Wall clock time and date at job start Wed Apr 1 2020 03:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40090 * 126.03565 * 2 1 4 4 C 1.30835 * 108.20470 * 180.02562 * 3 2 1 5 5 C 1.39868 * 108.20361 * 359.97438 * 4 3 2 6 6 C 1.34947 * 126.03854 * 179.69030 * 2 1 3 7 7 C 1.50697 * 126.13052 * 359.97438 * 6 2 1 8 8 C 1.50704 * 109.47281 * 265.00368 * 7 6 2 9 9 O 1.21279 * 119.99684 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00102 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00140 * 179.97438 * 10 8 7 12 12 H 1.08998 * 113.22254 * 25.33584 * 11 10 8 13 13 C 1.50006 * 114.12490 * 252.52771 * 11 10 8 14 14 H 1.09004 * 112.50758 * 322.40172 * 13 11 10 15 15 C 1.50745 * 126.50507 * 104.81299 * 13 11 10 16 16 C 1.54093 * 106.33826 * 161.30144 * 15 13 11 17 17 C 1.52502 * 112.67095 * 304.54362 * 16 15 13 18 18 N 1.48412 * 111.86525 * 46.79217 * 17 16 15 19 19 C 1.36933 * 123.16940 * 128.15588 * 18 17 16 20 20 H 1.07994 * 120.00131 * 205.20954 * 19 18 17 21 21 C 1.38811 * 119.99968 * 25.21088 * 19 18 17 22 22 N 1.31619 * 119.99937 * 13.32995 * 21 19 18 23 23 Si 1.86800 * 120.00286 * 193.31901 * 21 19 18 24 24 H 1.48512 * 109.46574 * 60.00527 * 23 21 19 25 25 H 1.48499 * 109.47499 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47360 * 300.00761 * 23 21 19 27 27 C 1.45379 * 113.66168 * 308.15900 * 18 17 16 28 28 H 1.09002 * 112.08609 * 301.19144 * 27 18 17 29 29 C 1.49959 * 126.68262 * 155.97487 * 27 18 17 30 30 C 1.53003 * 114.08384 * 106.71690 * 29 27 18 31 31 C 1.53001 * 114.24348 * 334.31268 * 29 27 18 32 32 H 1.08996 * 109.47253 * 90.02827 * 1 2 3 33 33 H 1.08997 * 109.47504 * 330.02547 * 1 2 3 34 34 H 1.09004 * 109.46981 * 210.02879 * 1 2 3 35 35 H 1.07996 * 125.89494 * 179.97438 * 4 3 2 36 36 H 1.08002 * 126.03850 * 179.97438 * 5 4 3 37 37 H 1.09005 * 109.46911 * 24.99833 * 7 6 2 38 38 H 1.08995 * 109.47516 * 144.99687 * 7 6 2 39 39 H 0.97010 * 119.99980 * 0.02562 * 10 8 7 40 40 H 1.08991 * 110.04616 * 42.07847 * 15 13 11 41 41 H 1.09008 * 110.11717 * 280.55522 * 15 13 11 42 42 H 1.08992 * 108.84563 * 183.72193 * 16 15 13 43 43 H 1.08995 * 108.84211 * 65.36401 * 16 15 13 44 44 H 1.08991 * 109.00350 * 286.17433 * 17 16 15 45 45 H 1.09007 * 109.00136 * 167.40159 * 17 16 15 46 46 H 0.97005 * 120.00084 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.46755 * 173.92034 * 30 29 27 48 48 H 1.08998 * 109.47515 * 293.92281 * 30 29 27 49 49 H 1.09004 * 109.47044 * 53.92877 * 30 29 27 50 50 H 1.09009 * 109.46947 * 332.58050 * 31 29 27 51 51 H 1.09003 * 109.47344 * 92.57965 * 31 29 27 52 52 H 1.09002 * 109.47167 * 212.58344 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0006 5 6 3.5437 -0.6664 -0.0003 6 6 2.2589 -1.0912 0.0059 7 6 1.7975 -2.5257 0.0142 8 6 1.7620 -3.0339 1.4326 9 8 2.0805 -2.3031 2.3466 10 7 1.3762 -4.3002 1.6852 11 6 1.3422 -4.7944 3.0640 12 1 1.2129 -4.0022 3.8014 13 6 2.4358 -5.7667 3.3940 14 1 2.6600 -6.4392 2.5660 15 6 3.6683 -5.4854 4.2151 16 6 4.2130 -6.8556 4.6626 17 6 3.1732 -7.6871 5.4062 18 7 1.8670 -7.6976 4.7016 19 6 1.1923 -8.8481 4.3914 20 1 0.4982 -8.8607 3.5642 21 6 1.4005 -9.9981 5.1404 22 7 2.0318 -9.9275 6.2931 23 14 0.7844 -11.6460 4.5124 24 1 1.4231 -11.9481 3.2061 25 1 1.1296 -12.7089 5.4902 26 1 -0.6897 -11.5910 4.3416 27 6 1.3715 -6.3713 4.3715 28 1 1.2462 -5.7485 5.2573 29 6 0.4072 -6.0219 3.2776 30 6 -0.9946 -5.6603 3.7728 31 6 0.3973 -7.0100 2.1095 32 1 -0.3633 -0.0005 -1.0276 33 1 -0.3634 0.8902 0.5134 34 1 -0.3633 -0.8898 0.5143 35 1 4.4053 1.3712 -0.0011 36 1 4.4212 -1.2962 -0.0011 37 1 0.7994 -2.5888 -0.4194 38 1 2.4873 -3.1328 -0.5721 39 1 1.1218 -4.8848 0.9541 40 1 3.4079 -4.8833 5.0855 41 1 4.4116 -4.9664 3.6098 42 1 5.0702 -6.6970 5.3168 43 1 4.5419 -7.4082 3.7826 44 1 3.0346 -7.2721 6.4044 45 1 3.5360 -8.7111 5.4963 46 1 2.1776 -10.7312 6.8163 47 1 -1.5992 -5.3171 2.9333 48 1 -1.4596 -6.5387 4.2204 49 1 -0.9236 -4.8675 4.5175 50 1 1.3726 -7.4908 2.0320 51 1 -0.3683 -7.7669 2.2803 52 1 0.1807 -6.4764 1.1840 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087285219.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:51 Heat of formation + Delta-G solvation = 108.427292 kcal Electronic energy + Delta-G solvation = -31892.093672 eV Core-core repulsion = 27895.667315 eV Total energy + Delta-G solvation = -3996.426358 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.45345 -40.96829 -38.90677 -35.36254 -33.62628 -33.31872 -33.02301 -32.23200 -30.21099 -29.44007 -27.87238 -27.33855 -26.88013 -25.75626 -24.41311 -22.40103 -21.33128 -21.19691 -20.23341 -19.81533 -19.31201 -18.44647 -17.18264 -16.97632 -16.57324 -15.65446 -15.49160 -15.32595 -14.67666 -14.53043 -14.15080 -14.02504 -13.92050 -13.86302 -13.53114 -13.18548 -12.95940 -12.82606 -12.73216 -12.64882 -12.61154 -12.50470 -12.17162 -11.91958 -11.82099 -11.39167 -11.18953 -11.06737 -10.88699 -10.77048 -10.75545 -10.46307 -10.30467 -10.15711 -10.07545 -9.90492 -9.85768 -9.44933 -9.31293 -8.91747 -8.67893 -8.60952 -8.43002 -6.61571 -5.76871 -3.19758 1.68358 2.36615 2.61474 2.72266 3.31748 3.34783 3.41012 3.41789 4.22321 4.37750 4.46476 4.62137 4.70649 4.78872 4.90574 4.92693 5.01972 5.06193 5.12532 5.19438 5.20885 5.41324 5.54190 5.54858 5.62328 5.76216 5.80137 5.86566 5.92539 6.01013 6.01241 6.08453 6.14844 6.25853 6.31507 6.36328 6.46080 6.55109 6.57542 6.58306 6.64790 6.68712 6.76028 6.84023 6.85984 7.02262 7.11079 7.41792 7.58439 7.59216 7.69946 7.78736 8.25432 8.39886 9.16523 9.82692 10.47542 11.30927 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.002625 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.747707 B =10663.033085 C =11308.991199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.368 5.368 3 N -0.298 5.298 4 C 0.047 3.953 5 C -0.257 4.257 6 C 0.107 3.893 7 C -0.083 4.083 8 C 0.512 3.488 9 O -0.529 6.529 10 N -0.712 5.712 11 C 0.144 3.856 12 H 0.111 0.889 13 C -0.171 4.171 14 H 0.092 0.908 15 C -0.088 4.088 16 C -0.135 4.135 17 C 0.165 3.835 18 N -0.569 5.569 19 C -0.241 4.241 20 H 0.076 0.924 21 C -0.002 4.002 22 N -0.907 5.907 23 Si 0.900 3.100 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.153 3.847 28 H 0.049 0.951 29 C -0.065 4.065 30 C -0.133 4.133 31 C -0.120 4.120 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.182 0.818 36 H 0.146 0.854 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.399 0.601 40 H 0.052 0.948 41 H 0.041 0.959 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.014 0.986 45 H 0.094 0.906 46 H 0.253 0.747 47 H 0.046 0.954 48 H 0.063 0.937 49 H 0.051 0.949 50 H 0.075 0.925 51 H 0.065 0.935 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 13.964 -14.250 20.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.151 5.151 3 N -0.120 5.120 4 C -0.139 4.139 5 C -0.286 4.286 6 C -0.021 4.021 7 C -0.125 4.125 8 C 0.296 3.704 9 O -0.405 6.405 10 N -0.363 5.363 11 C 0.040 3.960 12 H 0.129 0.871 13 C -0.193 4.193 14 H 0.110 0.890 15 C -0.126 4.126 16 C -0.174 4.174 17 C 0.040 3.960 18 N -0.290 5.290 19 C -0.370 4.370 20 H 0.093 0.907 21 C -0.200 4.200 22 N -0.552 5.552 23 Si 0.730 3.270 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.044 3.956 28 H 0.066 0.934 29 C -0.067 4.067 30 C -0.190 4.190 31 C -0.177 4.177 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.199 0.801 36 H 0.163 0.837 37 H 0.121 0.879 38 H 0.138 0.862 39 H 0.234 0.766 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.033 0.967 45 H 0.112 0.888 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.082 0.918 49 H 0.070 0.930 50 H 0.094 0.906 51 H 0.084 0.916 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.547 15.296 -13.445 20.524 hybrid contribution 0.191 -1.929 -0.458 1.992 sum -2.357 13.366 -13.903 19.430 Atomic orbital electron populations 1.21825 0.74687 1.04664 1.03020 1.48375 1.06346 1.03333 1.57036 1.77327 1.01910 1.07748 1.25010 1.23772 0.95179 0.95032 0.99894 1.21180 0.96148 0.95087 1.16231 1.20238 0.91389 0.88942 1.01573 1.20314 1.04448 0.91077 0.96662 1.20256 0.77579 0.82219 0.90328 1.90755 1.47174 1.56266 1.46339 1.46072 1.67699 1.12492 1.10033 1.22421 0.97298 0.94007 0.82324 0.87123 1.23331 0.96232 0.98831 1.00867 0.89010 1.21014 0.96374 0.96999 0.98163 1.22093 0.99183 0.95813 1.00314 1.20897 0.83447 1.00112 0.91566 1.43852 1.17488 0.99114 1.68538 1.19234 1.21249 0.87288 1.09272 0.90673 1.25061 1.00799 0.98874 0.95227 1.69953 1.45959 1.27576 1.11748 0.86404 0.78580 0.84048 0.77927 1.21130 1.21719 1.21023 1.21410 0.92377 0.89261 0.92555 0.93410 1.21838 0.93773 0.94051 0.97012 1.21707 0.95710 1.01506 1.00071 1.21641 1.03934 0.97747 0.94381 0.90754 0.89199 0.89756 0.80068 0.83670 0.87950 0.86213 0.76592 0.92932 0.94038 0.93321 0.93335 0.96734 0.88782 0.93654 0.93474 0.91779 0.93004 0.90569 0.91603 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.77 11.07 59.85 0.66 1.44 16 2 N -0.37 -4.32 4.01 -63.89 -0.26 -4.58 16 3 N -0.30 -3.96 12.58 30.62 0.39 -3.58 16 4 C 0.05 0.54 12.03 -17.37 -0.21 0.33 16 5 C -0.26 -3.01 10.72 -40.01 -0.43 -3.43 16 6 C 0.11 1.21 5.42 -82.26 -0.45 0.77 16 7 C -0.08 -0.71 5.80 -29.03 -0.17 -0.88 16 8 C 0.51 6.33 7.82 -10.99 -0.09 6.24 16 9 O -0.53 -9.03 15.67 5.56 0.09 -8.95 16 10 N -0.71 -8.27 5.33 -57.66 -0.31 -8.58 16 11 C 0.14 2.12 3.49 -71.84 -0.25 1.87 16 12 H 0.11 1.83 7.48 -51.93 -0.39 1.44 16 13 C -0.17 -2.89 2.84 -95.29 -0.27 -3.16 16 14 H 0.09 1.62 6.11 -51.93 -0.32 1.30 16 15 C -0.09 -1.55 6.09 -27.29 -0.17 -1.71 16 16 C -0.13 -2.57 5.90 -26.42 -0.16 -2.73 16 17 C 0.16 3.82 5.34 -3.24 -0.02 3.80 16 18 N -0.57 -13.24 2.90 -169.23 -0.49 -13.73 16 19 C -0.24 -6.09 9.11 -15.06 -0.14 -6.23 16 20 H 0.08 1.80 5.24 -52.49 -0.28 1.53 16 21 C 0.00 -0.04 5.13 -17.43 -0.09 -0.13 16 22 N -0.91 -25.57 10.95 55.49 0.61 -24.96 16 23 Si 0.90 20.92 29.57 -169.99 -5.03 15.90 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.15 2.97 3.02 -71.98 -0.22 2.75 16 28 H 0.05 1.00 7.97 -51.93 -0.41 0.59 16 29 C -0.07 -1.01 1.36 -158.56 -0.22 -1.23 16 30 C -0.13 -1.91 9.21 37.16 0.34 -1.57 16 31 C -0.12 -1.74 6.95 37.16 0.26 -1.49 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.57 7.53 -51.93 -0.39 0.18 16 35 H 0.18 1.49 8.06 -52.49 -0.42 1.06 16 36 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.10 0.59 7.49 -51.93 -0.39 0.20 16 38 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.40 3.62 6.74 -40.82 -0.28 3.35 16 40 H 0.05 0.95 8.03 -51.93 -0.42 0.53 16 41 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 2.45 5.99 -51.93 -0.31 2.14 16 46 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 50 H 0.08 1.27 5.84 -51.92 -0.30 0.96 16 51 H 0.07 1.03 7.00 -51.93 -0.36 0.66 16 52 H 0.04 0.41 6.55 -51.93 -0.34 0.07 16 LS Contribution 401.41 15.07 6.05 6.05 Total: -1.00 -33.14 401.41 -8.94 -42.08 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -8.39 Total: 5.70 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -1.60 Total: -5.36 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.06 Total: -55.42 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.14 -8.94 -42.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087285219.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.507 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds