Wall clock time and date at job start Wed Apr 1 2020 04:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35044 * 126.39534 * 2 1 4 4 N 1.30502 * 108.69557 * 180.26795 * 3 2 1 5 5 C 1.34128 * 109.25814 * 359.76316 * 4 3 2 6 6 C 1.34672 * 108.02154 * 0.02562 * 5 4 3 7 7 C 1.50692 * 126.59302 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47347 * 85.02030 * 7 6 5 9 9 O 1.21275 * 119.99828 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99749 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99784 * 180.02562 * 10 8 7 12 12 H 1.08997 * 113.22027 * 22.19598 * 11 10 8 13 13 C 1.50002 * 114.29132 * 249.22358 * 11 10 8 14 14 H 1.09001 * 112.50270 * 322.37837 * 13 11 10 15 15 C 1.51201 * 126.17243 * 104.77302 * 13 11 10 16 16 C 1.54094 * 106.19447 * 161.42942 * 15 13 11 17 17 C 1.52498 * 112.67185 * 304.56575 * 16 15 13 18 18 N 1.48408 * 111.87033 * 46.78490 * 17 16 15 19 19 C 1.36934 * 123.16479 * 128.18675 * 18 17 16 20 20 H 1.07998 * 120.00090 * 225.26607 * 19 18 17 21 21 C 1.38818 * 120.00371 * 45.27261 * 19 18 17 22 22 N 1.31619 * 120.00063 * 209.55315 * 21 19 18 23 23 Si 1.86804 * 119.99834 * 29.54496 * 21 19 18 24 24 H 1.48499 * 109.46695 * 84.79545 * 23 21 19 25 25 H 1.48503 * 109.46912 * 204.79325 * 23 21 19 26 26 H 1.48494 * 109.47102 * 324.79399 * 23 21 19 27 27 C 1.45383 * 113.66938 * 308.15895 * 18 17 16 28 28 H 1.08999 * 112.09427 * 301.17285 * 27 18 17 29 29 C 1.49962 * 126.67029 * 155.95026 * 27 18 17 30 30 C 1.52996 * 114.08517 * 334.32157 * 29 27 18 31 31 C 1.53004 * 114.08263 * 106.57030 * 29 27 18 32 32 H 1.08994 * 109.47582 * 270.11900 * 1 2 3 33 33 H 1.09005 * 109.47176 * 30.12820 * 1 2 3 34 34 H 1.09007 * 109.47011 * 150.11995 * 1 2 3 35 35 H 1.07999 * 125.65681 * 359.97438 * 3 2 1 36 36 H 1.07996 * 125.98795 * 180.02562 * 5 4 3 37 37 H 1.09006 * 109.46711 * 325.02111 * 7 6 5 38 38 H 1.09001 * 109.47345 * 205.02596 * 7 6 5 39 39 H 0.97003 * 120.00800 * 0.02562 * 10 8 7 40 40 H 1.09002 * 110.10362 * 280.59588 * 15 13 11 41 41 H 1.08996 * 110.10240 * 42.15046 * 15 13 11 42 42 H 1.08995 * 108.84693 * 183.73788 * 16 15 13 43 43 H 1.09006 * 108.84134 * 65.38263 * 16 15 13 44 44 H 1.08998 * 108.99795 * 286.17144 * 17 16 15 45 45 H 1.09006 * 109.00413 * 167.40251 * 17 16 15 46 46 H 0.96995 * 119.99672 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.47428 * 73.70363 * 30 29 27 48 48 H 1.09000 * 109.47123 * 193.70463 * 30 29 27 49 49 H 1.09004 * 109.47310 * 313.70245 * 30 29 27 50 50 H 1.09000 * 109.47068 * 59.99974 * 31 29 27 51 51 H 1.09003 * 109.46769 * 179.97438 * 31 29 27 52 52 H 1.08997 * 109.46901 * 299.99670 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 -0.0058 5 6 3.5460 -0.6505 -0.0044 6 6 2.2772 -1.1018 0.0019 7 6 1.8363 -2.5428 0.0051 8 6 1.8139 -3.0583 1.4210 9 8 2.1258 -2.3276 2.3373 10 7 1.4473 -4.3313 1.6689 11 6 1.4250 -4.8322 3.0455 12 1 1.3414 -4.0403 3.7897 13 6 2.4847 -5.8495 3.3492 14 1 2.6640 -6.5271 2.5144 15 6 3.7462 -5.6128 4.1484 16 6 4.2489 -7.0040 4.5801 17 6 3.1939 -7.8001 5.3409 18 7 1.8747 -7.7596 4.6622 19 6 1.1520 -8.8832 4.3617 20 1 0.6977 -8.9886 3.3877 21 6 1.0032 -9.8868 5.3092 22 7 0.8563 -11.1373 4.9258 23 14 1.0117 -9.4624 7.1284 24 1 -0.3532 -9.0543 7.5477 25 1 1.4356 -10.6506 7.9118 26 1 1.9592 -8.3452 7.3717 27 6 1.4217 -6.4146 4.3469 28 1 1.3363 -5.7915 5.2371 29 6 0.4499 -6.0256 3.2730 30 6 0.3844 -7.0101 2.1038 31 6 -0.9291 -5.6190 3.7965 32 1 -0.3634 0.0021 1.0276 33 1 -0.3634 0.8889 -0.5158 34 1 -0.3633 -0.8911 -0.5120 35 1 1.9335 2.1145 -0.0004 36 1 4.4368 -1.2611 -0.0078 37 1 2.5325 -3.1370 -0.5870 38 1 0.8375 -2.6182 -0.4249 39 1 1.1982 -4.9159 0.9360 40 1 4.4952 -5.1195 3.5288 41 1 3.5256 -5.0037 5.0249 42 1 5.1240 -6.8798 5.2179 43 1 4.5400 -7.5645 3.6917 44 1 3.0902 -7.3846 6.3432 45 1 3.5205 -8.8371 5.4202 46 1 0.7527 -11.8385 5.5878 47 1 -0.1440 -7.9108 2.4162 48 1 -0.1450 -6.5491 1.2699 49 1 1.3956 -7.2718 1.7920 50 1 -0.8269 -4.7621 4.4624 51 1 -1.5719 -5.3521 2.9575 52 1 -1.3709 -6.4527 4.3422 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087313654.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:22 Heat of formation + Delta-G solvation = 95.400410 kcal Electronic energy + Delta-G solvation = -31947.333937 eV Core-core repulsion = 27950.342692 eV Total energy + Delta-G solvation = -3996.991246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.25514 -41.08456 -38.95734 -35.49540 -34.24607 -33.38093 -33.03851 -32.21599 -30.84699 -29.51315 -27.51476 -27.29438 -27.17430 -25.80568 -24.51399 -22.34847 -21.62288 -21.40516 -20.26041 -19.94675 -19.57666 -18.41107 -17.25575 -17.17873 -16.68045 -15.81273 -15.66775 -15.47822 -14.97896 -14.51378 -14.21645 -14.05487 -13.94286 -13.86655 -13.49803 -13.39078 -13.21872 -13.14541 -12.96148 -12.82709 -12.75537 -12.54591 -12.34198 -12.05802 -11.70592 -11.68470 -11.46415 -11.20684 -11.04287 -10.70441 -10.49810 -10.45395 -10.30458 -10.10176 -10.07598 -9.86545 -9.71270 -9.62002 -9.58497 -9.00014 -8.67121 -8.47358 -8.30824 -6.51894 -6.08522 -3.50060 1.82059 2.55509 2.65803 3.02488 3.37878 3.38103 3.48501 3.53845 4.30737 4.38640 4.54009 4.55675 4.60682 4.68875 4.76164 4.79620 4.87457 5.01335 5.02940 5.10693 5.13199 5.24029 5.30890 5.50672 5.59625 5.61729 5.71569 5.81039 5.87420 5.96138 6.00951 6.05516 6.13834 6.15615 6.25151 6.35464 6.37610 6.45845 6.49630 6.55892 6.59485 6.60542 6.64579 6.79220 6.86757 6.91033 6.94662 7.01287 7.14020 7.61346 7.94299 8.00432 8.28300 8.45391 8.93733 9.67745 10.28657 11.06353 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021712 B = 0.002684 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.274093 B =10428.312937 C =10965.370252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.455 5.455 3 C 0.179 3.821 4 N -0.494 5.494 5 C -0.009 4.009 6 C -0.005 4.005 7 C -0.067 4.067 8 C 0.510 3.490 9 O -0.532 6.532 10 N -0.712 5.712 11 C 0.142 3.858 12 H 0.111 0.889 13 C -0.169 4.169 14 H 0.097 0.903 15 C -0.089 4.089 16 C -0.130 4.130 17 C 0.140 3.860 18 N -0.578 5.578 19 C -0.270 4.270 20 H 0.084 0.916 21 C 0.049 3.951 22 N -0.888 5.888 23 Si 0.849 3.151 24 H -0.288 1.288 25 H -0.299 1.299 26 H -0.258 1.258 27 C 0.147 3.853 28 H 0.050 0.950 29 C -0.061 4.061 30 C -0.125 4.125 31 C -0.133 4.133 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.203 0.797 36 H 0.167 0.833 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.399 0.601 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.024 0.976 45 H 0.063 0.937 46 H 0.263 0.737 47 H 0.083 0.917 48 H 0.037 0.963 49 H 0.064 0.936 50 H 0.049 0.951 51 H 0.047 0.953 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 17.944 -11.803 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.139 5.139 3 C -0.102 4.102 4 N -0.212 5.212 5 C -0.157 4.157 6 C -0.119 4.119 7 C -0.108 4.108 8 C 0.295 3.705 9 O -0.408 6.408 10 N -0.362 5.362 11 C 0.037 3.963 12 H 0.129 0.871 13 C -0.190 4.190 14 H 0.115 0.885 15 C -0.126 4.126 16 C -0.170 4.170 17 C 0.015 3.985 18 N -0.301 5.301 19 C -0.398 4.398 20 H 0.101 0.899 21 C -0.153 4.153 22 N -0.527 5.527 23 Si 0.677 3.323 24 H -0.215 1.215 25 H -0.226 1.226 26 H -0.182 1.182 27 C 0.039 3.961 28 H 0.067 0.933 29 C -0.062 4.062 30 C -0.182 4.182 31 C -0.190 4.190 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.220 0.780 36 H 0.184 0.816 37 H 0.134 0.866 38 H 0.115 0.885 39 H 0.234 0.766 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.102 0.898 48 H 0.056 0.944 49 H 0.083 0.917 50 H 0.068 0.932 51 H 0.066 0.934 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.482 18.731 -11.094 21.821 hybrid contribution -0.950 -0.751 0.940 1.532 sum -2.431 17.981 -10.155 20.793 Atomic orbital electron populations 1.22039 0.76869 1.04417 1.03875 1.45191 1.07424 1.06691 1.54569 1.24859 0.85678 0.93262 1.06445 1.70259 1.19383 1.11980 1.19532 1.21981 0.95592 0.91055 1.07100 1.20404 0.91315 0.88404 1.11807 1.20062 1.04076 0.90654 0.96039 1.20425 0.77276 0.82112 0.90681 1.90732 1.47266 1.56620 1.46197 1.46009 1.68255 1.12033 1.09924 1.22434 0.97178 0.93953 0.82743 0.87073 1.23412 0.95933 0.98722 1.00970 0.88506 1.21093 0.96559 0.96524 0.98459 1.21945 0.98413 0.96005 1.00597 1.21373 0.84848 0.98588 0.93644 1.43997 1.15108 1.00250 1.70792 1.18750 1.30016 0.93446 0.97578 0.89893 1.25782 0.96639 0.95183 0.97733 1.69988 1.49102 0.99198 1.34372 0.87295 0.78791 0.78155 0.88050 1.21517 1.22580 1.18242 1.21474 0.93180 0.88706 0.92770 0.93256 1.21810 0.93554 0.93981 0.96884 1.21737 1.02506 0.99081 0.94830 1.21694 0.95941 1.01185 1.00216 0.90352 0.89345 0.89805 0.78008 0.81610 0.86603 0.88535 0.76592 0.93541 0.92805 0.93055 0.92547 0.95828 0.91840 0.92729 0.89786 0.94369 0.91735 0.93219 0.93380 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 11.00 59.85 0.66 1.04 16 2 N -0.46 -4.35 3.15 -121.36 -0.38 -4.73 16 3 C 0.18 1.86 12.56 -90.37 -1.14 0.72 16 4 N -0.49 -6.68 11.25 -14.67 -0.16 -6.85 16 5 C -0.01 -0.12 11.79 -17.81 -0.21 -0.33 16 6 C 0.00 -0.05 5.45 -81.60 -0.44 -0.50 16 7 C -0.07 -0.57 6.04 -29.04 -0.18 -0.75 16 8 C 0.51 6.26 7.82 -10.99 -0.09 6.18 16 9 O -0.53 -8.97 15.63 5.56 0.09 -8.88 16 10 N -0.71 -8.24 5.33 -57.66 -0.31 -8.55 16 11 C 0.14 2.05 3.51 -71.83 -0.25 1.80 16 12 H 0.11 1.80 7.39 -51.93 -0.38 1.42 16 13 C -0.17 -2.75 2.87 -95.82 -0.28 -3.03 16 14 H 0.10 1.66 5.87 -51.93 -0.30 1.36 16 15 C -0.09 -1.46 6.12 -27.07 -0.17 -1.62 16 16 C -0.13 -2.26 5.90 -26.42 -0.16 -2.42 16 17 C 0.14 2.92 4.59 -3.25 -0.01 2.91 16 18 N -0.58 -12.75 2.28 -169.41 -0.39 -13.14 16 19 C -0.27 -6.89 9.31 -15.06 -0.14 -7.03 16 20 H 0.08 2.21 5.21 -52.49 -0.27 1.94 16 21 C 0.05 1.34 5.10 -17.43 -0.09 1.26 16 22 N -0.89 -25.75 13.97 55.49 0.78 -24.98 16 23 Si 0.85 21.02 27.50 -169.99 -4.67 16.35 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 26 H -0.26 -6.12 4.96 56.52 0.28 -5.84 16 27 C 0.15 2.73 3.05 -72.13 -0.22 2.51 16 28 H 0.05 0.97 7.97 -51.93 -0.41 0.55 16 29 C -0.06 -0.94 1.36 -159.15 -0.22 -1.16 16 30 C -0.12 -1.88 6.99 37.16 0.26 -1.62 16 31 C -0.13 -1.94 9.29 37.16 0.35 -1.59 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.34 7.11 -51.93 -0.37 -0.03 16 35 H 0.20 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.17 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.57 7.09 -51.93 -0.37 0.20 16 39 H 0.40 3.70 7.30 -40.82 -0.30 3.40 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.51 6.50 -51.93 -0.34 0.17 16 45 H 0.06 1.42 7.44 -51.93 -0.39 1.04 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.08 1.52 6.00 -51.93 -0.31 1.21 16 48 H 0.04 0.45 7.61 -51.93 -0.40 0.05 16 49 H 0.06 1.02 5.90 -51.93 -0.31 0.72 16 50 H 0.05 0.69 8.05 -51.93 -0.42 0.27 16 51 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -34.07 398.08 -9.84 -43.91 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -8.47 Total: 4.50 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.32 Total: -3.63 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.47 Total: -58.24 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.07 -9.84 -43.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087313654.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.314 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds