Wall clock time and date at job start Wed Apr 1 2020 03:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40081 * 126.03927 * 2 1 4 4 C 1.30835 * 108.20490 * 180.02562 * 3 2 1 5 5 C 1.39868 * 108.20326 * 359.78227 * 4 3 2 6 6 C 1.34943 * 126.03387 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.12825 * 359.94172 * 6 2 1 8 8 C 1.50700 * 109.47393 * 264.99907 * 7 6 2 9 9 O 1.21285 * 119.99626 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00228 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99783 * 180.02562 * 10 8 7 12 12 H 1.08996 * 112.86611 * 26.76835 * 11 10 8 13 13 C 1.54147 * 113.63766 * 255.49514 * 11 10 8 14 14 H 1.09003 * 114.24608 * 26.60001 * 13 11 10 15 15 C 1.53060 * 112.17975 * 157.32236 * 13 11 10 16 16 C 1.53024 * 109.40921 * 146.63999 * 15 13 11 17 17 C 1.52197 * 108.80792 * 295.18009 * 16 15 13 18 18 N 1.45889 * 110.25475 * 57.25339 * 17 16 15 19 19 C 1.36929 * 118.48803 * 141.62254 * 18 17 16 20 20 H 1.08004 * 120.00369 * 204.99041 * 19 18 17 21 21 C 1.38813 * 120.00180 * 24.97748 * 19 18 17 22 22 N 1.31623 * 120.00241 * 205.30456 * 21 19 18 23 23 Si 1.86806 * 119.99948 * 25.30521 * 21 19 18 24 24 H 1.48498 * 109.46937 * 271.79416 * 23 21 19 25 25 H 1.48499 * 109.47118 * 151.79128 * 23 21 19 26 26 H 1.48504 * 109.46778 * 31.79225 * 23 21 19 27 27 C 1.45098 * 123.02592 * 321.33599 * 18 17 16 28 28 H 1.08999 * 112.25196 * 156.05422 * 27 18 17 29 29 C 1.51997 * 114.66674 * 158.10287 * 11 10 8 30 30 C 1.52995 * 113.08316 * 332.87946 * 29 11 10 31 31 C 1.52993 * 113.74023 * 202.26596 * 29 11 10 32 32 H 1.08996 * 109.47487 * 269.97814 * 1 2 3 33 33 H 1.09004 * 109.46836 * 29.97546 * 1 2 3 34 34 H 1.09000 * 109.47082 * 149.96926 * 1 2 3 35 35 H 1.08003 * 125.89912 * 179.97438 * 4 3 2 36 36 H 1.08000 * 126.04139 * 180.23221 * 5 4 3 37 37 H 1.09003 * 109.46733 * 145.00313 * 7 6 2 38 38 H 1.08998 * 109.47266 * 25.00059 * 7 6 2 39 39 H 0.96991 * 119.99739 * 0.02562 * 10 8 7 40 40 H 1.08994 * 109.48283 * 266.61800 * 15 13 11 41 41 H 1.08999 * 109.48101 * 26.64921 * 15 13 11 42 42 H 1.09001 * 109.55901 * 55.19110 * 16 15 13 43 43 H 1.09001 * 109.56287 * 175.40746 * 16 15 13 44 44 H 1.08998 * 108.45851 * 297.48625 * 17 16 15 45 45 H 1.09000 * 109.97809 * 177.97300 * 17 16 15 46 46 H 0.97003 * 119.99920 * 5.10570 * 22 21 19 47 47 H 1.09001 * 109.47350 * 157.52200 * 30 29 11 48 48 H 1.08998 * 109.47194 * 277.51633 * 30 29 11 49 49 H 1.08998 * 109.47745 * 37.52159 * 30 29 11 50 50 H 1.09005 * 109.47619 * 286.66265 * 31 29 11 51 51 H 1.09006 * 109.47206 * 46.66217 * 31 29 11 52 52 H 1.08998 * 109.47264 * 166.65880 * 31 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5346 0.7320 -0.0006 5 6 3.5436 -0.6666 0.0041 6 6 2.2588 -1.0912 -0.0005 7 6 1.7972 -2.5258 0.0001 8 6 1.7624 -3.0418 1.4156 9 8 2.0806 -2.3158 2.3336 10 7 1.3766 -4.3095 1.6615 11 6 1.3422 -4.8109 3.0377 12 1 1.1876 -4.0209 3.7725 13 6 2.5119 -5.7543 3.3811 14 1 3.4117 -5.5856 2.7894 15 6 2.7800 -5.8179 4.8867 16 6 3.2627 -7.2216 5.2585 17 6 2.1384 -8.2129 4.9949 18 7 1.7179 -8.1405 3.5998 19 6 1.3901 -9.3033 2.9552 20 1 1.4685 -9.3653 1.8798 21 6 0.9571 -10.4025 3.6840 22 7 1.1130 -11.6163 3.1994 23 14 0.1531 -10.1592 5.3525 24 1 1.1984 -10.1364 6.4070 25 1 -0.7905 -11.2754 5.6148 26 1 -0.5877 -8.8721 5.3619 27 6 1.6254 -6.8925 2.8655 28 1 1.7098 -7.0398 1.7888 29 6 0.4327 -6.0094 3.2536 30 6 -0.7267 -6.0698 2.2573 31 6 -0.0173 -6.1875 4.7050 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3633 -0.8897 -0.5143 35 1 4.4054 1.3709 -0.0011 36 1 4.4210 -1.2964 0.0084 37 1 2.4868 -3.1296 -0.5898 38 1 0.7990 -2.5865 -0.4334 39 1 1.1218 -4.8899 0.9273 40 1 3.5456 -5.0885 5.1508 41 1 1.8616 -5.5936 5.4293 42 1 4.1319 -7.4806 4.6539 43 1 3.5320 -7.2472 6.3144 44 1 1.2971 -7.9602 5.6402 45 1 2.4741 -9.2253 5.2197 46 1 1.5960 -11.7486 2.3686 47 1 -1.0914 -7.0945 2.1857 48 1 -1.5330 -5.4204 2.5982 49 1 -0.3821 -5.7377 1.2780 50 1 0.8171 -6.5567 5.3015 51 1 -0.3516 -5.2290 5.1020 52 1 -0.8379 -6.9037 4.7457 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087285220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:54 Heat of formation + Delta-G solvation = 86.399533 kcal Electronic energy + Delta-G solvation = -32203.032756 eV Core-core repulsion = 28205.651203 eV Total energy + Delta-G solvation = -3997.381553 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.63130 -42.17912 -40.12283 -37.23348 -34.99931 -34.42803 -34.08743 -33.08889 -32.73869 -31.47536 -28.86126 -28.34930 -27.58280 -26.94027 -26.20995 -23.88361 -23.10101 -22.12870 -21.95543 -21.05363 -20.58614 -19.44302 -19.14480 -18.19134 -17.79661 -17.23720 -16.69202 -16.46164 -16.28003 -15.98389 -15.81370 -15.33356 -15.25451 -15.05400 -14.79000 -14.63004 -14.49632 -14.23944 -13.84211 -13.77353 -13.71169 -13.50280 -13.47905 -13.27520 -13.23192 -12.94765 -12.89362 -12.77132 -12.38792 -12.20988 -11.84348 -11.73985 -11.62151 -11.57219 -11.30029 -11.16845 -11.02762 -10.98129 -10.81729 -10.39773 -10.22868 -9.89529 -9.45417 -8.83567 -8.51295 -5.41934 0.83231 1.46192 1.57310 1.58427 1.65049 1.74841 1.84974 2.26059 2.60088 3.10791 3.42851 3.44303 3.55053 3.62502 3.71914 3.84152 3.91683 3.93833 4.05994 4.15066 4.30240 4.33563 4.37417 4.38258 4.41182 4.50714 4.59567 4.64718 4.66164 4.74049 4.77410 4.79281 4.81589 4.86214 4.89520 4.96333 5.03463 5.06474 5.16037 5.19382 5.20168 5.23079 5.34814 5.37951 5.49061 5.65327 5.68504 5.73975 5.87167 6.09315 6.34154 6.55103 6.74179 6.98945 7.23810 7.74064 8.10150 8.91403 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002702 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.622321 B =10358.494426 C =10607.956040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.375 5.375 3 N -0.335 5.335 4 C 0.038 3.962 5 C -0.277 4.277 6 C 0.097 3.903 7 C -0.074 4.074 8 C 0.520 3.480 9 O -0.573 6.573 10 N -0.697 5.697 11 C 0.148 3.852 12 H 0.090 0.910 13 C -0.126 4.126 14 H 0.069 0.931 15 C -0.109 4.109 16 C -0.126 4.126 17 C 0.121 3.879 18 N -0.589 5.589 19 C -0.327 4.327 20 H 0.036 0.964 21 C -0.061 4.061 22 N -0.959 5.959 23 Si 1.080 2.920 24 H -0.276 1.276 25 H -0.318 1.318 26 H -0.253 1.253 27 C 0.173 3.827 28 H 0.068 0.932 29 C -0.111 4.111 30 C -0.126 4.126 31 C -0.146 4.146 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.205 0.795 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.413 0.587 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.035 0.965 45 H 0.041 0.959 46 H 0.250 0.750 47 H 0.037 0.963 48 H 0.060 0.940 49 H 0.069 0.931 50 H 0.084 0.916 51 H 0.066 0.934 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 21.314 -5.735 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.158 5.158 3 N -0.157 5.157 4 C -0.147 4.147 5 C -0.307 4.307 6 C -0.031 4.031 7 C -0.115 4.115 8 C 0.307 3.693 9 O -0.452 6.452 10 N -0.348 5.348 11 C 0.042 3.958 12 H 0.108 0.892 13 C -0.147 4.147 14 H 0.088 0.912 15 C -0.146 4.146 16 C -0.164 4.164 17 C -0.003 4.003 18 N -0.309 5.309 19 C -0.457 4.457 20 H 0.054 0.946 21 C -0.256 4.256 22 N -0.601 5.601 23 Si 0.907 3.093 24 H -0.203 1.203 25 H -0.248 1.248 26 H -0.178 1.178 27 C 0.064 3.936 28 H 0.086 0.914 29 C -0.115 4.115 30 C -0.183 4.183 31 C -0.202 4.202 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.222 0.778 36 H 0.173 0.827 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.252 0.748 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.103 0.897 51 H 0.084 0.916 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.965 22.095 -3.874 22.518 hybrid contribution 1.286 -0.903 -1.795 2.386 sum -0.679 21.193 -5.669 21.948 Atomic orbital electron populations 1.22143 0.72940 1.06204 1.03881 1.48702 1.07529 1.03060 1.56492 1.77262 1.02811 1.09184 1.26428 1.24259 0.95565 0.95688 0.99158 1.21505 0.96979 0.95393 1.16790 1.20648 0.91499 0.89963 1.01025 1.20384 1.07403 0.89574 0.94158 1.20776 0.75851 0.81226 0.91457 1.90746 1.49067 1.57652 1.47722 1.45637 1.67599 1.12891 1.08717 1.21452 0.95969 0.94367 0.84037 0.89194 1.23226 0.97562 0.96375 0.97536 0.91217 1.21612 1.02586 0.96413 0.93980 1.21640 0.97812 0.95191 1.01790 1.21139 0.95861 0.98123 0.85185 1.43539 1.75733 1.02594 1.09029 1.20115 1.42397 0.91208 0.91997 0.94600 1.27059 0.99645 0.91635 1.07272 1.70982 1.44319 1.22522 1.22289 0.83746 0.76583 0.75317 0.73613 1.20292 1.24773 1.17806 1.21533 0.93743 0.83625 0.94655 0.91373 1.22509 0.96285 0.95627 0.97048 1.21599 0.97378 1.00894 0.98466 1.22189 1.02110 1.01159 0.94785 0.91127 0.88377 0.86668 0.77806 0.82668 0.83322 0.84337 0.74842 0.91008 0.89379 0.92825 0.89575 0.94787 0.94040 0.94133 0.94424 0.92090 0.91215 0.89748 0.91561 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 11.27 127.77 1.44 2.59 16 2 N -0.37 -7.94 4.01 -356.03 -1.43 -9.37 16 3 N -0.33 -8.40 12.58 -57.02 -0.72 -9.12 16 4 C 0.04 0.81 12.03 85.24 1.02 1.84 16 5 C -0.28 -5.87 10.72 21.99 0.24 -5.63 16 6 C 0.10 1.94 5.42 41.41 0.22 2.16 16 7 C -0.07 -0.97 5.99 29.10 0.17 -0.79 16 8 C 0.52 10.89 7.82 87.66 0.69 11.57 16 9 O -0.57 -17.59 15.67 -3.05 -0.05 -17.64 16 10 N -0.70 -13.83 4.73 -442.28 -2.09 -15.92 16 11 C 0.15 3.80 3.25 45.04 0.15 3.95 16 12 H 0.09 2.51 7.37 -2.39 -0.02 2.50 16 13 C -0.13 -3.69 4.08 -10.36 -0.04 -3.73 16 14 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 15 C -0.11 -3.04 5.19 30.62 0.16 -2.88 16 16 C -0.13 -3.97 6.02 30.34 0.18 -3.79 16 17 C 0.12 4.84 3.33 86.23 0.29 5.13 16 18 N -0.59 -25.52 2.48 -683.26 -1.69 -27.21 16 19 C -0.33 -17.50 9.74 84.04 0.82 -16.68 16 20 H 0.04 2.10 8.02 -2.91 -0.02 2.08 16 21 C -0.06 -3.46 5.04 84.86 0.43 -3.03 16 22 N -0.96 -59.69 13.70 21.65 0.30 -59.39 16 23 Si 1.08 51.06 24.47 68.60 1.68 52.74 16 24 H -0.28 -12.11 6.54 99.48 0.65 -11.46 16 25 H -0.32 -15.86 7.11 99.48 0.71 -15.15 16 26 H -0.25 -10.75 5.69 99.48 0.57 -10.19 16 27 C 0.17 5.99 3.46 45.45 0.16 6.15 16 28 H 0.07 2.43 7.92 -2.39 -0.02 2.41 16 29 C -0.11 -3.22 1.30 -52.43 -0.07 -3.28 16 30 C -0.13 -3.28 8.95 71.98 0.64 -2.63 16 31 C -0.15 -4.41 7.22 71.98 0.52 -3.89 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.12 0.72 6.98 -2.39 -0.02 0.70 16 35 H 0.21 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 37 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.14 0.85 6.95 -2.39 -0.02 0.84 16 39 H 0.41 6.37 6.83 -92.72 -0.63 5.73 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.09 2.37 4.59 -2.39 -0.01 2.36 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.03 1.33 3.73 -2.39 -0.01 1.32 16 45 H 0.04 1.89 5.54 -2.39 -0.01 1.88 16 46 H 0.25 15.63 8.73 -92.71 -0.81 14.82 16 47 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.07 1.41 5.87 -2.39 -0.01 1.39 16 50 H 0.08 2.67 1.84 -2.38 0.00 2.67 16 51 H 0.07 1.67 8.10 -2.38 -0.02 1.65 16 52 H 0.04 1.49 6.84 -2.39 -0.02 1.47 16 Total: -1.00 -77.61 386.50 3.09 -74.51 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.08 Total: 24.36 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 7.02 Total: -12.95 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -5.63 Total: -121.02 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.05 Total: -17.64 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 1.68 Total: 52.74 kcal Total: -77.61 3.09 -74.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087285220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.914 kcal (2) G-P(sol) polarization free energy of solvation -77.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds