Wall clock time and date at job start Wed Apr 1 2020 04:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33320 * 126.10619 * 2 1 4 4 C 1.30848 * 109.68754 * 179.97438 * 3 2 1 5 5 N 1.34501 * 109.16277 * 0.25838 * 4 3 2 6 6 C 1.46498 * 126.47393 * 179.73522 * 5 4 3 7 7 C 1.36655 * 126.10737 * 179.97438 * 2 1 3 8 8 C 1.46762 * 126.84629 * 359.97438 * 7 2 1 9 9 O 1.21687 * 119.99868 * 81.32732 * 8 7 2 10 10 N 1.34776 * 120.00464 * 261.32618 * 8 7 2 11 11 C 1.46498 * 119.99941 * 185.05077 * 10 8 7 12 12 H 1.08999 * 112.87004 * 26.76659 * 11 10 8 13 13 C 1.54148 * 113.63855 * 255.49370 * 11 10 8 14 14 H 1.08996 * 114.24895 * 26.68796 * 13 11 10 15 15 C 1.53062 * 111.68876 * 156.95328 * 13 11 10 16 16 C 1.51983 * 109.98281 * 144.76959 * 15 13 11 17 17 C 1.52937 * 109.75656 * 296.97267 * 16 15 13 18 18 N 1.45889 * 109.89180 * 56.74248 * 17 16 15 19 19 C 1.36936 * 118.48839 * 140.65255 * 18 17 16 20 20 H 1.07991 * 120.00608 * 207.83215 * 19 18 17 21 21 C 1.38823 * 119.99296 * 27.83712 * 19 18 17 22 22 N 1.31617 * 120.00085 * 11.92968 * 21 19 18 23 23 Si 1.86799 * 119.99714 * 191.93122 * 21 19 18 24 24 H 1.48511 * 109.47020 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47150 * 119.99630 * 23 21 19 26 26 H 1.48493 * 109.47088 * 240.00058 * 23 21 19 27 27 C 1.45096 * 123.03138 * 320.64123 * 18 17 16 28 28 H 1.08995 * 112.25704 * 157.11253 * 27 18 17 29 29 C 1.53384 * 113.73941 * 286.75162 * 27 18 17 30 30 C 1.53007 * 113.68710 * 28.73478 * 29 27 18 31 31 C 1.53000 * 113.69093 * 257.59907 * 29 27 18 32 32 H 1.08997 * 109.47153 * 90.02609 * 1 2 3 33 33 H 1.08999 * 109.46894 * 210.02664 * 1 2 3 34 34 H 1.09000 * 109.46952 * 330.02970 * 1 2 3 35 35 H 1.07999 * 125.42065 * 180.02562 * 4 3 2 36 36 H 1.09005 * 109.46869 * 95.15515 * 6 5 4 37 37 H 1.08998 * 109.47570 * 215.15845 * 6 5 4 38 38 H 1.09000 * 109.47208 * 335.16029 * 6 5 4 39 39 H 0.97001 * 119.99840 * 5.05200 * 10 8 7 40 40 H 1.09005 * 109.47827 * 266.38094 * 15 13 11 41 41 H 1.08991 * 109.48262 * 26.41753 * 15 13 11 42 42 H 1.08999 * 109.63548 * 176.57916 * 16 15 13 43 43 H 1.09003 * 108.74837 * 56.81309 * 16 15 13 44 44 H 1.08999 * 109.40144 * 296.61220 * 17 16 15 45 45 H 1.09001 * 109.33352 * 176.82904 * 17 16 15 46 46 H 0.97002 * 119.99751 * 180.02562 * 22 21 19 47 47 H 1.09006 * 109.46856 * 146.59285 * 30 29 27 48 48 H 1.08996 * 109.46763 * 266.58415 * 30 29 27 49 49 H 1.08999 * 109.47084 * 26.59310 * 30 29 27 50 50 H 1.09006 * 109.46965 * 303.46604 * 31 29 27 51 51 H 1.08998 * 109.46898 * 63.46509 * 31 29 27 52 52 H 1.08995 * 109.47338 * 183.47171 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7073 0.0006 5 7 3.6122 -0.6362 -0.0048 6 6 4.8305 -1.4496 -0.0116 7 6 2.3123 -1.1041 0.0005 8 6 1.8821 -2.5072 0.0016 9 8 1.5514 -3.0430 -1.0397 10 7 1.8532 -3.2023 1.1559 11 6 1.5309 -4.6314 1.1425 12 1 1.7848 -5.1140 0.1988 13 6 0.1048 -4.9480 1.6347 14 1 -0.6083 -4.1359 1.4929 15 6 -0.3933 -6.2922 1.0983 16 6 -1.2604 -6.9783 2.1410 17 6 -0.4264 -7.2865 3.3854 18 7 0.1685 -6.0582 3.9009 19 6 0.2235 -5.8783 5.2573 20 1 0.2196 -4.8806 5.6704 21 6 0.2845 -6.9788 6.1013 22 7 0.5252 -8.1747 5.6071 23 14 0.0248 -6.7623 7.9384 24 1 -0.2267 -5.3295 8.2373 25 1 -1.1426 -7.5712 8.3721 26 1 1.2378 -7.2137 8.6664 27 6 0.7047 -5.0183 3.0427 28 1 0.7344 -4.0482 3.5388 29 6 2.0380 -5.3898 2.3817 30 6 2.2133 -6.8926 2.1534 31 6 3.2547 -4.7406 3.0444 32 1 -0.3633 -0.0005 -1.0276 33 1 -0.3633 -0.8897 0.5142 34 1 -0.3633 0.8903 0.5134 35 1 4.3970 1.3746 0.0011 36 1 5.0845 -1.7321 1.0102 37 1 4.6645 -2.3478 -0.6063 38 1 5.6493 -0.8741 -0.4435 39 1 2.0458 -2.7564 1.9956 40 1 -0.9567 -6.1306 0.1793 41 1 0.4589 -6.9401 0.8933 42 1 -1.6612 -7.9055 1.7314 43 1 -2.0811 -6.3123 2.4074 44 1 0.3642 -7.9906 3.1261 45 1 -1.0672 -7.7268 4.1493 46 1 0.5674 -8.9437 6.1969 47 1 2.7870 -7.0570 1.2412 48 1 2.7436 -7.3291 2.9997 49 1 1.2343 -7.3620 2.0566 50 1 3.1304 -3.6577 3.0507 51 1 3.3462 -5.1017 4.0688 52 1 4.1541 -4.9998 2.4860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087290892.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:35 Heat of formation + Delta-G solvation = 87.211731 kcal Electronic energy + Delta-G solvation = -32700.102792 eV Core-core repulsion = 28702.756459 eV Total energy + Delta-G solvation = -3997.346333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.37367 -40.91952 -38.72477 -35.37904 -34.67905 -33.31216 -32.70078 -31.36980 -30.37924 -29.91828 -28.57603 -26.90504 -26.36610 -25.45079 -24.80827 -22.80150 -22.48596 -21.12377 -20.84391 -19.92171 -19.30117 -17.98988 -17.38380 -16.84464 -16.46542 -16.01651 -15.69540 -15.22281 -14.80109 -14.65519 -14.26473 -14.05707 -13.76829 -13.67470 -13.62432 -13.25237 -13.13829 -12.87721 -12.72541 -12.53352 -12.48895 -12.26391 -12.19038 -12.13390 -11.67154 -11.38254 -11.18483 -11.03929 -10.88771 -10.80605 -10.59118 -10.51676 -10.20133 -10.03982 -9.99366 -9.79820 -9.71843 -9.57566 -9.39715 -9.12378 -8.69266 -8.55501 -8.37379 -6.64779 -5.80123 -3.26182 1.52459 2.07749 2.74157 2.82975 3.27257 3.33289 3.42142 3.43054 4.30608 4.37322 4.45823 4.56048 4.77728 4.86706 4.94479 5.03055 5.04525 5.13705 5.28192 5.33623 5.46148 5.58801 5.63861 5.67564 5.72145 5.78452 5.83219 5.88834 5.93697 5.97547 6.06875 6.13180 6.23318 6.27812 6.40644 6.42075 6.43109 6.51506 6.53015 6.61397 6.72469 6.75954 6.80847 6.85900 6.94676 7.08032 7.17450 7.44333 7.51756 7.73388 7.78727 7.82342 8.13904 8.44167 9.23285 9.87717 10.31765 11.25518 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.003232 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.680060 B = 8662.041946 C = 9069.517933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.060 3.940 3 N -0.493 5.493 4 C 0.198 3.802 5 N -0.439 5.439 6 C 0.068 3.932 7 C -0.078 4.078 8 C 0.596 3.404 9 O -0.525 6.525 10 N -0.692 5.692 11 C 0.122 3.878 12 H 0.094 0.906 13 C -0.126 4.126 14 H 0.070 0.930 15 C -0.106 4.106 16 C -0.145 4.145 17 C 0.178 3.822 18 N -0.570 5.570 19 C -0.261 4.261 20 H 0.064 0.936 21 C 0.009 3.991 22 N -0.902 5.902 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.188 3.812 28 H 0.070 0.930 29 C -0.111 4.111 30 C -0.134 4.134 31 C -0.125 4.125 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.211 0.789 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.402 0.598 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.252 0.748 47 H 0.031 0.969 48 H 0.062 0.938 49 H 0.096 0.904 50 H 0.038 0.962 51 H 0.066 0.934 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.118 10.927 -10.432 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 N -0.212 5.212 4 C -0.084 4.084 5 N -0.123 5.123 6 C -0.075 4.075 7 C -0.194 4.194 8 C 0.379 3.621 9 O -0.399 6.399 10 N -0.343 5.343 11 C 0.017 3.983 12 H 0.112 0.888 13 C -0.148 4.148 14 H 0.088 0.912 15 C -0.144 4.144 16 C -0.184 4.184 17 C 0.053 3.947 18 N -0.288 5.288 19 C -0.390 4.390 20 H 0.082 0.918 21 C -0.190 4.190 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.077 3.923 28 H 0.088 0.912 29 C -0.115 4.115 30 C -0.191 4.191 31 C -0.182 4.182 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.227 0.773 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.239 0.761 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.050 0.950 48 H 0.081 0.919 49 H 0.115 0.885 50 H 0.057 0.943 51 H 0.085 0.915 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.763 11.031 -11.080 17.035 hybrid contribution 0.619 -0.400 1.406 1.587 sum 7.382 10.631 -9.674 16.158 Atomic orbital electron populations 1.20142 0.86995 1.03099 1.02896 1.20862 0.96460 0.86757 1.03177 1.70008 1.00370 1.30143 1.20636 1.24985 0.97224 0.81619 1.04540 1.45291 1.05890 1.07739 1.53332 1.22179 0.84522 0.96425 1.04337 1.20783 0.84743 0.95208 1.18650 1.16863 0.78060 0.83064 0.84123 1.90844 1.47846 1.69201 1.32057 1.45860 1.69399 1.10242 1.08760 1.22428 0.97152 0.79076 0.99650 0.88817 1.23182 0.95146 0.97782 0.98648 0.91189 1.21325 1.00308 0.95196 0.97544 1.21895 0.99178 0.99030 0.98258 1.20683 0.94570 0.87591 0.91806 1.43229 1.65952 1.17501 1.02073 1.19262 1.45493 0.92419 0.81871 0.91848 1.25018 1.00139 0.96046 0.97798 1.70036 1.52356 0.98478 1.33759 0.86270 0.77402 0.77548 0.85805 1.20382 1.21636 1.21799 1.21271 0.89713 0.92753 0.88537 0.91208 1.23012 0.98320 0.95808 0.94357 1.22031 1.03944 0.93367 0.99708 1.21570 0.96794 0.98424 1.01430 0.90723 0.91086 0.90530 0.77303 0.89771 0.89522 0.88719 0.76095 0.93195 0.90731 0.92840 0.93061 0.94145 0.91120 0.93754 0.94988 0.91898 0.88543 0.94273 0.91530 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.24 36.01 0.37 -0.50 16 2 C 0.06 0.82 7.15 -82.52 -0.59 0.23 16 3 N -0.49 -6.44 11.20 -10.65 -0.12 -6.56 16 4 C 0.20 1.95 12.52 -90.58 -1.13 0.82 16 5 N -0.44 -4.50 3.17 -121.98 -0.39 -4.89 16 6 C 0.07 0.45 10.98 59.85 0.66 1.11 16 7 C -0.08 -1.03 6.66 -82.15 -0.55 -1.57 16 8 C 0.60 8.77 6.91 -12.82 -0.09 8.68 16 9 O -0.52 -9.51 16.79 5.20 0.09 -9.42 16 10 N -0.69 -9.50 4.76 -54.07 -0.26 -9.76 16 11 C 0.12 1.89 3.26 -66.88 -0.22 1.67 16 12 H 0.09 1.55 7.48 -51.93 -0.39 1.16 16 13 C -0.13 -2.15 4.11 -89.88 -0.37 -2.52 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.11 -1.78 5.18 -27.22 -0.14 -1.92 16 16 C -0.14 -2.66 5.95 -27.28 -0.16 -2.82 16 17 C 0.18 3.96 3.97 -4.40 -0.02 3.94 16 18 N -0.57 -12.95 2.64 -166.87 -0.44 -13.39 16 19 C -0.26 -6.65 9.47 -15.06 -0.14 -6.80 16 20 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 21 C 0.01 0.23 4.96 -17.43 -0.09 0.14 16 22 N -0.90 -24.43 10.88 55.49 0.60 -23.82 16 23 Si 0.90 20.91 29.57 -169.99 -5.03 15.88 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.19 3.57 3.43 -68.38 -0.23 3.33 16 28 H 0.07 1.34 7.95 -51.93 -0.41 0.93 16 29 C -0.11 -1.85 1.33 -153.85 -0.20 -2.06 16 30 C -0.13 -2.40 7.27 37.16 0.27 -2.13 16 31 C -0.12 -1.90 8.91 37.16 0.33 -1.57 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.84 7.94 -51.93 -0.41 0.43 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.67 8.05 -51.93 -0.42 0.26 16 38 H 0.09 0.34 8.13 -51.93 -0.42 -0.08 16 39 H 0.40 5.10 6.76 -40.82 -0.28 4.82 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.24 4.74 -51.93 -0.25 1.00 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.04 0.96 5.51 -51.93 -0.29 0.67 16 45 H 0.07 1.79 6.53 -51.93 -0.34 1.45 16 46 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 49 H 0.10 1.83 1.89 -51.93 -0.10 1.73 16 50 H 0.04 0.51 5.96 -51.93 -0.31 0.20 16 51 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 52 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 397.27 15.07 5.99 5.99 Total: -1.00 -31.04 397.27 -10.09 -41.12 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -8.22 Total: 6.79 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.31 Total: -1.95 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.60 Total: -58.41 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.04 -10.09 -41.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087290892.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.336 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds