Wall clock time and date at job start Wed Apr 1 2020 04:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33320 * 126.10619 * 2 1 4 4 C 1.30848 * 109.68754 * 179.97438 * 3 2 1 5 5 N 1.34501 * 109.16277 * 0.25838 * 4 3 2 6 6 C 1.46498 * 126.47393 * 179.73522 * 5 4 3 7 7 C 1.36655 * 126.10737 * 179.97438 * 2 1 3 8 8 C 1.46762 * 126.84629 * 359.97438 * 7 2 1 9 9 O 1.21687 * 119.99868 * 81.32732 * 8 7 2 10 10 N 1.34776 * 120.00464 * 261.32618 * 8 7 2 11 11 C 1.46498 * 119.99941 * 185.05077 * 10 8 7 12 12 H 1.08999 * 112.87004 * 26.76659 * 11 10 8 13 13 C 1.54148 * 113.63855 * 255.49370 * 11 10 8 14 14 H 1.08996 * 114.24895 * 26.68796 * 13 11 10 15 15 C 1.53062 * 111.68876 * 156.95328 * 13 11 10 16 16 C 1.51983 * 109.98281 * 144.76959 * 15 13 11 17 17 C 1.52937 * 109.75656 * 296.97267 * 16 15 13 18 18 N 1.45889 * 109.89180 * 56.74248 * 17 16 15 19 19 C 1.36936 * 118.48839 * 140.65255 * 18 17 16 20 20 H 1.07991 * 120.00608 * 207.83215 * 19 18 17 21 21 C 1.38823 * 119.99296 * 27.83712 * 19 18 17 22 22 N 1.31617 * 120.00085 * 11.92968 * 21 19 18 23 23 Si 1.86799 * 119.99714 * 191.93122 * 21 19 18 24 24 H 1.48511 * 109.47020 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47150 * 119.99630 * 23 21 19 26 26 H 1.48493 * 109.47088 * 240.00058 * 23 21 19 27 27 C 1.45096 * 123.03138 * 320.64123 * 18 17 16 28 28 H 1.08995 * 112.25704 * 157.11253 * 27 18 17 29 29 C 1.53384 * 113.73941 * 286.75162 * 27 18 17 30 30 C 1.53007 * 113.68710 * 28.73478 * 29 27 18 31 31 C 1.53000 * 113.69093 * 257.59907 * 29 27 18 32 32 H 1.08997 * 109.47153 * 90.02609 * 1 2 3 33 33 H 1.08999 * 109.46894 * 210.02664 * 1 2 3 34 34 H 1.09000 * 109.46952 * 330.02970 * 1 2 3 35 35 H 1.07999 * 125.42065 * 180.02562 * 4 3 2 36 36 H 1.09005 * 109.46869 * 95.15515 * 6 5 4 37 37 H 1.08998 * 109.47570 * 215.15845 * 6 5 4 38 38 H 1.09000 * 109.47208 * 335.16029 * 6 5 4 39 39 H 0.97001 * 119.99840 * 5.05200 * 10 8 7 40 40 H 1.09005 * 109.47827 * 266.38094 * 15 13 11 41 41 H 1.08991 * 109.48262 * 26.41753 * 15 13 11 42 42 H 1.08999 * 109.63548 * 176.57916 * 16 15 13 43 43 H 1.09003 * 108.74837 * 56.81309 * 16 15 13 44 44 H 1.08999 * 109.40144 * 296.61220 * 17 16 15 45 45 H 1.09001 * 109.33352 * 176.82904 * 17 16 15 46 46 H 0.97002 * 119.99751 * 180.02562 * 22 21 19 47 47 H 1.09006 * 109.46856 * 146.59285 * 30 29 27 48 48 H 1.08996 * 109.46763 * 266.58415 * 30 29 27 49 49 H 1.08999 * 109.47084 * 26.59310 * 30 29 27 50 50 H 1.09006 * 109.46965 * 303.46604 * 31 29 27 51 51 H 1.08998 * 109.46898 * 63.46509 * 31 29 27 52 52 H 1.08995 * 109.47338 * 183.47171 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7073 0.0006 5 7 3.6122 -0.6362 -0.0048 6 6 4.8305 -1.4496 -0.0116 7 6 2.3123 -1.1041 0.0005 8 6 1.8821 -2.5072 0.0016 9 8 1.5514 -3.0430 -1.0397 10 7 1.8532 -3.2023 1.1559 11 6 1.5309 -4.6314 1.1425 12 1 1.7848 -5.1140 0.1988 13 6 0.1048 -4.9480 1.6347 14 1 -0.6083 -4.1359 1.4929 15 6 -0.3933 -6.2922 1.0983 16 6 -1.2604 -6.9783 2.1410 17 6 -0.4264 -7.2865 3.3854 18 7 0.1685 -6.0582 3.9009 19 6 0.2235 -5.8783 5.2573 20 1 0.2196 -4.8806 5.6704 21 6 0.2845 -6.9788 6.1013 22 7 0.5252 -8.1747 5.6071 23 14 0.0248 -6.7623 7.9384 24 1 -0.2267 -5.3295 8.2373 25 1 -1.1426 -7.5712 8.3721 26 1 1.2378 -7.2137 8.6664 27 6 0.7047 -5.0183 3.0427 28 1 0.7344 -4.0482 3.5388 29 6 2.0380 -5.3898 2.3817 30 6 2.2133 -6.8926 2.1534 31 6 3.2547 -4.7406 3.0444 32 1 -0.3633 -0.0005 -1.0276 33 1 -0.3633 -0.8897 0.5142 34 1 -0.3633 0.8903 0.5134 35 1 4.3970 1.3746 0.0011 36 1 5.0845 -1.7321 1.0102 37 1 4.6645 -2.3478 -0.6063 38 1 5.6493 -0.8741 -0.4435 39 1 2.0458 -2.7564 1.9956 40 1 -0.9567 -6.1306 0.1793 41 1 0.4589 -6.9401 0.8933 42 1 -1.6612 -7.9055 1.7314 43 1 -2.0811 -6.3123 2.4074 44 1 0.3642 -7.9906 3.1261 45 1 -1.0672 -7.7268 4.1493 46 1 0.5674 -8.9437 6.1969 47 1 2.7870 -7.0570 1.2412 48 1 2.7436 -7.3291 2.9997 49 1 1.2343 -7.3620 2.0566 50 1 3.1304 -3.6577 3.0507 51 1 3.3462 -5.1017 4.0688 52 1 4.1541 -4.9998 2.4860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087290892.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:33 Heat of formation + Delta-G solvation = 70.247195 kcal Electronic energy + Delta-G solvation = -32700.838430 eV Core-core repulsion = 28702.756459 eV Total energy + Delta-G solvation = -3998.081971 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.23377 -42.31585 -39.98322 -36.97285 -35.44199 -34.88777 -34.08513 -32.42162 -32.10486 -31.34678 -29.39737 -28.28230 -27.25729 -27.08007 -26.21407 -24.13734 -23.90136 -22.59025 -21.71024 -21.00111 -20.71975 -19.24237 -18.71429 -18.51844 -17.52914 -17.06320 -16.74593 -16.47968 -16.30072 -16.01782 -15.59103 -15.54336 -15.14777 -14.86686 -14.63041 -14.47166 -14.21306 -14.08785 -13.96025 -13.74083 -13.58936 -13.51992 -13.24514 -13.16369 -13.12931 -12.92658 -12.83562 -12.71400 -12.59441 -12.44783 -12.05475 -12.00124 -11.67573 -11.59816 -11.34693 -11.14387 -10.97672 -10.95044 -10.65652 -10.59866 -10.32444 -9.96402 -9.45676 -8.50808 -7.77799 -5.24994 0.64322 1.11930 1.45484 1.49421 1.56993 1.75245 1.97588 2.24398 2.53982 3.34890 3.49991 3.51964 3.64190 3.69060 3.76731 3.84810 3.96510 4.05005 4.13330 4.27840 4.29020 4.34384 4.40300 4.46969 4.58201 4.63737 4.68034 4.73035 4.73956 4.80587 4.83318 4.88838 4.95055 4.96622 5.02087 5.10176 5.13446 5.15315 5.17704 5.24642 5.31655 5.39203 5.49390 5.52589 5.59777 5.64659 5.70185 5.75756 6.02229 6.15252 6.36306 6.46872 6.93830 6.99930 7.27180 8.03924 8.40191 9.24641 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.003232 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.680060 B = 8662.041946 C = 9069.517933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.045 3.955 3 N -0.527 5.527 4 C 0.216 3.784 5 N -0.437 5.437 6 C 0.061 3.939 7 C -0.102 4.102 8 C 0.607 3.393 9 O -0.561 6.561 10 N -0.682 5.682 11 C 0.144 3.856 12 H 0.093 0.907 13 C -0.123 4.123 14 H 0.070 0.930 15 C -0.102 4.102 16 C -0.135 4.135 17 C 0.188 3.812 18 N -0.582 5.582 19 C -0.263 4.263 20 H 0.060 0.940 21 C -0.039 4.039 22 N -0.926 5.926 23 Si 0.954 3.046 24 H -0.271 1.271 25 H -0.295 1.295 26 H -0.295 1.295 27 C 0.173 3.827 28 H 0.067 0.933 29 C -0.104 4.104 30 C -0.129 4.129 31 C -0.119 4.119 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.256 0.744 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.131 0.869 39 H 0.409 0.591 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.025 0.975 45 H 0.032 0.968 46 H 0.246 0.754 47 H 0.056 0.944 48 H 0.032 0.968 49 H 0.085 0.915 50 H 0.060 0.940 51 H 0.038 0.962 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.664 12.900 -11.603 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 N -0.247 5.247 4 C -0.066 4.066 5 N -0.119 5.119 6 C -0.080 4.080 7 C -0.218 4.218 8 C 0.392 3.608 9 O -0.438 6.438 10 N -0.332 5.332 11 C 0.038 3.962 12 H 0.111 0.889 13 C -0.144 4.144 14 H 0.088 0.912 15 C -0.140 4.140 16 C -0.173 4.173 17 C 0.063 3.937 18 N -0.300 5.300 19 C -0.394 4.394 20 H 0.078 0.922 21 C -0.235 4.235 22 N -0.572 5.572 23 Si 0.784 3.216 24 H -0.196 1.196 25 H -0.222 1.222 26 H -0.222 1.222 27 C 0.064 3.936 28 H 0.085 0.915 29 C -0.108 4.108 30 C -0.185 4.185 31 C -0.177 4.177 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.272 0.728 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.149 0.851 39 H 0.247 0.753 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.042 0.958 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.075 0.925 48 H 0.051 0.949 49 H 0.103 0.897 50 H 0.079 0.921 51 H 0.057 0.943 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.331 13.031 -12.252 19.732 hybrid contribution 0.177 -0.942 1.754 1.998 sum 8.508 12.090 -10.498 18.132 Atomic orbital electron populations 1.20153 0.86760 1.03242 1.02972 1.21128 0.97131 0.87219 1.03290 1.70011 1.01816 1.30394 1.22441 1.25894 0.97514 0.81875 1.01352 1.45502 1.05727 1.08201 1.52492 1.22477 0.83978 0.96276 1.05245 1.20535 0.86411 0.94063 1.20816 1.16969 0.76967 0.83479 0.83426 1.90823 1.49473 1.70224 1.33262 1.45732 1.68980 1.09457 1.09067 1.22082 0.95550 0.79909 0.98670 0.88869 1.23156 0.96098 0.98106 0.97085 0.91152 1.21301 1.00322 0.94771 0.97563 1.21750 0.98543 1.00042 0.96995 1.20422 0.93825 0.87214 0.92197 1.43353 1.66787 1.18197 1.01701 1.19497 1.44205 0.92184 0.83517 0.92201 1.25598 1.00899 0.96009 1.00947 1.70177 1.53825 0.98799 1.34406 0.85404 0.76649 0.77524 0.82023 1.19591 1.22192 1.22179 1.21503 0.91516 0.91563 0.89003 0.91514 1.22829 0.97773 0.95551 0.94690 1.21934 1.03261 0.93814 0.99538 1.21506 0.96848 0.99535 0.99766 0.90669 0.91565 0.89722 0.72827 0.88570 0.90809 0.85112 0.75260 0.91192 0.90413 0.91012 0.93619 0.95780 0.94988 0.94444 0.92531 0.94896 0.89654 0.92135 0.94289 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 10.24 71.24 0.73 -0.96 16 2 C 0.05 1.17 7.15 41.96 0.30 1.47 16 3 N -0.53 -12.68 11.20 -187.60 -2.10 -14.78 16 4 C 0.22 3.51 12.52 180.33 2.26 5.77 16 5 N -0.44 -7.66 3.17 -539.83 -1.71 -9.37 16 6 C 0.06 0.60 10.98 127.77 1.40 2.00 16 7 C -0.10 -2.51 6.66 40.01 0.27 -2.25 16 8 C 0.61 16.96 6.91 86.47 0.60 17.55 16 9 O -0.56 -19.65 16.79 -4.31 -0.07 -19.72 16 10 N -0.68 -17.48 4.76 -443.19 -2.11 -19.59 16 11 C 0.14 4.20 3.26 45.67 0.15 4.35 16 12 H 0.09 2.86 7.48 -2.39 -0.02 2.85 16 13 C -0.12 -4.04 4.11 -10.31 -0.04 -4.08 16 14 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 15 C -0.10 -3.27 5.18 30.28 0.16 -3.12 16 16 C -0.13 -4.89 5.95 30.24 0.18 -4.71 16 17 C 0.19 8.59 3.97 86.47 0.34 8.93 16 18 N -0.58 -26.90 2.64 -681.85 -1.80 -28.70 16 19 C -0.26 -13.72 9.47 84.04 0.80 -12.92 16 20 H 0.06 3.10 7.83 -2.92 -0.02 3.08 16 21 C -0.04 -2.06 4.96 84.87 0.42 -1.64 16 22 N -0.93 -51.91 10.88 21.65 0.24 -51.68 16 23 Si 0.95 43.87 29.57 68.60 2.03 45.90 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 C 0.17 6.52 3.43 45.45 0.16 6.67 16 28 H 0.07 2.53 7.95 -2.39 -0.02 2.51 16 29 C -0.10 -3.40 1.33 -51.75 -0.07 -3.47 16 30 C -0.13 -4.56 7.27 71.98 0.52 -4.03 16 31 C -0.12 -3.45 8.91 71.98 0.64 -2.81 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.54 7.94 -2.39 -0.02 1.52 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.26 1.40 8.06 -2.91 -0.02 1.37 16 36 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.07 0.95 8.05 -2.39 -0.02 0.94 16 38 H 0.13 0.33 8.13 -2.39 -0.02 0.31 16 39 H 0.41 9.53 6.76 -92.71 -0.63 8.90 16 40 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.08 2.47 4.74 -2.39 -0.01 2.46 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.02 1.19 5.51 -2.39 -0.01 1.17 16 45 H 0.03 1.68 6.53 -2.39 -0.02 1.67 16 46 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 47 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 48 H 0.03 1.34 8.06 -2.39 -0.02 1.32 16 49 H 0.09 3.24 1.89 -2.39 0.00 3.23 16 50 H 0.06 1.46 5.96 -2.38 -0.01 1.45 16 51 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 52 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -69.50 397.27 3.58 -65.91 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.31 Total: 25.28 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 8.81 Total: 6.75 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -7.49 Total: -124.13 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.07 Total: -19.72 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -69.50 3.58 -65.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087290892.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.161 kcal (2) G-P(sol) polarization free energy of solvation -69.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds