Wall clock time and date at job start Wed Apr 1 2020 03:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40081 * 126.03927 * 2 1 4 4 C 1.30835 * 108.20490 * 180.02562 * 3 2 1 5 5 C 1.39868 * 108.20326 * 359.78227 * 4 3 2 6 6 C 1.34943 * 126.03387 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.12825 * 359.94172 * 6 2 1 8 8 C 1.50700 * 109.47393 * 264.99907 * 7 6 2 9 9 O 1.21285 * 119.99626 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00228 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99783 * 180.02562 * 10 8 7 12 12 H 1.08996 * 112.86611 * 26.76835 * 11 10 8 13 13 C 1.54147 * 113.63766 * 255.49514 * 11 10 8 14 14 H 1.09003 * 114.24608 * 26.60001 * 13 11 10 15 15 C 1.53060 * 112.17975 * 157.32236 * 13 11 10 16 16 C 1.53024 * 109.40921 * 146.63999 * 15 13 11 17 17 C 1.52197 * 108.80792 * 295.18009 * 16 15 13 18 18 N 1.45889 * 110.25475 * 57.25339 * 17 16 15 19 19 C 1.36929 * 118.48803 * 141.62254 * 18 17 16 20 20 H 1.08004 * 120.00369 * 204.99041 * 19 18 17 21 21 C 1.38813 * 120.00180 * 24.97748 * 19 18 17 22 22 N 1.31623 * 120.00241 * 205.30456 * 21 19 18 23 23 Si 1.86806 * 119.99948 * 25.30521 * 21 19 18 24 24 H 1.48498 * 109.46937 * 271.79416 * 23 21 19 25 25 H 1.48499 * 109.47118 * 151.79128 * 23 21 19 26 26 H 1.48504 * 109.46778 * 31.79225 * 23 21 19 27 27 C 1.45098 * 123.02592 * 321.33599 * 18 17 16 28 28 H 1.08999 * 112.25196 * 156.05422 * 27 18 17 29 29 C 1.51997 * 114.66674 * 158.10287 * 11 10 8 30 30 C 1.52995 * 113.08316 * 332.87946 * 29 11 10 31 31 C 1.52993 * 113.74023 * 202.26596 * 29 11 10 32 32 H 1.08996 * 109.47487 * 269.97814 * 1 2 3 33 33 H 1.09004 * 109.46836 * 29.97546 * 1 2 3 34 34 H 1.09000 * 109.47082 * 149.96926 * 1 2 3 35 35 H 1.08003 * 125.89912 * 179.97438 * 4 3 2 36 36 H 1.08000 * 126.04139 * 180.23221 * 5 4 3 37 37 H 1.09003 * 109.46733 * 145.00313 * 7 6 2 38 38 H 1.08998 * 109.47266 * 25.00059 * 7 6 2 39 39 H 0.96991 * 119.99739 * 0.02562 * 10 8 7 40 40 H 1.08994 * 109.48283 * 266.61800 * 15 13 11 41 41 H 1.08999 * 109.48101 * 26.64921 * 15 13 11 42 42 H 1.09001 * 109.55901 * 55.19110 * 16 15 13 43 43 H 1.09001 * 109.56287 * 175.40746 * 16 15 13 44 44 H 1.08998 * 108.45851 * 297.48625 * 17 16 15 45 45 H 1.09000 * 109.97809 * 177.97300 * 17 16 15 46 46 H 0.97003 * 119.99920 * 5.10570 * 22 21 19 47 47 H 1.09001 * 109.47350 * 157.52200 * 30 29 11 48 48 H 1.08998 * 109.47194 * 277.51633 * 30 29 11 49 49 H 1.08998 * 109.47745 * 37.52159 * 30 29 11 50 50 H 1.09005 * 109.47619 * 286.66265 * 31 29 11 51 51 H 1.09006 * 109.47206 * 46.66217 * 31 29 11 52 52 H 1.08998 * 109.47264 * 166.65880 * 31 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5346 0.7320 -0.0006 5 6 3.5436 -0.6666 0.0041 6 6 2.2588 -1.0912 -0.0005 7 6 1.7972 -2.5258 0.0001 8 6 1.7624 -3.0418 1.4156 9 8 2.0806 -2.3158 2.3336 10 7 1.3766 -4.3095 1.6615 11 6 1.3422 -4.8109 3.0377 12 1 1.1876 -4.0209 3.7725 13 6 2.5119 -5.7543 3.3811 14 1 3.4117 -5.5856 2.7894 15 6 2.7800 -5.8179 4.8867 16 6 3.2627 -7.2216 5.2585 17 6 2.1384 -8.2129 4.9949 18 7 1.7179 -8.1405 3.5998 19 6 1.3901 -9.3033 2.9552 20 1 1.4685 -9.3653 1.8798 21 6 0.9571 -10.4025 3.6840 22 7 1.1130 -11.6163 3.1994 23 14 0.1531 -10.1592 5.3525 24 1 1.1984 -10.1364 6.4070 25 1 -0.7905 -11.2754 5.6148 26 1 -0.5877 -8.8721 5.3619 27 6 1.6254 -6.8925 2.8655 28 1 1.7098 -7.0398 1.7888 29 6 0.4327 -6.0094 3.2536 30 6 -0.7267 -6.0698 2.2573 31 6 -0.0173 -6.1875 4.7050 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3633 -0.8897 -0.5143 35 1 4.4054 1.3709 -0.0011 36 1 4.4210 -1.2964 0.0084 37 1 2.4868 -3.1296 -0.5898 38 1 0.7990 -2.5865 -0.4334 39 1 1.1218 -4.8899 0.9273 40 1 3.5456 -5.0885 5.1508 41 1 1.8616 -5.5936 5.4293 42 1 4.1319 -7.4806 4.6539 43 1 3.5320 -7.2472 6.3144 44 1 1.2971 -7.9602 5.6402 45 1 2.4741 -9.2253 5.2197 46 1 1.5960 -11.7486 2.3686 47 1 -1.0914 -7.0945 2.1857 48 1 -1.5330 -5.4204 2.5982 49 1 -0.3821 -5.7377 1.2780 50 1 0.8171 -6.5567 5.3015 51 1 -0.3516 -5.2290 5.1020 52 1 -0.8379 -6.9037 4.7457 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087285220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:55 Heat of formation + Delta-G solvation = 109.508521 kcal Electronic energy + Delta-G solvation = -32202.030675 eV Core-core repulsion = 28205.651203 eV Total energy + Delta-G solvation = -3996.379472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.53733 -41.18732 -39.05367 -35.72526 -33.68193 -33.39958 -32.91195 -32.24148 -30.93760 -30.13702 -27.97884 -27.12113 -26.91633 -25.45481 -24.66812 -22.39688 -21.61652 -21.30633 -20.91895 -19.86733 -19.60458 -17.94203 -17.47702 -17.18752 -16.93011 -15.94413 -15.51232 -15.47786 -15.22185 -14.67252 -14.43673 -14.34977 -13.97432 -13.86662 -13.55502 -13.39773 -13.19464 -12.92938 -12.88595 -12.74279 -12.65739 -12.41935 -12.29108 -12.05943 -12.00984 -11.83895 -11.64670 -11.35789 -10.95864 -10.81144 -10.79962 -10.40378 -10.23560 -10.05353 -9.91656 -9.70306 -9.57051 -9.42645 -9.35507 -9.19543 -8.75692 -8.64959 -8.44247 -6.97622 -6.36888 -3.33317 1.64086 2.31761 2.52368 2.67342 3.18764 3.39992 3.51412 3.66998 4.17016 4.32895 4.57969 4.60883 4.68783 4.80460 4.84731 4.91626 4.96313 4.98045 5.06215 5.13861 5.17423 5.18492 5.42865 5.48603 5.50908 5.57615 5.58657 5.69753 5.79503 5.90411 5.92795 5.96709 5.97922 6.09249 6.14240 6.21898 6.29804 6.33029 6.33837 6.42207 6.51025 6.53329 6.57970 6.67362 6.73212 6.77553 6.80969 6.94116 7.01232 7.47861 7.54688 8.00545 8.16032 8.43499 9.01962 9.61202 10.10426 11.07436 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002702 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.622321 B =10358.494426 C =10607.956040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.367 5.367 3 N -0.298 5.298 4 C 0.046 3.954 5 C -0.256 4.256 6 C 0.105 3.895 7 C -0.082 4.082 8 C 0.515 3.485 9 O -0.528 6.528 10 N -0.704 5.704 11 C 0.128 3.872 12 H 0.094 0.906 13 C -0.130 4.130 14 H 0.071 0.929 15 C -0.111 4.111 16 C -0.133 4.133 17 C 0.127 3.873 18 N -0.578 5.578 19 C -0.353 4.353 20 H 0.066 0.934 21 C -0.006 4.006 22 N -0.915 5.915 23 Si 1.044 2.956 24 H -0.295 1.295 25 H -0.302 1.302 26 H -0.279 1.279 27 C 0.190 3.810 28 H 0.076 0.924 29 C -0.117 4.117 30 C -0.128 4.128 31 C -0.144 4.144 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.183 0.817 36 H 0.146 0.854 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.401 0.599 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.025 0.975 45 H 0.071 0.929 46 H 0.264 0.736 47 H 0.065 0.935 48 H 0.044 0.956 49 H 0.043 0.957 50 H 0.091 0.909 51 H 0.041 0.959 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 18.794 -5.872 19.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.150 5.150 3 N -0.119 5.119 4 C -0.139 4.139 5 C -0.286 4.286 6 C -0.023 4.023 7 C -0.124 4.124 8 C 0.300 3.700 9 O -0.404 6.404 10 N -0.356 5.356 11 C 0.023 3.977 12 H 0.112 0.888 13 C -0.151 4.151 14 H 0.089 0.911 15 C -0.148 4.148 16 C -0.171 4.171 17 C 0.002 3.998 18 N -0.297 5.297 19 C -0.482 4.482 20 H 0.084 0.916 21 C -0.208 4.208 22 N -0.554 5.554 23 Si 0.875 3.125 24 H -0.223 1.223 25 H -0.230 1.230 26 H -0.205 1.205 27 C 0.079 3.921 28 H 0.093 0.907 29 C -0.121 4.121 30 C -0.185 4.185 31 C -0.200 4.200 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.200 0.800 36 H 0.163 0.837 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.237 0.763 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.109 0.891 51 H 0.060 0.940 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.541 19.516 -3.985 19.978 hybrid contribution 1.099 -0.176 -1.664 2.002 sum -0.442 19.340 -5.649 20.153 Atomic orbital electron populations 1.21845 0.74649 1.04191 1.03604 1.48378 1.06378 1.03335 1.56913 1.77331 1.01902 1.07710 1.24987 1.23777 0.95185 0.95020 0.99925 1.21178 0.96127 0.95094 1.16187 1.20221 0.91412 0.88894 1.01760 1.20291 1.04617 0.91102 0.96383 1.20240 0.77369 0.81925 0.90472 1.90752 1.47108 1.56579 1.45962 1.45733 1.67804 1.12619 1.09427 1.21808 0.97909 0.95409 0.82604 0.88781 1.23248 0.97408 0.97376 0.97084 0.91061 1.21605 1.01677 0.97139 0.94411 1.21708 0.99763 0.95430 1.00240 1.21091 0.94276 0.98481 0.85953 1.43491 1.75245 1.02534 1.08402 1.20229 1.45035 0.89717 0.93187 0.91578 1.26070 0.98523 0.91934 1.04291 1.70876 1.41504 1.21034 1.21964 0.84203 0.77063 0.74926 0.76281 1.22263 1.22995 1.20530 1.21302 0.91079 0.84426 0.95245 0.90660 1.22661 0.96498 0.96057 0.96868 1.21615 0.97417 1.02151 0.97351 1.22187 1.03053 1.00344 0.94439 0.90622 0.89211 0.89695 0.80037 0.83652 0.86063 0.87819 0.76255 0.92795 0.90136 0.91867 0.92187 0.95737 0.91140 0.92568 0.91604 0.93731 0.93782 0.89073 0.94017 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 11.27 59.85 0.67 1.43 16 2 N -0.37 -4.25 4.01 -63.88 -0.26 -4.51 16 3 N -0.30 -3.88 12.58 30.62 0.39 -3.50 16 4 C 0.05 0.52 12.03 -17.37 -0.21 0.32 16 5 C -0.26 -2.93 10.72 -40.01 -0.43 -3.36 16 6 C 0.11 1.18 5.42 -82.26 -0.45 0.73 16 7 C -0.08 -0.70 5.99 -29.03 -0.17 -0.87 16 8 C 0.52 6.27 7.82 -10.99 -0.09 6.18 16 9 O -0.53 -8.77 15.67 5.55 0.09 -8.68 16 10 N -0.70 -8.24 4.73 -53.73 -0.25 -8.50 16 11 C 0.13 1.85 3.25 -67.85 -0.22 1.63 16 12 H 0.09 1.49 7.37 -51.93 -0.38 1.10 16 13 C -0.13 -2.07 4.08 -89.96 -0.37 -2.43 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.11 -1.72 5.19 -26.69 -0.14 -1.86 16 16 C -0.13 -2.25 6.02 -27.13 -0.16 -2.41 16 17 C 0.13 2.61 3.33 -4.78 -0.02 2.60 16 18 N -0.58 -12.66 2.48 -167.31 -0.41 -13.07 16 19 C -0.35 -9.23 9.74 -15.06 -0.15 -9.38 16 20 H 0.07 1.85 8.02 -52.48 -0.42 1.43 16 21 C -0.01 -0.17 5.04 -17.43 -0.09 -0.26 16 22 N -0.92 -27.36 13.70 55.49 0.76 -26.60 16 23 Si 1.04 25.03 24.47 -169.99 -4.16 20.87 16 24 H -0.29 -6.70 6.54 56.52 0.37 -6.33 16 25 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 26 H -0.28 -6.22 5.69 56.52 0.32 -5.90 16 27 C 0.19 3.43 3.46 -68.38 -0.24 3.19 16 28 H 0.08 1.38 7.92 -51.93 -0.41 0.97 16 29 C -0.12 -1.84 1.30 -154.90 -0.20 -2.04 16 30 C -0.13 -1.83 8.95 37.16 0.33 -1.50 16 31 C -0.14 -2.38 7.22 37.15 0.27 -2.11 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.43 6.98 -51.93 -0.36 0.07 16 35 H 0.18 1.44 8.06 -52.48 -0.42 1.01 16 36 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.59 6.95 -51.93 -0.36 0.23 16 39 H 0.40 3.88 6.83 -40.82 -0.28 3.60 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.23 4.59 -51.93 -0.24 0.99 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.03 0.51 3.73 -51.93 -0.19 0.32 16 45 H 0.07 1.62 5.54 -51.93 -0.29 1.33 16 46 H 0.26 7.84 8.73 -40.82 -0.36 7.48 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.04 0.52 5.87 -51.93 -0.30 0.21 16 50 H 0.09 1.58 1.84 -51.93 -0.10 1.48 16 51 H 0.04 0.60 8.10 -51.93 -0.42 0.18 16 52 H 0.06 1.13 6.84 -51.93 -0.36 0.78 16 LS Contribution 386.50 15.07 5.82 5.82 Total: -1.00 -34.06 386.50 -7.70 -41.76 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -8.03 Total: 6.56 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.65 Total: -10.15 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.22 Total: -56.18 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -4.16 Total: 20.87 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.06 -7.70 -41.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087285220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.265 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds