Wall clock time and date at job start Wed Apr 1 2020 04:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34668 * 126.58956 * 2 1 4 4 N 1.34130 * 108.01869 * 179.74170 * 3 2 1 5 5 C 1.30505 * 109.25686 * 0.36635 * 4 3 2 6 6 N 1.35045 * 108.69544 * 359.63228 * 5 4 3 7 7 C 1.46501 * 126.39512 * 180.20759 * 6 5 4 8 8 C 1.50700 * 109.46933 * 265.02287 * 7 6 5 9 9 O 1.21283 * 120.00172 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99983 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00309 * 180.02562 * 10 8 7 12 12 H 1.09004 * 112.86353 * 25.33190 * 11 10 8 13 13 C 1.54152 * 113.63692 * 254.06731 * 11 10 8 14 14 H 1.08997 * 114.24851 * 26.67907 * 13 11 10 15 15 C 1.53060 * 111.69141 * 156.94259 * 13 11 10 16 16 C 1.53020 * 109.41134 * 146.40106 * 15 13 11 17 17 C 1.52941 * 108.93398 * 295.35393 * 16 15 13 18 18 N 1.45891 * 109.88841 * 57.34178 * 17 16 15 19 19 C 1.36935 * 118.48363 * 140.68595 * 18 17 16 20 20 H 1.08006 * 120.00094 * 206.50659 * 19 18 17 21 21 C 1.38813 * 119.99977 * 26.50276 * 19 18 17 22 22 N 1.31618 * 120.00110 * 13.79109 * 21 19 18 23 23 Si 1.86805 * 119.99965 * 193.79504 * 21 19 18 24 24 H 1.48503 * 109.46787 * 89.99801 * 23 21 19 25 25 H 1.48497 * 109.46944 * 209.99808 * 23 21 19 26 26 H 1.48495 * 109.47222 * 329.99973 * 23 21 19 27 27 C 1.45867 * 123.34513 * 321.05670 * 18 17 16 28 28 H 1.09001 * 113.03259 * 156.55071 * 27 18 17 29 29 C 1.53673 * 114.08405 * 285.91778 * 27 18 17 30 30 C 1.53000 * 113.68329 * 28.32219 * 29 27 18 31 31 C 1.52998 * 113.77001 * 257.11103 * 29 27 18 32 32 H 1.08998 * 109.47059 * 270.04535 * 1 2 3 33 33 H 1.09006 * 109.46759 * 30.04628 * 1 2 3 34 34 H 1.08997 * 109.46766 * 150.04153 * 1 2 3 35 35 H 1.08001 * 125.99567 * 359.97438 * 3 2 1 36 36 H 1.07995 * 125.64824 * 179.88978 * 5 4 3 37 37 H 1.09001 * 109.47215 * 25.01639 * 7 6 5 38 38 H 1.08997 * 109.47406 * 145.02356 * 7 6 5 39 39 H 0.96998 * 120.00286 * 359.97438 * 10 8 7 40 40 H 1.09002 * 109.48496 * 266.39062 * 15 13 11 41 41 H 1.09009 * 109.48117 * 26.40944 * 15 13 11 42 42 H 1.09003 * 109.56040 * 55.18882 * 16 15 13 43 43 H 1.09004 * 109.56202 * 175.40715 * 16 15 13 44 44 H 1.08990 * 109.40315 * 177.47425 * 17 16 15 45 45 H 1.09009 * 109.39804 * 297.30786 * 17 16 15 46 46 H 0.96997 * 120.00070 * 179.97438 * 22 21 19 47 47 H 1.08995 * 109.46930 * 145.58710 * 30 29 27 48 48 H 1.09002 * 109.46711 * 265.57952 * 30 29 27 49 49 H 1.08992 * 109.47074 * 25.58024 * 30 29 27 50 50 H 1.09003 * 109.46955 * 303.53846 * 31 29 27 51 51 H 1.08998 * 109.47567 * 63.53889 * 31 29 27 52 52 H 1.09001 * 109.47074 * 183.54598 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 0.0058 5 6 3.5969 -0.6508 0.0014 6 7 2.3230 -1.0990 0.0009 7 6 1.8943 -2.4999 0.0009 8 6 1.6301 -2.9443 -1.4146 9 8 1.7842 -2.1673 -2.3330 10 7 1.2226 -4.2053 -1.6601 11 6 0.9663 -4.6376 -3.0362 12 1 1.5269 -4.0615 -3.7725 13 6 -0.5319 -4.7773 -3.3712 14 1 -1.1853 -4.1410 -2.7744 15 6 -0.7878 -4.6662 -4.8762 16 6 -1.9600 -5.5714 -5.2609 17 6 -1.5661 -7.0276 -5.0089 18 7 -1.1846 -7.2039 -3.6119 19 6 -1.5700 -8.3500 -2.9693 20 1 -1.6989 -8.3507 -1.8969 21 6 -1.7952 -9.5110 -3.6961 22 7 -1.3852 -9.5963 -4.9439 23 14 -2.6803 -10.9524 -2.9033 24 1 -4.1419 -10.8219 -3.1314 25 1 -2.1968 -12.2214 -3.5043 26 1 -2.4059 -10.9598 -1.4439 27 6 -0.4184 -6.2168 -2.8592 28 1 -0.5638 -6.2953 -1.7818 29 6 1.0707 -6.1599 -3.2344 30 6 1.3567 -6.5735 -4.6794 31 6 1.9883 -6.8499 -2.2231 32 1 -0.3633 0.0008 1.0276 33 1 -0.3633 0.8896 -0.5146 34 1 -0.3633 -0.8903 -0.5132 35 1 1.9865 2.1118 -0.0004 36 1 4.4819 -1.2697 0.0027 37 1 2.6783 -3.1198 0.4359 38 1 0.9826 -2.6010 0.5896 39 1 1.0998 -4.8269 -0.9257 40 1 -1.0277 -3.6334 -5.1289 41 1 0.1045 -4.9757 -5.4205 42 1 -2.8303 -5.3188 -4.6552 43 1 -2.1971 -5.4331 -6.3158 44 1 -2.4114 -7.6762 -5.2381 45 1 -0.7238 -7.2907 -5.6489 46 1 -1.5422 -10.4077 -5.4516 47 1 2.1881 -5.9854 -5.0678 48 1 1.6149 -7.6320 -4.7100 49 1 0.4709 -6.3978 -5.2897 50 1 1.8351 -6.4130 -1.2363 51 1 1.7563 -7.9144 -2.1891 52 1 3.0273 -6.7138 -2.5233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087296901.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:53 Heat of formation + Delta-G solvation = 71.913425 kcal Electronic energy + Delta-G solvation = -32195.710508 eV Core-core repulsion = 28197.700790 eV Total energy + Delta-G solvation = -3998.009718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.08158 -42.28586 -40.15232 -36.97262 -35.02793 -34.80869 -34.01596 -32.80940 -32.20571 -31.36670 -29.02240 -28.23730 -27.29802 -27.15031 -25.92784 -24.09671 -22.93882 -22.40705 -21.99437 -20.91489 -20.66475 -19.19863 -18.69651 -18.35710 -18.04817 -17.06021 -16.59858 -16.42826 -16.21598 -15.91664 -15.56899 -15.34046 -15.22797 -14.76652 -14.62386 -14.56527 -14.18297 -14.08894 -13.93034 -13.73170 -13.60209 -13.55678 -13.27938 -13.18456 -13.16363 -12.90533 -12.84120 -12.74076 -12.56130 -12.43334 -12.05091 -11.99391 -11.58669 -11.51410 -11.30593 -11.11638 -11.00763 -10.92132 -10.64932 -10.41610 -10.31445 -9.90663 -9.20185 -8.53107 -7.77082 -5.22515 0.99660 1.47142 1.47864 1.50486 1.56820 1.70407 2.18914 2.29222 2.55072 3.35600 3.54485 3.56602 3.69411 3.75356 3.82083 3.84430 3.91867 3.98168 4.03825 4.16060 4.28295 4.28596 4.41974 4.48669 4.54829 4.58948 4.68886 4.74775 4.75202 4.80895 4.87338 4.89813 4.95338 5.01488 5.04777 5.11457 5.12512 5.15450 5.28698 5.31034 5.40515 5.43727 5.50791 5.58592 5.63735 5.72056 5.76662 5.84046 6.00242 6.22810 6.46105 6.51099 7.13469 7.16158 7.27221 8.03668 8.40165 9.25922 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019646 B = 0.002659 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.884787 B =10527.357780 C =10716.156043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.017 4.017 3 C -0.061 4.061 4 N -0.533 5.533 5 C 0.181 3.819 6 N -0.444 5.444 7 C 0.086 3.914 8 C 0.498 3.502 9 O -0.571 6.571 10 N -0.690 5.690 11 C 0.146 3.854 12 H 0.082 0.918 13 C -0.121 4.121 14 H 0.075 0.925 15 C -0.103 4.103 16 C -0.133 4.133 17 C 0.189 3.811 18 N -0.584 5.584 19 C -0.259 4.259 20 H 0.067 0.933 21 C -0.045 4.045 22 N -0.930 5.930 23 Si 0.955 3.045 24 H -0.292 1.292 25 H -0.301 1.301 26 H -0.268 1.268 27 C 0.175 3.825 28 H 0.079 0.921 29 C -0.110 4.110 30 C -0.129 4.129 31 C -0.120 4.120 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.176 0.824 36 H 0.230 0.770 37 H 0.166 0.834 38 H 0.151 0.849 39 H 0.416 0.584 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.032 0.968 45 H 0.018 0.982 46 H 0.245 0.755 47 H 0.049 0.951 48 H 0.030 0.970 49 H 0.082 0.918 50 H 0.074 0.926 51 H 0.037 0.963 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.842 13.301 11.444 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.131 4.131 3 C -0.207 4.207 4 N -0.251 5.251 5 C -0.101 4.101 6 N -0.127 5.127 7 C -0.039 4.039 8 C 0.284 3.716 9 O -0.450 6.450 10 N -0.342 5.342 11 C 0.040 3.960 12 H 0.100 0.900 13 C -0.142 4.142 14 H 0.093 0.907 15 C -0.141 4.141 16 C -0.172 4.172 17 C 0.064 3.936 18 N -0.303 5.303 19 C -0.390 4.390 20 H 0.085 0.915 21 C -0.240 4.240 22 N -0.577 5.577 23 Si 0.785 3.215 24 H -0.220 1.220 25 H -0.228 1.228 26 H -0.193 1.193 27 C 0.066 3.934 28 H 0.097 0.903 29 C -0.114 4.114 30 C -0.186 4.186 31 C -0.178 4.178 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.193 0.807 36 H 0.246 0.754 37 H 0.183 0.817 38 H 0.169 0.831 39 H 0.255 0.745 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.054 0.946 47 H 0.068 0.932 48 H 0.049 0.951 49 H 0.101 0.899 50 H 0.093 0.907 51 H 0.056 0.944 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.577 14.097 10.708 18.561 hybrid contribution -1.171 -2.088 -0.022 2.394 sum 4.407 12.010 10.686 16.668 Atomic orbital electron populations 1.20281 0.85558 1.03641 1.03713 1.21643 0.95714 0.86720 1.09059 1.22328 0.88526 0.99479 1.10363 1.70201 1.23472 1.10377 1.21036 1.25440 0.88168 0.91673 1.04833 1.45018 1.07102 1.06242 1.54315 1.21991 1.07598 0.80438 0.93879 1.21279 0.76387 0.81874 0.92044 1.90787 1.52851 1.53865 1.47455 1.45577 1.67347 1.12367 1.08909 1.21923 0.95571 0.94888 0.83647 0.90003 1.23124 0.96203 0.97869 0.97036 0.90677 1.21489 0.99111 0.99058 0.94428 1.21925 0.97917 0.96893 1.00484 1.20381 0.97083 0.91676 0.84425 1.43564 1.60304 1.17466 1.08921 1.19530 1.38828 0.88225 0.92392 0.91514 1.25610 1.01841 0.99390 0.97168 1.70195 1.49649 1.27391 1.10444 0.85448 0.78250 0.79409 0.78391 1.21952 1.22841 1.19317 1.21746 0.89102 0.87669 0.94878 0.90280 1.22896 0.99399 0.92662 0.96477 1.21901 1.01823 0.99315 0.95591 1.21528 0.98292 0.99654 0.98308 0.88797 0.89465 0.92279 0.80673 0.75401 0.81667 0.83135 0.74474 0.91754 0.90752 0.93113 0.91419 0.94969 0.96402 0.94573 0.93163 0.95122 0.89944 0.90746 0.94409 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.08 71.24 0.72 -0.35 16 2 C -0.02 -0.34 6.95 40.95 0.28 -0.06 16 3 C -0.06 -1.46 11.79 83.52 0.98 -0.47 16 4 N -0.53 -14.24 11.25 -200.31 -2.25 -16.49 16 5 C 0.18 3.76 12.56 180.26 2.26 6.03 16 6 N -0.44 -8.16 2.24 -518.61 -1.16 -9.32 16 7 C 0.09 0.95 6.28 85.63 0.54 1.49 16 8 C 0.50 9.93 7.90 87.66 0.69 10.62 16 9 O -0.57 -17.62 16.05 -3.04 -0.05 -17.67 16 10 N -0.69 -13.06 4.74 -439.32 -2.08 -15.14 16 11 C 0.15 3.92 3.30 45.67 0.15 4.07 16 12 H 0.08 2.51 7.38 -2.38 -0.02 2.49 16 13 C -0.12 -3.66 4.08 -10.32 -0.04 -3.70 16 14 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 15 C -0.10 -3.25 5.17 30.62 0.16 -3.09 16 16 C -0.13 -4.76 6.04 30.58 0.18 -4.58 16 17 C 0.19 8.54 4.00 86.47 0.35 8.89 16 18 N -0.58 -26.02 2.66 -679.53 -1.80 -27.83 16 19 C -0.26 -13.00 9.48 84.03 0.80 -12.20 16 20 H 0.07 3.25 7.84 -2.91 -0.02 3.22 16 21 C -0.04 -2.34 4.92 84.86 0.42 -1.93 16 22 N -0.93 -52.09 10.90 21.65 0.24 -51.85 16 23 Si 0.96 43.00 29.58 68.60 2.03 45.02 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 27 C 0.17 6.06 3.45 45.40 0.16 6.21 16 28 H 0.08 2.58 7.88 -2.39 -0.02 2.56 16 29 C -0.11 -3.42 1.34 -51.66 -0.07 -3.49 16 30 C -0.13 -4.62 7.38 71.98 0.53 -4.09 16 31 C -0.12 -3.24 8.90 71.98 0.64 -2.60 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.06 0.92 7.95 -2.39 -0.02 0.90 16 35 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 36 H 0.23 3.02 8.06 -2.91 -0.02 2.99 16 37 H 0.17 0.53 8.13 -2.39 -0.02 0.51 16 38 H 0.15 0.81 8.02 -2.39 -0.02 0.79 16 39 H 0.42 5.55 6.76 -92.71 -0.63 4.93 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.07 2.41 4.76 -2.38 -0.01 2.40 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 44 H 0.03 1.68 6.48 -2.39 -0.02 1.66 16 45 H 0.02 0.89 5.63 -2.38 -0.01 0.88 16 46 H 0.24 13.57 8.31 -92.71 -0.77 12.80 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.03 1.25 8.05 -2.39 -0.02 1.23 16 49 H 0.08 3.18 1.92 -2.39 0.00 3.17 16 50 H 0.07 1.45 5.99 -2.39 -0.01 1.43 16 51 H 0.04 1.23 8.14 -2.39 -0.02 1.22 16 52 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -73.41 396.84 3.97 -69.44 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.31 Total: 23.10 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 8.75 Total: 0.74 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -7.07 Total: -120.63 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.67 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -73.41 3.97 -69.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087296901.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.349 kcal (2) G-P(sol) polarization free energy of solvation -73.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds