Wall clock time and date at job start Wed Apr 1 2020 04:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35038 * 126.40030 * 2 1 4 4 N 1.30496 * 108.70084 * 180.27286 * 3 2 1 5 5 C 1.34128 * 109.25640 * 359.76182 * 4 3 2 6 6 C 1.34668 * 108.02118 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.59340 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47368 * 85.01827 * 7 6 5 9 9 O 1.21282 * 119.99862 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99784 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00136 * 179.97438 * 10 8 7 12 12 H 1.09009 * 113.21774 * 28.30818 * 11 10 8 13 13 C 1.49996 * 114.13339 * 255.50152 * 11 10 8 14 14 H 1.08997 * 111.89470 * 170.19038 * 13 11 10 15 15 C 1.51208 * 126.17219 * 27.76287 * 13 11 10 16 16 C 1.54091 * 106.19315 * 198.56783 * 15 13 11 17 17 C 1.52045 * 112.72807 * 55.27275 * 16 15 13 18 18 N 1.48400 * 112.13489 * 313.50644 * 17 16 15 19 19 C 1.36937 * 123.16290 * 231.77547 * 18 17 16 20 20 H 1.07996 * 120.00240 * 214.33371 * 19 18 17 21 21 C 1.38814 * 120.00059 * 34.06054 * 19 18 17 22 22 N 1.31617 * 119.99989 * 17.08556 * 21 19 18 23 23 Si 1.86800 * 119.99768 * 197.09034 * 21 19 18 24 24 H 1.48496 * 109.47493 * 60.00096 * 23 21 19 25 25 H 1.48500 * 109.46897 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47191 * 299.99482 * 23 21 19 27 27 C 1.45381 * 113.66993 * 51.50111 * 18 17 16 28 28 H 1.08999 * 112.08745 * 60.03994 * 27 18 17 29 29 C 1.49970 * 126.66795 * 205.24309 * 27 18 17 30 30 C 1.52995 * 114.08767 * 253.26629 * 29 27 18 31 31 C 1.53000 * 114.08037 * 25.68925 * 29 27 18 32 32 H 1.09000 * 109.47089 * 270.11885 * 1 2 3 33 33 H 1.09001 * 109.47426 * 30.12238 * 1 2 3 34 34 H 1.09004 * 109.47633 * 150.12147 * 1 2 3 35 35 H 1.07998 * 125.64821 * 359.97438 * 3 2 1 36 36 H 1.07997 * 125.98941 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.46703 * 325.01607 * 7 6 5 38 38 H 1.08994 * 109.46859 * 205.02433 * 7 6 5 39 39 H 0.97002 * 119.99837 * 0.02562 * 10 8 7 40 40 H 1.08996 * 110.10360 * 317.74228 * 15 13 11 41 41 H 1.09003 * 110.10082 * 79.40594 * 15 13 11 42 42 H 1.09003 * 108.84408 * 176.26096 * 16 15 13 43 43 H 1.09001 * 108.84780 * 294.72479 * 16 15 13 44 44 H 1.08998 * 108.91587 * 192.77332 * 17 16 15 45 45 H 1.09002 * 108.81577 * 74.16334 * 17 16 15 46 46 H 0.97000 * 119.99859 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.47084 * 60.00295 * 30 29 27 48 48 H 1.08997 * 109.46805 * 180.02562 * 30 29 27 49 49 H 1.08998 * 109.46925 * 300.00218 * 30 29 27 50 50 H 1.09000 * 109.47132 * 66.16527 * 31 29 27 51 51 H 1.09003 * 109.46929 * 186.16041 * 31 29 27 52 52 H 1.08997 * 109.47636 * 306.16353 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5095 0.6902 -0.0059 5 6 3.5460 -0.6506 -0.0046 6 6 2.2771 -1.1019 0.0019 7 6 1.8362 -2.5429 0.0050 8 6 1.8139 -3.0584 1.4209 9 8 2.1251 -2.3275 2.3373 10 7 1.4473 -4.3314 1.6688 11 6 1.4262 -4.8328 3.0452 12 1 1.2375 -4.0535 3.7836 13 6 2.5742 -5.7358 3.3866 14 1 2.6199 -5.9491 4.4545 15 6 3.9485 -5.7093 2.7565 16 6 4.5928 -7.0727 3.0732 17 6 3.7412 -8.2457 2.6141 18 7 2.3168 -8.0870 2.9992 19 6 1.6091 -9.0515 3.6656 20 1 0.5574 -9.1875 3.4615 21 6 2.2448 -9.8581 4.5996 22 7 3.4105 -9.4993 5.0941 23 14 1.4457 -11.4528 5.1542 24 1 1.2534 -12.3441 3.9822 25 1 2.3203 -12.1251 6.1484 26 1 0.1284 -11.1574 5.7729 27 6 1.7453 -6.8087 2.6080 28 1 1.7804 -6.6571 1.5292 29 6 0.5844 -6.1118 3.2528 30 6 -0.7031 -6.1491 2.4273 31 6 0.3724 -6.4812 4.7223 32 1 -0.3633 0.0021 1.0277 33 1 -0.3634 0.8889 -0.5157 34 1 -0.3634 -0.8911 -0.5119 35 1 1.9334 2.1143 -0.0004 36 1 4.4367 -1.2613 -0.0080 37 1 2.5322 -3.1371 -0.5872 38 1 0.8374 -2.6181 -0.4249 39 1 1.1981 -4.9159 0.9358 40 1 3.8637 -5.5763 1.6780 41 1 4.5433 -4.9046 3.1888 42 1 5.5637 -7.1262 2.5806 43 1 4.7403 -7.1509 4.1503 44 1 4.1298 -9.1608 3.0609 45 1 3.8086 -8.3257 1.5291 46 1 3.8549 -10.0631 5.7464 47 1 -1.0008 -7.1851 2.2650 48 1 -1.4935 -5.6233 2.9629 49 1 -0.5323 -5.6653 1.4656 50 1 1.2149 -6.1209 5.3127 51 1 -0.5474 -6.0212 5.0835 52 1 0.2987 -7.5644 4.8178 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087313657.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:32 Heat of formation + Delta-G solvation = 82.399384 kcal Electronic energy + Delta-G solvation = -32303.595078 eV Core-core repulsion = 28306.040065 eV Total energy + Delta-G solvation = -3997.555013 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.01893 -42.57222 -39.95132 -36.92036 -34.92323 -34.70486 -34.38466 -33.02861 -32.05098 -30.70705 -28.55638 -28.03817 -27.72659 -27.42304 -26.03630 -23.93320 -22.62414 -22.32823 -21.96968 -20.78318 -20.46577 -19.60305 -18.47897 -18.15551 -17.88968 -16.89540 -16.42044 -16.35998 -16.32839 -15.73146 -15.50850 -15.34733 -15.16980 -14.93074 -14.68571 -14.55622 -14.25863 -14.07089 -13.92789 -13.88388 -13.70120 -13.45538 -13.27700 -13.15053 -12.96328 -12.93049 -12.70738 -12.64518 -12.55053 -12.24320 -12.13015 -12.03302 -11.68368 -11.43068 -11.19616 -10.96867 -10.89449 -10.82401 -10.54511 -10.42807 -10.21014 -9.86890 -9.27260 -8.35602 -7.76824 -5.22538 1.05100 1.48134 1.51057 1.55517 1.69701 1.96299 2.15519 2.38287 2.56005 3.31255 3.42956 3.56587 3.60702 3.80282 3.92896 3.97193 4.00114 4.03157 4.15802 4.19100 4.32430 4.38877 4.43947 4.51601 4.54038 4.62082 4.65446 4.70350 4.76046 4.78689 4.82617 4.88097 4.93927 5.01126 5.08624 5.14502 5.20135 5.22911 5.29902 5.36477 5.42913 5.45142 5.59241 5.65389 5.69503 5.74298 5.79097 5.82032 5.90875 6.36044 6.53080 6.63875 7.16741 7.20559 7.34853 7.91706 8.59858 9.28203 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022484 B = 0.002778 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.011715 B =10075.621115 C =10789.245675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.455 5.455 3 C 0.178 3.822 4 N -0.540 5.540 5 C -0.045 4.045 6 C -0.008 4.008 7 C -0.056 4.056 8 C 0.516 3.484 9 O -0.578 6.578 10 N -0.689 5.689 11 C 0.159 3.841 12 H 0.075 0.925 13 C -0.168 4.168 14 H 0.064 0.936 15 C -0.073 4.073 16 C -0.114 4.114 17 C 0.166 3.834 18 N -0.584 5.584 19 C -0.231 4.231 20 H 0.063 0.937 21 C -0.042 4.042 22 N -0.920 5.920 23 Si 0.947 3.053 24 H -0.282 1.282 25 H -0.303 1.303 26 H -0.277 1.277 27 C 0.139 3.861 28 H 0.070 0.930 29 C -0.057 4.057 30 C -0.127 4.127 31 C -0.119 4.119 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.237 0.763 36 H 0.162 0.838 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.414 0.586 40 H 0.067 0.933 41 H 0.035 0.965 42 H 0.057 0.943 43 H 0.029 0.971 44 H 0.050 0.950 45 H 0.012 0.988 46 H 0.244 0.756 47 H 0.051 0.949 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.034 0.966 51 H 0.061 0.939 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.366 15.638 -14.526 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.137 5.137 3 C -0.105 4.105 4 N -0.258 5.258 5 C -0.193 4.193 6 C -0.123 4.123 7 C -0.096 4.096 8 C 0.304 3.696 9 O -0.457 6.457 10 N -0.342 5.342 11 C 0.052 3.948 12 H 0.094 0.906 13 C -0.190 4.190 14 H 0.083 0.917 15 C -0.111 4.111 16 C -0.153 4.153 17 C 0.041 3.959 18 N -0.306 5.306 19 C -0.361 4.361 20 H 0.081 0.919 21 C -0.238 4.238 22 N -0.565 5.565 23 Si 0.777 3.223 24 H -0.208 1.208 25 H -0.230 1.230 26 H -0.203 1.203 27 C 0.032 3.968 28 H 0.087 0.913 29 C -0.058 4.058 30 C -0.184 4.184 31 C -0.176 4.176 32 H 0.091 0.909 33 H 0.135 0.865 34 H 0.121 0.879 35 H 0.253 0.747 36 H 0.179 0.821 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.253 0.747 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.029 0.971 46 H 0.053 0.947 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.053 0.947 51 H 0.080 0.920 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.563 16.527 -13.765 23.539 hybrid contribution -0.273 -1.983 1.017 2.245 sum -9.836 14.543 -12.749 21.698 Atomic orbital electron populations 1.22370 0.74266 1.06905 1.04276 1.45453 1.08975 1.05903 1.53395 1.25535 0.85129 0.94872 1.04926 1.70184 1.21632 1.12606 1.21428 1.22181 0.96785 0.91346 1.08952 1.20658 0.91019 0.89798 1.10872 1.20113 1.07080 0.89225 0.93207 1.21017 0.75631 0.81129 0.91828 1.90738 1.49029 1.57798 1.48141 1.45515 1.68286 1.12371 1.08034 1.20924 0.95865 0.93821 0.84189 0.90643 1.23214 0.95224 1.00412 1.00100 0.91739 1.20914 0.95223 0.95334 0.99621 1.21602 0.98113 0.95528 1.00062 1.20566 0.84195 0.97170 0.93994 1.43927 1.07538 1.14092 1.65083 1.18971 0.93866 1.09553 1.13743 0.91944 1.25678 0.98347 1.02592 0.97184 1.70131 1.18104 1.37406 1.30896 0.85660 0.77810 0.81519 0.77330 1.20847 1.22960 1.20266 1.22059 0.94592 0.84996 0.95126 0.91277 1.21528 0.94554 0.93034 0.96721 1.21666 0.95295 1.01876 0.99590 1.21592 0.99947 1.02829 0.93257 0.90873 0.86518 0.87852 0.74688 0.82052 0.84095 0.84500 0.74702 0.91414 0.94616 0.92389 0.95165 0.93143 0.97060 0.94727 0.92945 0.91745 0.90613 0.94727 0.92042 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 11.00 127.77 1.41 1.88 16 2 N -0.46 -7.82 3.15 -537.90 -1.70 -9.52 16 3 C 0.18 3.52 12.56 180.27 2.26 5.78 16 4 N -0.54 -15.01 11.25 -200.32 -2.25 -17.27 16 5 C -0.04 -1.19 11.79 83.52 0.98 -0.21 16 6 C -0.01 -0.16 5.45 40.95 0.22 0.07 16 7 C -0.06 -0.81 6.04 29.10 0.18 -0.63 16 8 C 0.52 12.09 7.82 87.66 0.69 12.77 16 9 O -0.58 -19.90 15.71 -3.04 -0.05 -19.95 16 10 N -0.69 -15.15 4.25 -456.96 -1.94 -17.10 16 11 C 0.16 4.79 3.81 42.01 0.16 4.95 16 12 H 0.08 2.58 7.60 -2.38 -0.02 2.56 16 13 C -0.17 -6.25 2.98 -15.67 -0.05 -6.30 16 14 H 0.06 2.96 5.85 -2.39 -0.01 2.95 16 15 C -0.07 -2.66 5.94 30.38 0.18 -2.48 16 16 C -0.11 -4.73 5.88 30.65 0.18 -4.55 16 17 C 0.17 7.52 5.69 85.70 0.49 8.01 16 18 N -0.58 -26.68 2.87 -690.84 -1.99 -28.67 16 19 C -0.23 -11.64 7.31 84.03 0.61 -11.02 16 20 H 0.06 3.10 7.65 -2.91 -0.02 3.08 16 21 C -0.04 -2.21 5.02 84.86 0.43 -1.78 16 22 N -0.92 -52.26 11.52 21.65 0.25 -52.02 16 23 Si 0.95 43.46 29.59 68.60 2.03 45.49 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 27 C 0.14 5.01 2.99 42.86 0.13 5.14 16 28 H 0.07 2.20 6.58 -2.39 -0.02 2.18 16 29 C -0.06 -1.78 1.36 -57.13 -0.08 -1.86 16 30 C -0.13 -2.98 9.20 71.98 0.66 -2.32 16 31 C -0.12 -4.32 8.68 71.98 0.62 -3.70 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.10 0.37 7.11 -2.38 -0.02 0.36 16 35 H 0.24 2.53 8.06 -2.91 -0.02 2.50 16 36 H 0.16 4.09 8.06 -2.91 -0.02 4.06 16 37 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.14 0.91 7.09 -2.39 -0.02 0.89 16 39 H 0.41 6.68 6.27 -92.71 -0.58 6.10 16 40 H 0.07 2.15 7.98 -2.39 -0.02 2.13 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.05 2.65 6.06 -2.39 -0.01 2.64 16 45 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.24 13.78 8.31 -92.71 -0.77 13.01 16 47 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.06 1.35 8.08 -2.39 -0.02 1.34 16 49 H 0.08 1.32 6.36 -2.39 -0.02 1.31 16 50 H 0.03 1.39 6.05 -2.39 -0.01 1.38 16 51 H 0.06 1.86 8.05 -2.39 -0.02 1.85 16 52 H 0.06 2.78 5.63 -2.39 -0.01 2.76 16 Total: -1.00 -76.26 399.10 3.78 -72.48 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.35 Total: 22.80 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 9.08 Total: 3.74 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -7.63 Total: -124.57 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.05 Total: -19.95 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -76.26 3.78 -72.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087313657.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.881 kcal (2) G-P(sol) polarization free energy of solvation -76.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds