Wall clock time and date at job start Wed Apr 1 2020 03:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40090 * 126.03565 * 2 1 4 4 C 1.30835 * 108.20470 * 180.02562 * 3 2 1 5 5 C 1.39868 * 108.20361 * 359.97438 * 4 3 2 6 6 C 1.34947 * 126.03854 * 179.69030 * 2 1 3 7 7 C 1.50697 * 126.13052 * 359.97438 * 6 2 1 8 8 C 1.50704 * 109.47281 * 265.00368 * 7 6 2 9 9 O 1.21279 * 119.99684 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00102 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00140 * 179.97438 * 10 8 7 12 12 H 1.08998 * 113.22254 * 25.33584 * 11 10 8 13 13 C 1.50006 * 114.12490 * 252.52771 * 11 10 8 14 14 H 1.09004 * 112.50758 * 322.40172 * 13 11 10 15 15 C 1.50745 * 126.50507 * 104.81299 * 13 11 10 16 16 C 1.54093 * 106.33826 * 161.30144 * 15 13 11 17 17 C 1.52502 * 112.67095 * 304.54362 * 16 15 13 18 18 N 1.48412 * 111.86525 * 46.79217 * 17 16 15 19 19 C 1.36933 * 123.16940 * 128.15588 * 18 17 16 20 20 H 1.07994 * 120.00131 * 205.20954 * 19 18 17 21 21 C 1.38811 * 119.99968 * 25.21088 * 19 18 17 22 22 N 1.31619 * 119.99937 * 13.32995 * 21 19 18 23 23 Si 1.86800 * 120.00286 * 193.31901 * 21 19 18 24 24 H 1.48512 * 109.46574 * 60.00527 * 23 21 19 25 25 H 1.48499 * 109.47499 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47360 * 300.00761 * 23 21 19 27 27 C 1.45379 * 113.66168 * 308.15900 * 18 17 16 28 28 H 1.09002 * 112.08609 * 301.19144 * 27 18 17 29 29 C 1.49959 * 126.68262 * 155.97487 * 27 18 17 30 30 C 1.53003 * 114.08384 * 106.71690 * 29 27 18 31 31 C 1.53001 * 114.24348 * 334.31268 * 29 27 18 32 32 H 1.08996 * 109.47253 * 90.02827 * 1 2 3 33 33 H 1.08997 * 109.47504 * 330.02547 * 1 2 3 34 34 H 1.09004 * 109.46981 * 210.02879 * 1 2 3 35 35 H 1.07996 * 125.89494 * 179.97438 * 4 3 2 36 36 H 1.08002 * 126.03850 * 179.97438 * 5 4 3 37 37 H 1.09005 * 109.46911 * 24.99833 * 7 6 2 38 38 H 1.08995 * 109.47516 * 144.99687 * 7 6 2 39 39 H 0.97010 * 119.99980 * 0.02562 * 10 8 7 40 40 H 1.08991 * 110.04616 * 42.07847 * 15 13 11 41 41 H 1.09008 * 110.11717 * 280.55522 * 15 13 11 42 42 H 1.08992 * 108.84563 * 183.72193 * 16 15 13 43 43 H 1.08995 * 108.84211 * 65.36401 * 16 15 13 44 44 H 1.08991 * 109.00350 * 286.17433 * 17 16 15 45 45 H 1.09007 * 109.00136 * 167.40159 * 17 16 15 46 46 H 0.97005 * 120.00084 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.46755 * 173.92034 * 30 29 27 48 48 H 1.08998 * 109.47515 * 293.92281 * 30 29 27 49 49 H 1.09004 * 109.47044 * 53.92877 * 30 29 27 50 50 H 1.09009 * 109.46947 * 332.58050 * 31 29 27 51 51 H 1.09003 * 109.47344 * 92.57965 * 31 29 27 52 52 H 1.09002 * 109.47167 * 212.58344 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0006 5 6 3.5437 -0.6664 -0.0003 6 6 2.2589 -1.0912 0.0059 7 6 1.7975 -2.5257 0.0142 8 6 1.7620 -3.0339 1.4326 9 8 2.0805 -2.3031 2.3466 10 7 1.3762 -4.3002 1.6852 11 6 1.3422 -4.7944 3.0640 12 1 1.2129 -4.0022 3.8014 13 6 2.4358 -5.7667 3.3940 14 1 2.6600 -6.4392 2.5660 15 6 3.6683 -5.4854 4.2151 16 6 4.2130 -6.8556 4.6626 17 6 3.1732 -7.6871 5.4062 18 7 1.8670 -7.6976 4.7016 19 6 1.1923 -8.8481 4.3914 20 1 0.4982 -8.8607 3.5642 21 6 1.4005 -9.9981 5.1404 22 7 2.0318 -9.9275 6.2931 23 14 0.7844 -11.6460 4.5124 24 1 1.4231 -11.9481 3.2061 25 1 1.1296 -12.7089 5.4902 26 1 -0.6897 -11.5910 4.3416 27 6 1.3715 -6.3713 4.3715 28 1 1.2462 -5.7485 5.2573 29 6 0.4072 -6.0219 3.2776 30 6 -0.9946 -5.6603 3.7728 31 6 0.3973 -7.0100 2.1095 32 1 -0.3633 -0.0005 -1.0276 33 1 -0.3634 0.8902 0.5134 34 1 -0.3633 -0.8898 0.5143 35 1 4.4053 1.3712 -0.0011 36 1 4.4212 -1.2962 -0.0011 37 1 0.7994 -2.5888 -0.4194 38 1 2.4873 -3.1328 -0.5721 39 1 1.1218 -4.8848 0.9541 40 1 3.4079 -4.8833 5.0855 41 1 4.4116 -4.9664 3.6098 42 1 5.0702 -6.6970 5.3168 43 1 4.5419 -7.4082 3.7826 44 1 3.0346 -7.2721 6.4044 45 1 3.5360 -8.7111 5.4963 46 1 2.1776 -10.7312 6.8163 47 1 -1.5992 -5.3171 2.9333 48 1 -1.4596 -6.5387 4.2204 49 1 -0.9236 -4.8675 4.5175 50 1 1.3726 -7.4908 2.0320 51 1 -0.3683 -7.7669 2.2803 52 1 0.1807 -6.4764 1.1840 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087285219.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:50 Heat of formation + Delta-G solvation = 87.265115 kcal Electronic energy + Delta-G solvation = -31893.011333 eV Core-core repulsion = 27895.667315 eV Total energy + Delta-G solvation = -3997.344019 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.45375 -42.11167 -40.00118 -36.95525 -34.77185 -34.55604 -34.26202 -33.04278 -32.00887 -30.83875 -28.75370 -28.56839 -27.55744 -27.43099 -25.95864 -23.89839 -22.62009 -22.07378 -21.49347 -20.91055 -20.62096 -19.76478 -18.53909 -18.00178 -17.75741 -17.00212 -16.45424 -16.25005 -16.20565 -15.70988 -15.55683 -15.27446 -15.03365 -14.91965 -14.68476 -14.62566 -14.33062 -14.13010 -14.00628 -13.67291 -13.47337 -13.38885 -13.24707 -13.06288 -12.93684 -12.81206 -12.77040 -12.69049 -12.42671 -12.33130 -12.12026 -11.89219 -11.65610 -11.63192 -11.59134 -11.51489 -11.09484 -10.91049 -10.58817 -10.26335 -10.16282 -9.84186 -9.42080 -8.52069 -7.75625 -5.20764 0.86954 1.49640 1.51410 1.57245 1.66062 1.69723 1.88601 2.35582 2.57822 3.28845 3.40357 3.46736 3.49511 3.71181 3.73483 3.88293 3.95284 4.12411 4.16417 4.26013 4.38701 4.39560 4.41764 4.50590 4.53025 4.63983 4.66556 4.67282 4.70721 4.78079 4.81432 4.84503 4.86366 4.99042 5.05700 5.12148 5.15188 5.19594 5.23446 5.27345 5.34087 5.37254 5.50894 5.56412 5.63731 5.75450 5.76638 5.78036 5.84764 6.13426 6.44028 6.66601 6.77012 7.17962 7.34428 7.91235 8.55428 9.30426 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.002625 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.747707 B =10663.033085 C =11308.991199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.376 5.376 3 N -0.336 5.336 4 C 0.037 3.963 5 C -0.279 4.279 6 C 0.099 3.901 7 C -0.073 4.073 8 C 0.515 3.485 9 O -0.580 6.580 10 N -0.698 5.698 11 C 0.165 3.835 12 H 0.094 0.906 13 C -0.155 4.155 14 H 0.094 0.906 15 C -0.085 4.085 16 C -0.123 4.123 17 C 0.171 3.829 18 N -0.582 5.582 19 C -0.233 4.233 20 H 0.091 0.909 21 C -0.064 4.064 22 N -0.946 5.946 23 Si 0.961 3.039 24 H -0.276 1.276 25 H -0.304 1.304 26 H -0.275 1.275 27 C 0.128 3.872 28 H 0.026 0.974 29 C -0.056 4.056 30 C -0.130 4.130 31 C -0.117 4.117 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.204 0.796 36 H 0.155 0.845 37 H 0.140 0.860 38 H 0.151 0.849 39 H 0.416 0.584 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.051 0.949 44 H -0.016 1.016 45 H 0.061 0.939 46 H 0.244 0.756 47 H 0.079 0.921 48 H 0.045 0.955 49 H 0.047 0.953 50 H 0.056 0.944 51 H 0.055 0.945 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 14.571 -17.915 23.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.158 5.158 3 N -0.158 5.158 4 C -0.148 4.148 5 C -0.308 4.308 6 C -0.030 4.030 7 C -0.114 4.114 8 C 0.302 3.698 9 O -0.459 6.459 10 N -0.350 5.350 11 C 0.059 3.941 12 H 0.112 0.888 13 C -0.176 4.176 14 H 0.112 0.888 15 C -0.122 4.122 16 C -0.162 4.162 17 C 0.046 3.954 18 N -0.304 5.304 19 C -0.362 4.362 20 H 0.108 0.892 21 C -0.258 4.258 22 N -0.595 5.595 23 Si 0.790 3.210 24 H -0.202 1.202 25 H -0.231 1.231 26 H -0.201 1.201 27 C 0.020 3.980 28 H 0.043 0.957 29 C -0.057 4.057 30 C -0.187 4.187 31 C -0.174 4.174 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.221 0.779 36 H 0.173 0.827 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.255 0.745 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.002 0.998 45 H 0.080 0.920 46 H 0.053 0.947 47 H 0.098 0.902 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.075 0.925 51 H 0.074 0.926 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.698 15.919 -17.176 23.709 hybrid contribution 0.531 -2.030 0.719 2.218 sum -3.167 13.889 -16.457 21.766 Atomic orbital electron populations 1.22125 0.72915 1.05200 1.04827 1.48712 1.07537 1.03066 1.56534 1.77258 1.02811 1.09254 1.26507 1.24246 0.95552 0.95756 0.99227 1.21509 0.97059 0.95344 1.16905 1.20698 0.91428 0.90127 1.00775 1.20403 1.07469 0.89405 0.94118 1.20859 0.75980 0.81551 0.91418 1.90756 1.49293 1.57523 1.48309 1.45820 1.67415 1.12783 1.08957 1.21860 0.95345 0.92965 0.83971 0.88808 1.23261 0.95370 0.99218 0.99760 0.88832 1.20968 0.97218 0.95832 0.98222 1.21910 0.98139 0.96061 1.00097 1.20702 0.84893 0.98741 0.91109 1.44043 1.17757 1.00307 1.68254 1.19699 1.20073 0.87770 1.08707 0.89185 1.25811 1.02154 1.02140 0.95649 1.70148 1.48423 1.27584 1.13304 0.85425 0.78392 0.80028 0.77165 1.20188 1.23110 1.20121 1.21674 0.96171 0.86904 0.93250 0.95679 1.21833 0.93810 0.94264 0.95787 1.21676 0.95216 1.00658 1.01145 1.21599 1.02461 0.97521 0.95805 0.88261 0.89519 0.88446 0.77945 0.82684 0.84187 0.83141 0.74513 0.93854 0.92267 0.91983 0.92992 0.99820 0.92021 0.94672 0.90228 0.93625 0.93345 0.92545 0.92639 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 11.07 127.77 1.41 2.57 16 2 N -0.38 -8.03 4.01 -356.04 -1.43 -9.46 16 3 N -0.34 -8.61 12.58 -57.03 -0.72 -9.32 16 4 C 0.04 0.81 12.03 85.24 1.02 1.84 16 5 C -0.28 -6.01 10.72 21.99 0.24 -5.78 16 6 C 0.10 1.97 5.42 41.41 0.22 2.19 16 7 C -0.07 -0.91 5.80 29.10 0.17 -0.74 16 8 C 0.52 10.86 7.82 87.66 0.69 11.54 16 9 O -0.58 -18.63 15.67 -3.03 -0.05 -18.68 16 10 N -0.70 -13.30 5.33 -454.74 -2.42 -15.72 16 11 C 0.16 4.48 3.49 42.46 0.15 4.63 16 12 H 0.09 3.00 7.48 -2.39 -0.02 2.98 16 13 C -0.15 -5.02 2.84 -13.82 -0.04 -5.06 16 14 H 0.09 3.07 6.11 -2.38 -0.01 3.06 16 15 C -0.08 -2.92 6.09 30.23 0.18 -2.73 16 16 C -0.12 -4.70 5.90 30.80 0.18 -4.52 16 17 C 0.17 8.27 5.34 85.85 0.46 8.73 16 18 N -0.58 -27.66 2.90 -689.32 -2.00 -29.66 16 19 C -0.23 -11.84 9.11 84.03 0.77 -11.07 16 20 H 0.09 4.24 5.24 -2.91 -0.02 4.22 16 21 C -0.06 -3.46 5.13 84.86 0.44 -3.03 16 22 N -0.95 -55.77 10.95 21.65 0.24 -55.53 16 23 Si 0.96 43.57 29.57 68.60 2.03 45.60 16 24 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 27 C 0.13 4.97 3.02 42.97 0.13 5.10 16 28 H 0.03 1.10 7.97 -2.39 -0.02 1.08 16 29 C -0.06 -1.61 1.36 -54.80 -0.07 -1.68 16 30 C -0.13 -3.46 9.21 71.98 0.66 -2.80 16 31 C -0.12 -3.00 6.95 71.98 0.50 -2.50 16 32 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 0.97 7.53 -2.38 -0.02 0.95 16 35 H 0.20 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 37 H 0.14 0.73 7.49 -2.38 -0.02 0.71 16 38 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.42 5.17 6.74 -92.70 -0.62 4.54 16 40 H 0.04 1.57 8.03 -2.39 -0.02 1.55 16 41 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 44 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 45 H 0.06 3.39 5.99 -2.38 -0.01 3.37 16 46 H 0.24 14.17 8.31 -92.70 -0.77 13.40 16 47 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.05 1.31 8.12 -2.38 -0.02 1.29 16 50 H 0.06 1.70 5.84 -2.38 -0.01 1.69 16 51 H 0.05 1.56 7.00 -2.39 -0.02 1.54 16 52 H 0.08 1.37 6.55 -2.39 -0.02 1.36 16 Total: -1.00 -76.71 401.41 3.06 -73.65 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.30 Total: 22.43 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 7.11 Total: -3.30 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -6.33 Total: -119.70 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.05 Total: -18.68 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -76.71 3.06 -73.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087285219.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.918 kcal (2) G-P(sol) polarization free energy of solvation -76.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds