Wall clock time and date at job start Wed Apr 1 2020 04:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35038 * 126.40030 * 2 1 4 4 N 1.30496 * 108.70084 * 180.27286 * 3 2 1 5 5 C 1.34128 * 109.25640 * 359.76182 * 4 3 2 6 6 C 1.34668 * 108.02118 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.59340 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47368 * 85.01827 * 7 6 5 9 9 O 1.21282 * 119.99862 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99784 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00136 * 179.97438 * 10 8 7 12 12 H 1.09009 * 113.21774 * 28.30818 * 11 10 8 13 13 C 1.49996 * 114.13339 * 255.50152 * 11 10 8 14 14 H 1.08997 * 111.89470 * 170.19038 * 13 11 10 15 15 C 1.51208 * 126.17219 * 27.76287 * 13 11 10 16 16 C 1.54091 * 106.19315 * 198.56783 * 15 13 11 17 17 C 1.52045 * 112.72807 * 55.27275 * 16 15 13 18 18 N 1.48400 * 112.13489 * 313.50644 * 17 16 15 19 19 C 1.36937 * 123.16290 * 231.77547 * 18 17 16 20 20 H 1.07996 * 120.00240 * 214.33371 * 19 18 17 21 21 C 1.38814 * 120.00059 * 34.06054 * 19 18 17 22 22 N 1.31617 * 119.99989 * 17.08556 * 21 19 18 23 23 Si 1.86800 * 119.99768 * 197.09034 * 21 19 18 24 24 H 1.48496 * 109.47493 * 60.00096 * 23 21 19 25 25 H 1.48500 * 109.46897 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47191 * 299.99482 * 23 21 19 27 27 C 1.45381 * 113.66993 * 51.50111 * 18 17 16 28 28 H 1.08999 * 112.08745 * 60.03994 * 27 18 17 29 29 C 1.49970 * 126.66795 * 205.24309 * 27 18 17 30 30 C 1.52995 * 114.08767 * 253.26629 * 29 27 18 31 31 C 1.53000 * 114.08037 * 25.68925 * 29 27 18 32 32 H 1.09000 * 109.47089 * 270.11885 * 1 2 3 33 33 H 1.09001 * 109.47426 * 30.12238 * 1 2 3 34 34 H 1.09004 * 109.47633 * 150.12147 * 1 2 3 35 35 H 1.07998 * 125.64821 * 359.97438 * 3 2 1 36 36 H 1.07997 * 125.98941 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.46703 * 325.01607 * 7 6 5 38 38 H 1.08994 * 109.46859 * 205.02433 * 7 6 5 39 39 H 0.97002 * 119.99837 * 0.02562 * 10 8 7 40 40 H 1.08996 * 110.10360 * 317.74228 * 15 13 11 41 41 H 1.09003 * 110.10082 * 79.40594 * 15 13 11 42 42 H 1.09003 * 108.84408 * 176.26096 * 16 15 13 43 43 H 1.09001 * 108.84780 * 294.72479 * 16 15 13 44 44 H 1.08998 * 108.91587 * 192.77332 * 17 16 15 45 45 H 1.09002 * 108.81577 * 74.16334 * 17 16 15 46 46 H 0.97000 * 119.99859 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.47084 * 60.00295 * 30 29 27 48 48 H 1.08997 * 109.46805 * 180.02562 * 30 29 27 49 49 H 1.08998 * 109.46925 * 300.00218 * 30 29 27 50 50 H 1.09000 * 109.47132 * 66.16527 * 31 29 27 51 51 H 1.09003 * 109.46929 * 186.16041 * 31 29 27 52 52 H 1.08997 * 109.47636 * 306.16353 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5095 0.6902 -0.0059 5 6 3.5460 -0.6506 -0.0046 6 6 2.2771 -1.1019 0.0019 7 6 1.8362 -2.5429 0.0050 8 6 1.8139 -3.0584 1.4209 9 8 2.1251 -2.3275 2.3373 10 7 1.4473 -4.3314 1.6688 11 6 1.4262 -4.8328 3.0452 12 1 1.2375 -4.0535 3.7836 13 6 2.5742 -5.7358 3.3866 14 1 2.6199 -5.9491 4.4545 15 6 3.9485 -5.7093 2.7565 16 6 4.5928 -7.0727 3.0732 17 6 3.7412 -8.2457 2.6141 18 7 2.3168 -8.0870 2.9992 19 6 1.6091 -9.0515 3.6656 20 1 0.5574 -9.1875 3.4615 21 6 2.2448 -9.8581 4.5996 22 7 3.4105 -9.4993 5.0941 23 14 1.4457 -11.4528 5.1542 24 1 1.2534 -12.3441 3.9822 25 1 2.3203 -12.1251 6.1484 26 1 0.1284 -11.1574 5.7729 27 6 1.7453 -6.8087 2.6080 28 1 1.7804 -6.6571 1.5292 29 6 0.5844 -6.1118 3.2528 30 6 -0.7031 -6.1491 2.4273 31 6 0.3724 -6.4812 4.7223 32 1 -0.3633 0.0021 1.0277 33 1 -0.3634 0.8889 -0.5157 34 1 -0.3634 -0.8911 -0.5119 35 1 1.9334 2.1143 -0.0004 36 1 4.4367 -1.2613 -0.0080 37 1 2.5322 -3.1371 -0.5872 38 1 0.8374 -2.6181 -0.4249 39 1 1.1981 -4.9159 0.9358 40 1 3.8637 -5.5763 1.6780 41 1 4.5433 -4.9046 3.1888 42 1 5.5637 -7.1262 2.5806 43 1 4.7403 -7.1509 4.1503 44 1 4.1298 -9.1608 3.0609 45 1 3.8086 -8.3257 1.5291 46 1 3.8549 -10.0631 5.7464 47 1 -1.0008 -7.1851 2.2650 48 1 -1.4935 -5.6233 2.9629 49 1 -0.5323 -5.6653 1.4656 50 1 1.2149 -6.1209 5.3127 51 1 -0.5474 -6.0212 5.0835 52 1 0.2987 -7.5644 4.8178 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087313657.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:34 Heat of formation + Delta-G solvation = 101.210609 kcal Electronic energy + Delta-G solvation = -32302.779362 eV Core-core repulsion = 28306.040065 eV Total energy + Delta-G solvation = -3996.739297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.21097 -41.18484 -38.77064 -35.27876 -34.20226 -33.29844 -32.84191 -32.12777 -30.26448 -29.30207 -27.50130 -27.15464 -26.77551 -25.74568 -24.48434 -22.34530 -21.57681 -21.34215 -20.47079 -19.84690 -19.02488 -18.18347 -17.18244 -17.13149 -16.65722 -15.66726 -15.47926 -15.31400 -14.79103 -14.38041 -14.10937 -13.90231 -13.86111 -13.70339 -13.68797 -13.27948 -13.14747 -13.07519 -12.79269 -12.70206 -12.54484 -12.44791 -12.20444 -11.94409 -11.52186 -11.25117 -11.16922 -10.99202 -10.89740 -10.66664 -10.42980 -10.28723 -10.16065 -10.05374 -9.87572 -9.80886 -9.62760 -9.49972 -9.28714 -8.82370 -8.60932 -8.42339 -8.40404 -6.49576 -5.80574 -3.25870 1.86544 2.60155 2.73179 3.06673 3.34551 3.39238 3.41559 3.42847 4.35411 4.42393 4.45810 4.60057 4.72499 4.81142 4.85531 4.90177 5.00618 5.06024 5.17701 5.24226 5.31848 5.36423 5.46000 5.59446 5.67275 5.88247 5.91841 5.94964 6.04946 6.11159 6.14953 6.20240 6.35023 6.38125 6.38657 6.51894 6.59995 6.63634 6.65423 6.70538 6.75424 6.83026 6.99824 7.05988 7.11310 7.16583 7.31594 7.46644 7.63199 7.65815 7.77232 7.99191 8.36122 8.45924 9.13768 9.79462 10.50126 11.26633 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022484 B = 0.002778 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.011715 B =10075.621115 C =10789.245675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.456 5.456 3 C 0.179 3.821 4 N -0.494 5.494 5 C -0.008 4.008 6 C -0.004 4.004 7 C -0.066 4.066 8 C 0.513 3.487 9 O -0.529 6.529 10 N -0.702 5.702 11 C 0.136 3.864 12 H 0.090 0.910 13 C -0.166 4.166 14 H 0.105 0.895 15 C -0.083 4.083 16 C -0.124 4.124 17 C 0.164 3.836 18 N -0.569 5.569 19 C -0.243 4.243 20 H 0.062 0.938 21 C 0.009 3.991 22 N -0.890 5.890 23 Si 0.894 3.106 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.145 3.855 28 H 0.045 0.955 29 C -0.061 4.061 30 C -0.133 4.133 31 C -0.123 4.123 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.203 0.797 36 H 0.167 0.833 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.399 0.601 40 H 0.044 0.956 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.068 0.932 44 H 0.085 0.915 45 H -0.006 1.006 46 H 0.253 0.747 47 H 0.060 0.940 48 H 0.049 0.951 49 H 0.045 0.955 50 H 0.058 0.942 51 H 0.035 0.965 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.562 14.376 -11.551 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.139 5.139 3 C -0.103 4.103 4 N -0.211 5.211 5 C -0.156 4.156 6 C -0.119 4.119 7 C -0.107 4.107 8 C 0.298 3.702 9 O -0.404 6.404 10 N -0.354 5.354 11 C 0.031 3.969 12 H 0.108 0.892 13 C -0.187 4.187 14 H 0.123 0.877 15 C -0.120 4.120 16 C -0.163 4.163 17 C 0.039 3.961 18 N -0.291 5.291 19 C -0.372 4.372 20 H 0.079 0.921 21 C -0.190 4.190 22 N -0.533 5.533 23 Si 0.724 3.276 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.209 1.209 27 C 0.037 3.963 28 H 0.063 0.937 29 C -0.062 4.062 30 C -0.191 4.191 31 C -0.180 4.180 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.220 0.780 36 H 0.184 0.816 37 H 0.134 0.866 38 H 0.114 0.886 39 H 0.234 0.766 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.012 0.988 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.077 0.923 51 H 0.054 0.946 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.709 15.273 -10.742 19.841 hybrid contribution -1.140 -1.670 0.081 2.023 sum -7.848 13.603 -10.661 18.981 Atomic orbital electron populations 1.22030 0.76921 1.04374 1.03844 1.45183 1.07395 1.06695 1.54642 1.24851 0.85693 0.93242 1.06486 1.70260 1.19365 1.11990 1.19519 1.21994 0.95627 0.91034 1.06953 1.20392 0.91316 0.88359 1.11830 1.20039 1.04070 0.90676 0.95923 1.20349 0.77339 0.81848 0.90688 1.90737 1.46993 1.56571 1.46148 1.45686 1.68448 1.12037 1.09180 1.21371 0.98189 0.94864 0.82511 0.89185 1.23350 0.94288 0.98819 1.02292 0.87694 1.21004 0.95636 0.97006 0.98387 1.21739 0.97220 0.94827 1.02473 1.20650 0.83964 0.97944 0.93511 1.43741 1.07329 1.12790 1.65222 1.18783 0.93860 1.09694 1.14871 0.92065 1.25093 0.97649 0.99993 0.96311 1.69973 1.16691 1.36742 1.29882 0.86522 0.78685 0.84365 0.78053 1.21150 1.21753 1.20894 1.21750 0.93344 0.87253 0.93990 0.93727 1.21612 0.93282 0.93642 0.97698 1.21700 0.96955 1.01752 0.98643 1.21711 0.99663 1.04943 0.91719 0.90377 0.89376 0.89830 0.78026 0.81562 0.86553 0.88557 0.76569 0.93773 0.94143 0.94244 0.91341 0.89664 0.98763 0.93677 0.92104 0.93223 0.93572 0.92308 0.94573 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 11.00 59.85 0.66 1.07 16 2 N -0.46 -4.58 3.15 -121.37 -0.38 -4.96 16 3 C 0.18 1.94 12.56 -90.38 -1.14 0.80 16 4 N -0.49 -6.96 11.25 -14.67 -0.17 -7.13 16 5 C -0.01 -0.11 11.79 -17.81 -0.21 -0.32 16 6 C 0.00 -0.05 5.45 -81.60 -0.44 -0.50 16 7 C -0.07 -0.62 6.04 -29.04 -0.18 -0.79 16 8 C 0.51 6.82 7.82 -10.99 -0.09 6.73 16 9 O -0.53 -9.48 15.71 5.56 0.09 -9.40 16 10 N -0.70 -9.02 4.25 -58.37 -0.25 -9.27 16 11 C 0.14 2.17 3.81 -72.54 -0.28 1.90 16 12 H 0.09 1.58 7.60 -51.92 -0.39 1.18 16 13 C -0.17 -3.11 2.98 -98.15 -0.29 -3.40 16 14 H 0.11 2.29 5.85 -51.93 -0.30 1.99 16 15 C -0.08 -1.53 5.94 -27.06 -0.16 -1.69 16 16 C -0.12 -2.52 5.88 -26.65 -0.16 -2.68 16 17 C 0.16 3.70 5.69 -3.48 -0.02 3.68 16 18 N -0.57 -12.99 2.87 -169.71 -0.49 -13.48 16 19 C -0.24 -6.06 7.31 -15.06 -0.11 -6.17 16 20 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 21 C 0.01 0.25 5.02 -17.43 -0.09 0.16 16 22 N -0.89 -24.14 11.52 55.49 0.64 -23.50 16 23 Si 0.89 20.67 29.59 -169.99 -5.03 15.64 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.14 2.71 2.99 -72.15 -0.22 2.50 16 28 H 0.05 0.80 6.58 -51.93 -0.34 0.46 16 29 C -0.06 -1.01 1.36 -162.15 -0.22 -1.23 16 30 C -0.13 -1.82 9.20 37.16 0.34 -1.48 16 31 C -0.12 -2.23 8.68 37.16 0.32 -1.91 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.37 7.11 -51.93 -0.37 0.00 16 35 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 0.62 7.09 -51.93 -0.37 0.26 16 39 H 0.40 4.29 6.27 -40.82 -0.26 4.03 16 40 H 0.04 0.76 7.98 -51.93 -0.41 0.35 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 44 H 0.09 2.17 6.06 -51.93 -0.31 1.86 16 45 H -0.01 -0.12 8.14 -51.93 -0.42 -0.54 16 46 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 49 H 0.05 0.53 6.36 -51.93 -0.33 0.20 16 50 H 0.06 1.14 6.05 -51.93 -0.31 0.82 16 51 H 0.04 0.56 8.05 -51.93 -0.42 0.14 16 52 H 0.10 2.01 5.63 -51.93 -0.29 1.72 16 LS Contribution 399.10 15.07 6.01 6.01 Total: -1.00 -32.56 399.10 -10.14 -42.70 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -8.30 Total: 6.69 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.27 Total: -3.32 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.64 Total: -58.33 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.56 -10.14 -42.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087313657.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.911 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds