Wall clock time and date at job start Wed Apr 1 2020 04:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33312 * 126.11260 * 2 1 4 4 C 1.30854 * 109.69135 * 180.02562 * 3 2 1 5 5 N 1.34503 * 109.15961 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.47174 * 179.97438 * 5 4 3 7 7 C 1.36663 * 126.10258 * 180.31650 * 2 1 3 8 8 C 1.46774 * 126.84913 * 0.03459 * 7 2 1 9 9 O 1.21681 * 119.99869 * 88.72401 * 8 7 2 10 10 N 1.34776 * 119.99876 * 268.72816 * 8 7 2 11 11 C 1.46493 * 119.99852 * 184.51658 * 10 8 7 12 12 H 1.09006 * 113.22691 * 28.30345 * 11 10 8 13 13 C 1.50010 * 114.12888 * 255.49783 * 11 10 8 14 14 H 1.08999 * 112.51334 * 170.15719 * 13 11 10 15 15 C 1.51202 * 126.16022 * 27.75138 * 13 11 10 16 16 C 1.55145 * 105.67097 * 198.22972 * 15 13 11 17 17 C 1.52501 * 112.59635 * 55.75728 * 16 15 13 18 18 N 1.48412 * 111.86247 * 313.00430 * 17 16 15 19 19 C 1.36933 * 123.16823 * 231.80593 * 18 17 16 20 20 H 1.08001 * 119.99918 * 146.60642 * 19 18 17 21 21 C 1.38809 * 120.00139 * 326.60692 * 19 18 17 22 22 N 1.31621 * 120.00099 * 358.97377 * 21 19 18 23 23 Si 1.86803 * 120.00096 * 178.96822 * 21 19 18 24 24 H 1.48507 * 109.47102 * 60.00238 * 23 21 19 25 25 H 1.48497 * 109.47110 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47250 * 300.00317 * 23 21 19 27 27 C 1.45383 * 113.66180 * 51.83898 * 18 17 16 28 28 H 1.09001 * 112.08545 * 59.75475 * 27 18 17 29 29 C 1.49964 * 126.22497 * 204.16896 * 27 18 17 30 30 C 1.52995 * 114.08540 * 25.66656 * 29 27 18 31 31 C 1.52998 * 114.08106 * 253.24443 * 29 27 18 32 32 H 1.08997 * 109.47256 * 89.97097 * 1 2 3 33 33 H 1.08999 * 109.47137 * 209.97512 * 1 2 3 34 34 H 1.09001 * 109.46670 * 329.97101 * 1 2 3 35 35 H 1.07992 * 125.42550 * 180.02562 * 4 3 2 36 36 H 1.09007 * 109.46809 * 85.09766 * 6 5 4 37 37 H 1.08994 * 109.47081 * 205.09677 * 6 5 4 38 38 H 1.08996 * 109.47467 * 325.10135 * 6 5 4 39 39 H 0.96995 * 119.99611 * 4.51651 * 10 8 7 40 40 H 1.09004 * 110.10537 * 317.77113 * 15 13 11 41 41 H 1.08998 * 110.10177 * 79.42867 * 15 13 11 42 42 H 1.09002 * 109.04587 * 294.83873 * 16 15 13 43 43 H 1.09000 * 108.63745 * 176.38047 * 16 15 13 44 44 H 1.08995 * 109.00319 * 192.39527 * 17 16 15 45 45 H 1.08994 * 109.00372 * 73.61722 * 17 16 15 46 46 H 0.96993 * 120.00028 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.47182 * 147.49617 * 30 29 27 48 48 H 1.09000 * 109.47414 * 267.49875 * 30 29 27 49 49 H 1.09006 * 109.47062 * 27.50223 * 30 29 27 50 50 H 1.08993 * 109.47815 * 306.07819 * 31 29 27 51 51 H 1.09002 * 109.47367 * 66.08096 * 31 29 27 52 52 H 1.09004 * 109.47194 * 186.07428 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0770 0.0000 4 6 3.5479 0.7071 -0.0006 5 7 3.6121 -0.6364 -0.0015 6 6 4.8305 -1.4500 -0.0029 7 6 2.3123 -1.1042 -0.0061 8 6 1.8820 -2.5074 -0.0146 9 8 1.6817 -3.0760 -1.0716 10 7 1.7086 -3.1661 1.1484 11 6 1.3757 -4.5926 1.1396 12 1 1.7557 -5.1174 0.2630 13 6 -0.0602 -4.8892 1.4570 14 1 -0.3205 -5.9323 1.2774 15 6 -1.2373 -3.9749 1.2027 16 6 -2.3836 -4.5074 2.1025 17 6 -1.9860 -4.5864 3.5726 18 7 -0.6599 -5.2280 3.7528 19 6 -0.4440 -6.2738 4.6100 20 1 0.2849 -7.0319 4.3641 21 6 -1.1618 -6.3596 5.7950 22 7 -2.0355 -5.4250 6.1043 23 14 -0.8879 -7.8015 6.9506 24 1 0.5310 -7.8224 7.3884 25 1 -1.7703 -7.6598 8.1366 26 1 -1.2071 -9.0687 6.2453 27 6 0.3884 -4.6411 2.9341 28 1 0.5336 -3.5828 3.1510 29 6 1.6502 -5.3190 2.4901 30 6 1.5458 -6.8433 2.4118 31 6 2.9075 -4.8347 3.2151 32 1 -0.3633 0.0005 -1.0276 33 1 -0.3633 -0.8902 0.5134 34 1 -0.3633 0.8898 0.5143 35 1 4.3971 1.3742 -0.0003 36 1 5.1821 -1.5794 1.0208 37 1 4.6155 -2.4254 -0.4392 38 1 5.6003 -0.9505 -0.5910 39 1 1.8043 -2.6955 1.9912 40 1 -0.9810 -2.9503 1.4722 41 1 -1.5312 -4.0254 0.1543 42 1 -2.6706 -5.5021 1.7615 43 1 -3.2409 -3.8414 2.0051 44 1 -2.7360 -5.1641 4.1126 45 1 -1.9515 -3.5783 3.9856 46 1 -2.5373 -5.4852 6.9322 47 1 2.1817 -7.2102 1.6062 48 1 1.8694 -7.2788 3.3572 49 1 0.5116 -7.1271 2.2161 50 1 2.9802 -3.7504 3.1316 51 1 2.8511 -5.1150 4.2669 52 1 3.7869 -5.2937 2.7634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087290894.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:42 Heat of formation + Delta-G solvation = 96.776246 kcal Electronic energy + Delta-G solvation = -32889.068514 eV Core-core repulsion = 28892.136929 eV Total energy + Delta-G solvation = -3996.931585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.35681 -41.16515 -38.61566 -35.25166 -34.65206 -33.38979 -32.88229 -31.34469 -30.19249 -29.37969 -28.53908 -27.18119 -26.31225 -25.82549 -24.75421 -22.91162 -22.40329 -20.85889 -20.52903 -20.02102 -19.14328 -18.33295 -17.69219 -16.77061 -16.36508 -15.93848 -15.35362 -15.25029 -14.82394 -14.25400 -14.17462 -14.04004 -13.81170 -13.70275 -13.68534 -13.34891 -13.17563 -12.84327 -12.77813 -12.58953 -12.46501 -12.39427 -12.20306 -12.09405 -11.82213 -11.36727 -11.15128 -11.10104 -10.85133 -10.70937 -10.56440 -10.41622 -10.26764 -10.07810 -9.94883 -9.93787 -9.87322 -9.76711 -9.34897 -8.84984 -8.76111 -8.52422 -8.44342 -6.47656 -5.77541 -3.28969 1.56847 2.07446 2.75369 2.86208 3.26411 3.34929 3.40576 3.41403 4.33104 4.39930 4.45808 4.57890 4.63381 4.77025 4.93469 4.96512 5.04400 5.12861 5.17097 5.24832 5.43125 5.51419 5.68469 5.73723 5.79450 5.81820 5.86055 5.90092 5.90933 5.97070 6.00684 6.02532 6.24081 6.28285 6.32124 6.36425 6.42540 6.48373 6.54013 6.59144 6.61750 6.72438 6.79763 6.86687 6.89170 7.03039 7.12168 7.43756 7.50342 7.73659 7.80614 7.81753 8.15112 8.46273 9.18831 9.81697 10.51115 11.29540 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015632 B = 0.003399 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.795144 B = 8236.543012 C = 8780.480266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.061 3.939 3 N -0.492 5.492 4 C 0.197 3.803 5 N -0.439 5.439 6 C 0.068 3.932 7 C -0.078 4.078 8 C 0.599 3.401 9 O -0.525 6.525 10 N -0.688 5.688 11 C 0.139 3.861 12 H 0.094 0.906 13 C -0.171 4.171 14 H 0.100 0.900 15 C -0.084 4.084 16 C -0.136 4.136 17 C 0.168 3.832 18 N -0.571 5.571 19 C -0.248 4.248 20 H 0.073 0.927 21 C 0.008 3.992 22 N -0.905 5.905 23 Si 0.898 3.102 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.152 3.848 28 H 0.043 0.957 29 C -0.065 4.065 30 C -0.116 4.116 31 C -0.133 4.133 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.210 0.790 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.403 0.597 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.049 0.951 43 H 0.047 0.953 44 H 0.091 0.909 45 H 0.013 0.987 46 H 0.254 0.746 47 H 0.042 0.958 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.045 0.955 51 H 0.065 0.935 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.090 7.396 -10.587 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 N -0.211 5.211 4 C -0.084 4.084 5 N -0.123 5.123 6 C -0.074 4.074 7 C -0.194 4.194 8 C 0.382 3.618 9 O -0.400 6.400 10 N -0.339 5.339 11 C 0.034 3.966 12 H 0.112 0.888 13 C -0.192 4.192 14 H 0.118 0.882 15 C -0.122 4.122 16 C -0.176 4.176 17 C 0.043 3.957 18 N -0.292 5.292 19 C -0.377 4.377 20 H 0.091 0.909 21 C -0.191 4.191 22 N -0.549 5.549 23 Si 0.728 3.272 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.044 3.956 28 H 0.061 0.939 29 C -0.067 4.067 30 C -0.173 4.173 31 C -0.190 4.190 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.227 0.773 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.240 0.760 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.031 0.969 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.064 0.936 51 H 0.084 0.916 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.697 7.633 -11.120 17.853 hybrid contribution 0.572 -1.126 1.178 1.727 sum 12.270 6.507 -9.942 17.080 Atomic orbital electron populations 1.20174 0.86926 1.03336 1.02888 1.20882 0.96480 0.86756 1.03110 1.70007 1.00351 1.30176 1.20528 1.24968 0.97230 0.81598 1.04643 1.45263 1.05825 1.07726 1.53439 1.22162 0.84626 0.96493 1.04106 1.20757 0.84777 0.95191 1.18653 1.16802 0.77634 0.83199 0.84203 1.90840 1.50687 1.67474 1.30981 1.45767 1.69747 1.10319 1.08068 1.21613 0.96954 0.79794 0.98278 0.88798 1.23321 0.92650 1.00865 1.02413 0.88210 1.21214 0.95275 0.97815 0.97915 1.22310 0.96487 0.99597 0.99171 1.20856 0.88491 0.96441 0.89925 1.43805 1.01438 1.36323 1.47676 1.19205 1.21847 1.00182 0.96463 0.90931 1.25320 0.99640 0.97408 0.96749 1.69892 1.27003 1.33686 1.24359 0.86443 0.77655 0.82308 0.80764 1.20951 1.21696 1.20980 1.21717 0.89712 0.94139 0.90051 0.93942 1.21868 0.95180 0.96435 0.93177 1.21635 1.02753 0.91815 1.01120 1.21669 0.96521 0.99676 1.01142 0.90761 0.90901 0.90459 0.77323 0.89805 0.89392 0.88974 0.75991 0.93139 0.93899 0.93209 0.93470 0.89107 0.96889 0.93607 0.93873 0.91620 0.90627 0.93638 0.91614 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.24 36.01 0.37 -0.58 16 2 C 0.06 0.84 7.15 -82.52 -0.59 0.25 16 3 N -0.49 -6.60 11.20 -10.65 -0.12 -6.72 16 4 C 0.20 1.99 12.52 -90.57 -1.13 0.85 16 5 N -0.44 -4.56 3.17 -121.97 -0.39 -4.94 16 6 C 0.07 0.45 11.07 59.85 0.66 1.11 16 7 C -0.08 -1.04 6.66 -82.14 -0.55 -1.59 16 8 C 0.60 8.82 6.73 -12.81 -0.09 8.73 16 9 O -0.53 -9.44 16.82 5.21 0.09 -9.36 16 10 N -0.69 -9.49 4.32 -58.95 -0.25 -9.74 16 11 C 0.14 2.10 3.87 -71.84 -0.28 1.82 16 12 H 0.09 1.46 7.66 -51.93 -0.40 1.06 16 13 C -0.17 -2.95 2.94 -95.82 -0.28 -3.23 16 14 H 0.10 1.84 6.07 -51.93 -0.32 1.53 16 15 C -0.08 -1.47 6.01 -26.50 -0.16 -1.63 16 16 C -0.14 -2.59 5.93 -25.85 -0.15 -2.74 16 17 C 0.17 3.85 5.26 -3.24 -0.02 3.84 16 18 N -0.57 -13.20 2.86 -169.42 -0.48 -13.69 16 19 C -0.25 -6.26 9.08 -15.06 -0.14 -6.40 16 20 H 0.07 1.76 5.08 -52.49 -0.27 1.49 16 21 C 0.01 0.20 5.31 -17.43 -0.09 0.11 16 22 N -0.91 -25.32 10.90 55.49 0.61 -24.72 16 23 Si 0.90 20.92 29.55 -169.99 -5.02 15.90 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.15 2.88 2.91 -72.14 -0.21 2.67 16 28 H 0.04 0.84 6.60 -51.93 -0.34 0.50 16 29 C -0.07 -1.03 1.38 -159.15 -0.22 -1.25 16 30 C -0.12 -1.84 7.29 37.15 0.27 -1.57 16 31 C -0.13 -1.85 9.12 37.16 0.34 -1.51 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.93 7.78 -51.93 -0.40 0.53 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.21 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.68 7.79 -51.93 -0.40 0.27 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.40 5.33 6.17 -40.82 -0.25 5.08 16 40 H 0.05 0.87 7.80 -51.93 -0.41 0.46 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 2.37 6.22 -51.93 -0.32 2.04 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 1.08 7.04 -51.93 -0.37 0.72 16 49 H 0.07 1.34 5.71 -51.93 -0.30 1.05 16 50 H 0.04 0.57 6.43 -51.93 -0.33 0.24 16 51 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 52 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 399.88 15.07 6.03 6.03 Total: -1.00 -31.76 399.88 -10.13 -41.89 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -8.31 Total: 6.45 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.26 Total: -1.11 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.64 Total: -59.80 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.76 -10.13 -41.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087290894.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.670 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds