9 48 48 H 1.08999 * 109.47192 * 277.52372 * 28 27 9 49 49 H 1.09003 * 109.47023 * 37.52368 * 28 27 9 50 50 H 1.09001 * 109.47228 * 287.64948 * 29 27 9 51 51 H 1.08997 * 109.47313 * 47.65699 * 29 27 9 52 52 H 1.09006 * 109.47307 * 167.65103 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0931 0.0000 4 6 3.6334 0.6562 -0.0034 5 6 4.8543 1.5397 -0.0075 6 6 5.7389 1.1796 1.1582 7 8 5.4106 0.2925 1.9173 8 7 6.8948 1.8434 1.3572 9 6 7.7551 1.4930 2.4900 10 1 7.6370 0.4567 2.8069 11 6 7.6915 2.5053 3.6508 12 1 6.7553 3.0591 3.7222 13 6 8.1246 1.8741 4.9762 14 6 8.8354 2.9250 5.8317 15 6 10.1100 3.3618 5.1360 16 7 9.8195 3.8554 3.7941 17 6 10.5320 4.9259 3.3236 18 1 10.1022 5.5728 2.5732 19 6 11.8045 5.1830 3.8151 20 7 12.4591 4.2465 4.4685 21 14 12.5876 6.8579 3.5496 22 1 11.7421 7.9049 4.1776 23 1 13.9379 6.8765 4.1672 24 1 12.7051 7.1241 2.0934 25 6 8.8147 3.2604 2.9330 26 1 8.4428 3.9623 2.1865 27 6 9.2093 1.9057 2.3314 28 6 9.6534 1.9882 0.8696 29 6 10.1760 1.1036 3.2048 30 7 3.6334 -0.6522 0.0032 31 7 2.3027 -1.0899 0.0055 32 1 2.0056 -2.0133 0.0106 33 1 -0.3633 0.0056 1.0276 34 1 -0.3634 0.8870 -0.5187 35 1 -0.3633 -0.8928 -0.5090 36 1 1.9740 2.1211 0.0005 37 1 4.5483 2.5824 0.0771 38 1 5.4033 1.3965 -0.9382 39 1 7.1572 2.5531 0.7503 40 1 7.2468 1.5060 5.5075 41 1 8.8045 1.0453 4.7791 42 1 8.1871 3.7922 5.9579 43 1 9.0725 2.5016 6.8076 44 1 10.7632 2.4918 5.0683 45 1 10.6084 4.1436 5.7092 46 1 13.3485 4.4260 4.8117 47 1 10.5206 2.6438 0.7898 48 1 9.9167 0.9924 0.5131 49 1 8.8393 2.3873 0.2645 50 1 10.0592 1.4036 4.2462 51 1 9.9578 0.0402 3.1063 52 1 11.2000 1.2954 2.8841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087280251.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:31 Heat of formation + Delta-G solvation = 96.988382 kcal Electronic energy + Delta-G solvation = -31682.768606 eV Core-core repulsion = 27685.846220 eV Total energy + Delta-G solvation = -3996.922386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.42503 -40.93218 -38.77800 -35.34096 -33.49215 -33.17738 -32.54500 -31.72928 -30.35808 -29.86388 -28.71827 -27.18223 -26.77453 -25.38117 -24.50880 -22.40123 -21.58495 -20.88213 -20.57346 -19.62495 -19.15261 -17.57718 -17.50433 -16.94344 -16.59739 -15.75805 -15.29860 -14.92991 -14.72384 -14.44718 -14.11170 -13.92347 -13.83184 -13.72510 -13.36174 -13.21248 -13.04134 -12.96470 -12.69833 -12.45953 -12.36921 -12.16761 -12.02561 -11.96823 -11.56234 -11.30406 -11.11100 -10.99226 -10.79421 -10.69955 -10.64518 -10.43181 -10.22259 -9.92911 -9.81145 -9.62298 -9.48096 -9.34868 -9.26713 -9.03282 -8.73172 -8.48895 -8.29464 -6.60572 -5.75123 -3.18308 1.74182 2.55910 2.71039 2.86214 3.38441 3.44930 3.45362 3.46034 4.35568 4.47540 4.51073 4.75263 4.99169 5.02854 5.10170 5.11265 5.18600 5.29063 5.35506 5.43014 5.44189 5.51556 5.54020 5.59036 5.65968 5.77858 5.89626 5.94432 6.01795 6.12997 6.19967 6.24888 6.31761 6.38841 6.46890 6.49910 6.53709 6.63821 6.64446 6.73246 6.81537 6.87220 6.89984 7.04962 7.14192 7.20272 7.27531 7.45854 7.59973 7.76965 7.78532 7.86212 8.48083 8.48534 9.27566 9.93724 10.37720 11.30585 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020919 B = 0.002416 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.186465 B =11588.783094 C =11862.874340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.079 3.921 3 C -0.265 4.265 4 C 0.091 3.909 5 C -0.062 4.062 6 C 0.515 3.485 7 O -0.527 6.527 8 N -0.707 5.707 9 C 0.127 3.873 10 H 0.091 0.909 11 C -0.129 4.129 12 H 0.067 0.933 13 C -0.110 4.110 14 C -0.143 4.143 15 C 0.177 3.823 16 N -0.568 5.568 17 C -0.261 4.261 18 H 0.064 0.936 19 C 0.007 3.993 20 N -0.900 5.900 21 Si 0.899 3.101 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.284 1.284 25 C 0.188 3.812 26 H 0.070 0.930 27 C -0.113 4.113 28 C -0.126 4.126 29 C -0.136 4.136 30 N -0.260 5.260 31 N -0.477 5.477 32 H 0.435 0.565 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.147 0.853 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.399 0.601 40 H 0.046 0.954 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.035 0.965 45 H 0.070 0.930 46 H 0.253 0.747 47 H 0.063 0.937 48 H 0.041 0.959 49 H 0.041 0.959 50 H 0.097 0.903 51 H 0.032 0.968 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.269 -6.830 -8.819 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.294 4.294 4 C -0.076 4.076 5 C -0.104 4.104 6 C 0.300 3.700 7 O -0.403 6.403 8 N -0.358 5.358 9 C 0.021 3.979 10 H 0.109 0.891 11 C -0.150 4.150 12 H 0.085 0.915 13 C -0.147 4.147 14 C -0.182 4.182 15 C 0.052 3.948 16 N -0.286 5.286 17 C -0.391 4.391 18 H 0.081 0.919 19 C -0.192 4.192 20 N -0.544 5.544 21 Si 0.729 3.271 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.210 1.210 25 C 0.077 3.923 26 H 0.088 0.912 27 C -0.117 4.117 28 C -0.184 4.184 29 C -0.192 4.192 30 N -0.082 5.082 31 N -0.185 5.185 32 H 0.279 0.721 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.164 0.836 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.235 0.765 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.082 0.918 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.115 0.885 51 H 0.051 0.949 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.603 -8.487 -8.161 22.016 hybrid contribution -0.059 1.458 -0.505 1.544 sum -18.662 -7.030 -8.666 21.744 Atomic orbital electron populations 1.20439 0.87369 1.03768 1.03425 1.21077 0.94523 0.87842 1.01487 1.21088 0.91399 0.99174 1.17773 1.21505 0.94464 0.91573 1.00096 1.20061 0.92031 0.99330 0.99002 1.20274 0.81505 0.82077 0.86169 1.90728 1.72336 1.30477 1.46745 1.45734 1.21229 1.38560 1.30301 1.21843 0.91052 0.98759 0.86207 0.89081 1.23240 0.99446 0.97621 0.94683 0.91463 1.21610 0.99627 0.99004 0.94496 1.21822 1.00316 0.98050 0.97975 1.20363 0.91169 0.98667 0.84557 1.43212 1.40029 1.34376 1.10944 1.19150 0.95593 1.02210 1.22130 0.91861 1.24967 0.95803 0.97544 1.00836 1.70065 1.12178 1.30916 1.41200 0.86435 0.78267 0.84627 0.77785 1.21172 1.21760 1.21015 1.21264 0.89045 0.90394 0.91579 0.91175 1.22644 0.92020 1.01020 0.96037 1.21605 1.00849 1.00669 0.95282 1.22068 0.98740 0.96168 1.02244 1.77432 0.95462 1.12481 1.22874 1.46335 1.04230 1.08138 1.59838 0.72104 0.90178 0.89584 0.91225 0.83553 0.86917 0.87277 0.76454 0.93562 0.90086 0.93068 0.92815 0.94769 0.91191 0.93689 0.91783 0.93989 0.93975 0.88483 0.94921 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.43 36.01 0.38 -0.08 16 2 C 0.08 0.73 7.21 -82.26 -0.59 0.14 16 3 C -0.27 -2.81 10.64 -40.01 -0.43 -3.23 16 4 C 0.09 1.17 6.02 -82.41 -0.50 0.67 16 5 C -0.06 -0.67 6.28 -29.03 -0.18 -0.85 16 6 C 0.52 7.55 7.82 -10.99 -0.09 7.47 16 7 O -0.53 -10.07 15.20 5.56 0.08 -9.98 16 8 N -0.71 -9.86 4.72 -53.72 -0.25 -10.11 16 9 C 0.13 2.12 3.24 -67.85 -0.22 1.90 16 10 H 0.09 1.68 7.38 -51.93 -0.38 1.30 16 11 C -0.13 -2.29 4.12 -89.96 -0.37 -2.66 16 12 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 13 C -0.11 -1.95 5.17 -26.69 -0.14 -2.09 16 14 C -0.14 -2.73 5.96 -27.41 -0.16 -2.89 16 15 C 0.18 4.07 4.01 -5.06 -0.02 4.04 16 16 N -0.57 -13.28 2.69 -167.65 -0.45 -13.73 16 17 C -0.26 -6.78 9.47 -15.06 -0.14 -6.93 16 18 H 0.06 1.63 7.85 -52.49 -0.41 1.21 16 19 C 0.01 0.20 4.84 -17.43 -0.08 0.11 16 20 N -0.90 -24.94 11.06 55.49 0.61 -24.33 16 21 Si 0.90 21.17 29.58 -169.99 -5.03 16.14 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 C 0.19 3.69 3.45 -68.39 -0.24 3.45 16 26 H 0.07 1.36 7.92 -51.93 -0.41 0.95 16 27 C -0.11 -2.02 1.30 -154.89 -0.20 -2.22 16 28 C -0.13 -2.08 8.95 37.16 0.33 -1.74 16 29 C -0.14 -2.59 7.24 37.16 0.27 -2.32 16 30 N -0.26 -3.74 12.04 33.67 0.41 -3.33 16 31 N -0.48 -5.06 7.36 33.48 0.25 -4.81 16 32 H 0.44 3.23 8.96 -182.61 -1.64 1.59 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.11 0.87 8.12 -51.93 -0.42 0.45 16 38 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.40 4.66 6.81 -40.82 -0.28 4.38 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.45 4.55 -51.93 -0.24 1.21 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.84 5.61 -51.93 -0.29 0.55 16 45 H 0.07 1.81 6.53 -51.93 -0.34 1.47 16 46 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 48 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.04 0.58 5.86 -51.93 -0.30 0.27 16 50 H 0.10 1.95 1.86 -51.93 -0.10 1.85 16 51 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 52 H 0.06 1.29 8.05 -51.93 -0.42 0.88 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -33.35 395.52 -10.24 -43.59 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -9.44 Total: 7.83 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -2.38 Total: -7.23 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.56 Total: -56.31 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.35 -10.24 -43.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087280251.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.582 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds