Wall clock time and date at job start Wed Apr 1 2020 04:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33312 * 126.11260 * 2 1 4 4 C 1.30854 * 109.69135 * 180.02562 * 3 2 1 5 5 N 1.34503 * 109.15961 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.47174 * 179.97438 * 5 4 3 7 7 C 1.36663 * 126.10258 * 180.31650 * 2 1 3 8 8 C 1.46774 * 126.84913 * 0.03459 * 7 2 1 9 9 O 1.21681 * 119.99869 * 88.72401 * 8 7 2 10 10 N 1.34776 * 119.99876 * 268.72816 * 8 7 2 11 11 C 1.46493 * 119.99852 * 184.51658 * 10 8 7 12 12 H 1.09006 * 113.22691 * 28.30345 * 11 10 8 13 13 C 1.50010 * 114.12888 * 255.49783 * 11 10 8 14 14 H 1.08999 * 112.51334 * 170.15719 * 13 11 10 15 15 C 1.51202 * 126.16022 * 27.75138 * 13 11 10 16 16 C 1.55145 * 105.67097 * 198.22972 * 15 13 11 17 17 C 1.52501 * 112.59635 * 55.75728 * 16 15 13 18 18 N 1.48412 * 111.86247 * 313.00430 * 17 16 15 19 19 C 1.36933 * 123.16823 * 231.80593 * 18 17 16 20 20 H 1.08001 * 119.99918 * 146.60642 * 19 18 17 21 21 C 1.38809 * 120.00139 * 326.60692 * 19 18 17 22 22 N 1.31621 * 120.00099 * 358.97377 * 21 19 18 23 23 Si 1.86803 * 120.00096 * 178.96822 * 21 19 18 24 24 H 1.48507 * 109.47102 * 60.00238 * 23 21 19 25 25 H 1.48497 * 109.47110 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47250 * 300.00317 * 23 21 19 27 27 C 1.45383 * 113.66180 * 51.83898 * 18 17 16 28 28 H 1.09001 * 112.08545 * 59.75475 * 27 18 17 29 29 C 1.49964 * 126.22497 * 204.16896 * 27 18 17 30 30 C 1.52995 * 114.08540 * 25.66656 * 29 27 18 31 31 C 1.52998 * 114.08106 * 253.24443 * 29 27 18 32 32 H 1.08997 * 109.47256 * 89.97097 * 1 2 3 33 33 H 1.08999 * 109.47137 * 209.97512 * 1 2 3 34 34 H 1.09001 * 109.46670 * 329.97101 * 1 2 3 35 35 H 1.07992 * 125.42550 * 180.02562 * 4 3 2 36 36 H 1.09007 * 109.46809 * 85.09766 * 6 5 4 37 37 H 1.08994 * 109.47081 * 205.09677 * 6 5 4 38 38 H 1.08996 * 109.47467 * 325.10135 * 6 5 4 39 39 H 0.96995 * 119.99611 * 4.51651 * 10 8 7 40 40 H 1.09004 * 110.10537 * 317.77113 * 15 13 11 41 41 H 1.08998 * 110.10177 * 79.42867 * 15 13 11 42 42 H 1.09002 * 109.04587 * 294.83873 * 16 15 13 43 43 H 1.09000 * 108.63745 * 176.38047 * 16 15 13 44 44 H 1.08995 * 109.00319 * 192.39527 * 17 16 15 45 45 H 1.08994 * 109.00372 * 73.61722 * 17 16 15 46 46 H 0.96993 * 120.00028 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.47182 * 147.49617 * 30 29 27 48 48 H 1.09000 * 109.47414 * 267.49875 * 30 29 27 49 49 H 1.09006 * 109.47062 * 27.50223 * 30 29 27 50 50 H 1.08993 * 109.47815 * 306.07819 * 31 29 27 51 51 H 1.09002 * 109.47367 * 66.08096 * 31 29 27 52 52 H 1.09004 * 109.47194 * 186.07428 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0770 0.0000 4 6 3.5479 0.7071 -0.0006 5 7 3.6121 -0.6364 -0.0015 6 6 4.8305 -1.4500 -0.0029 7 6 2.3123 -1.1042 -0.0061 8 6 1.8820 -2.5074 -0.0146 9 8 1.6817 -3.0760 -1.0716 10 7 1.7086 -3.1661 1.1484 11 6 1.3757 -4.5926 1.1396 12 1 1.7557 -5.1174 0.2630 13 6 -0.0602 -4.8892 1.4570 14 1 -0.3205 -5.9323 1.2774 15 6 -1.2373 -3.9749 1.2027 16 6 -2.3836 -4.5074 2.1025 17 6 -1.9860 -4.5864 3.5726 18 7 -0.6599 -5.2280 3.7528 19 6 -0.4440 -6.2738 4.6100 20 1 0.2849 -7.0319 4.3641 21 6 -1.1618 -6.3596 5.7950 22 7 -2.0355 -5.4250 6.1043 23 14 -0.8879 -7.8015 6.9506 24 1 0.5310 -7.8224 7.3884 25 1 -1.7703 -7.6598 8.1366 26 1 -1.2071 -9.0687 6.2453 27 6 0.3884 -4.6411 2.9341 28 1 0.5336 -3.5828 3.1510 29 6 1.6502 -5.3190 2.4901 30 6 1.5458 -6.8433 2.4118 31 6 2.9075 -4.8347 3.2151 32 1 -0.3633 0.0005 -1.0276 33 1 -0.3633 -0.8902 0.5134 34 1 -0.3633 0.8898 0.5143 35 1 4.3971 1.3742 -0.0003 36 1 5.1821 -1.5794 1.0208 37 1 4.6155 -2.4254 -0.4392 38 1 5.6003 -0.9505 -0.5910 39 1 1.8043 -2.6955 1.9912 40 1 -0.9810 -2.9503 1.4722 41 1 -1.5312 -4.0254 0.1543 42 1 -2.6706 -5.5021 1.7615 43 1 -3.2409 -3.8414 2.0051 44 1 -2.7360 -5.1641 4.1126 45 1 -1.9515 -3.5783 3.9856 46 1 -2.5373 -5.4852 6.9322 47 1 2.1817 -7.2102 1.6062 48 1 1.8694 -7.2788 3.3572 49 1 0.5116 -7.1271 2.2161 50 1 2.9802 -3.7504 3.1316 51 1 2.8511 -5.1150 4.2669 52 1 3.7869 -5.2937 2.7634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087290894.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:41 Heat of formation + Delta-G solvation = 79.200652 kcal Electronic energy + Delta-G solvation = -32889.830649 eV Core-core repulsion = 28892.136929 eV Total energy + Delta-G solvation = -3997.693720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.25022 -42.51518 -39.86799 -36.89071 -35.42671 -34.77326 -34.50059 -32.37753 -31.92385 -30.76960 -29.39082 -28.45116 -27.51303 -27.09846 -26.27070 -24.11958 -23.86924 -22.14814 -21.72731 -21.15375 -20.53934 -19.73171 -18.68560 -18.50171 -17.36575 -16.83350 -16.75507 -16.42519 -16.25314 -15.68064 -15.45803 -15.42475 -15.29876 -15.03169 -14.69433 -14.46080 -14.26521 -14.10628 -13.95465 -13.93466 -13.61156 -13.53151 -13.25033 -13.18624 -13.13740 -12.84309 -12.78910 -12.74052 -12.42163 -12.31341 -12.10281 -11.93694 -11.71428 -11.67318 -11.52773 -11.36174 -10.99511 -10.92153 -10.59345 -10.49305 -10.29906 -10.04787 -9.44717 -8.37536 -7.75951 -5.29652 0.67977 1.09760 1.48895 1.49302 1.55216 1.75194 1.98650 2.24280 2.54441 3.26550 3.40401 3.47543 3.51733 3.66748 3.72007 3.85020 3.92332 4.13326 4.14292 4.26212 4.29532 4.36725 4.37653 4.48545 4.55656 4.62566 4.64719 4.72016 4.73922 4.77424 4.82672 4.86939 4.94877 5.00242 5.04498 5.10852 5.12665 5.15576 5.18508 5.21776 5.31374 5.34966 5.47571 5.52374 5.55368 5.58350 5.75157 5.80902 5.82950 6.16384 6.34727 6.50169 6.94243 7.00794 7.21140 7.91070 8.58573 9.28541 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015632 B = 0.003399 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.795144 B = 8236.543012 C = 8780.480266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.043 3.957 3 N -0.528 5.528 4 C 0.215 3.785 5 N -0.436 5.436 6 C 0.062 3.938 7 C -0.100 4.100 8 C 0.610 3.390 9 O -0.559 6.559 10 N -0.679 5.679 11 C 0.157 3.843 12 H 0.100 0.900 13 C -0.163 4.163 14 H 0.090 0.910 15 C -0.077 4.077 16 C -0.126 4.126 17 C 0.176 3.824 18 N -0.586 5.586 19 C -0.242 4.242 20 H 0.084 0.916 21 C -0.051 4.051 22 N -0.940 5.940 23 Si 0.956 3.044 24 H -0.275 1.275 25 H -0.302 1.302 26 H -0.278 1.278 27 C 0.138 3.862 28 H 0.038 0.962 29 C -0.059 4.059 30 C -0.113 4.113 31 C -0.128 4.128 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.256 0.744 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.125 0.875 39 H 0.408 0.592 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.062 0.938 44 H 0.055 0.945 45 H -0.012 1.012 46 H 0.245 0.755 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.052 0.948 50 H 0.057 0.943 51 H 0.047 0.953 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.181 7.742 -11.929 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 N -0.247 5.247 4 C -0.067 4.067 5 N -0.119 5.119 6 C -0.079 4.079 7 C -0.217 4.217 8 C 0.395 3.605 9 O -0.436 6.436 10 N -0.329 5.329 11 C 0.051 3.949 12 H 0.118 0.882 13 C -0.184 4.184 14 H 0.108 0.892 15 C -0.115 4.115 16 C -0.165 4.165 17 C 0.051 3.949 18 N -0.308 5.308 19 C -0.372 4.372 20 H 0.101 0.899 21 C -0.246 4.246 22 N -0.587 5.587 23 Si 0.785 3.215 24 H -0.201 1.201 25 H -0.228 1.228 26 H -0.204 1.204 27 C 0.030 3.970 28 H 0.055 0.945 29 C -0.060 4.060 30 C -0.171 4.171 31 C -0.185 4.185 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.272 0.728 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.143 0.857 39 H 0.245 0.755 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.006 0.994 46 H 0.054 0.946 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.066 0.934 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.833 7.965 -12.473 20.953 hybrid contribution -0.336 -1.173 1.541 1.966 sum 14.497 6.792 -10.932 19.386 Atomic orbital electron populations 1.20159 0.86974 1.03173 1.02929 1.21091 0.96999 0.87346 1.03553 1.69997 1.01864 1.30466 1.22380 1.25871 0.97458 0.81917 1.01497 1.45493 1.05716 1.08177 1.52470 1.22479 0.83706 0.95848 1.05853 1.20536 0.86444 0.94114 1.20580 1.16883 0.76576 0.83519 0.83553 1.90820 1.52244 1.68471 1.32107 1.45664 1.69267 1.09758 1.08239 1.21371 0.94972 0.80511 0.98016 0.88191 1.23273 0.93920 1.00381 1.00868 0.89164 1.21135 0.94645 0.97780 0.97945 1.22139 0.97754 0.99997 0.96635 1.20618 0.88113 0.94226 0.91923 1.43980 1.02695 1.36275 1.47836 1.19611 1.20675 1.00715 0.96179 0.89871 1.25999 1.00230 0.99829 0.98494 1.70084 1.28472 1.35679 1.24416 0.85507 0.77478 0.79866 0.78605 1.20096 1.22832 1.20417 1.21965 0.91047 0.94078 0.89904 0.94457 1.21865 0.94532 0.96438 0.93195 1.21576 1.01952 0.91722 1.01815 1.21627 0.96376 1.00675 0.99837 0.90613 0.91700 0.89926 0.72821 0.88012 0.90667 0.85668 0.75462 0.92962 0.92746 0.93508 0.91972 0.92668 0.99379 0.94596 0.90848 0.92422 0.92884 0.92437 0.93421 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.86 10.24 71.24 0.73 -1.13 16 2 C 0.04 1.16 7.15 41.97 0.30 1.46 16 3 N -0.53 -13.22 11.20 -187.60 -2.10 -15.32 16 4 C 0.21 3.62 12.52 180.33 2.26 5.88 16 5 N -0.44 -7.79 3.17 -539.81 -1.71 -9.50 16 6 C 0.06 0.58 11.07 127.77 1.41 1.99 16 7 C -0.10 -2.53 6.66 40.01 0.27 -2.26 16 8 C 0.61 17.10 6.73 86.47 0.58 17.68 16 9 O -0.56 -19.44 16.82 -4.29 -0.07 -19.51 16 10 N -0.68 -17.60 4.32 -458.65 -1.98 -19.58 16 11 C 0.16 4.46 3.87 42.46 0.16 4.62 16 12 H 0.10 2.84 7.66 -2.38 -0.02 2.83 16 13 C -0.16 -5.49 2.94 -14.16 -0.04 -5.53 16 14 H 0.09 3.27 6.07 -2.39 -0.01 3.26 16 15 C -0.08 -2.64 6.01 30.74 0.18 -2.45 16 16 C -0.13 -4.84 5.93 31.16 0.18 -4.66 16 17 C 0.18 8.43 5.26 85.85 0.45 8.89 16 18 N -0.59 -27.64 2.86 -689.92 -1.97 -29.61 16 19 C -0.24 -12.39 9.08 84.03 0.76 -11.63 16 20 H 0.08 4.02 5.08 -2.91 -0.01 4.01 16 21 C -0.05 -2.75 5.31 84.86 0.45 -2.30 16 22 N -0.94 -54.74 10.90 21.65 0.24 -54.51 16 23 Si 0.96 43.78 29.55 68.60 2.03 45.81 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 27 C 0.14 5.16 2.91 42.87 0.12 5.28 16 28 H 0.04 1.47 6.60 -2.39 -0.02 1.45 16 29 C -0.06 -1.77 1.38 -55.19 -0.08 -1.84 16 30 C -0.11 -3.40 7.29 71.98 0.52 -2.87 16 31 C -0.13 -3.25 9.12 71.98 0.66 -2.59 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.06 1.67 7.78 -2.39 -0.02 1.65 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.26 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.07 0.94 7.79 -2.39 -0.02 0.92 16 38 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.41 10.13 6.17 -92.71 -0.57 9.56 16 40 H 0.05 1.77 7.80 -2.39 -0.02 1.75 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.05 3.03 6.22 -2.39 -0.01 3.01 16 45 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 46 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 47 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.06 1.81 7.04 -2.39 -0.02 1.79 16 49 H 0.05 1.83 5.71 -2.38 -0.01 1.82 16 50 H 0.06 1.31 6.43 -2.39 -0.02 1.29 16 51 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -71.52 399.88 3.72 -67.80 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.36 Total: 25.89 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 8.94 Total: 8.54 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -7.53 Total: -128.53 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.07 Total: -19.51 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -71.52 3.72 -67.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087290894.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.999 kcal (2) G-P(sol) polarization free energy of solvation -71.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds