Wall clock time and date at job start Wed Apr 1 2020 03:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30843 * 125.89496 * 2 1 4 4 N 1.40087 * 108.20043 * 179.97438 * 3 2 1 5 5 H 0.97001 * 126.03262 * 180.02562 * 4 3 2 6 6 C 1.34941 * 107.92813 * 359.75890 * 4 3 2 7 7 C 1.50707 * 126.12720 * 180.24284 * 6 4 3 8 8 C 1.35316 * 107.74616 * 0.38797 * 6 4 3 9 9 C 1.50703 * 126.04068 * 179.87373 * 8 6 4 10 10 H 1.09000 * 109.46722 * 359.71815 * 9 8 6 11 11 C 1.53001 * 109.47170 * 119.71704 * 9 8 6 12 12 C 1.50701 * 109.47123 * 239.71699 * 9 8 6 13 13 O 1.21273 * 120.00060 * 255.31191 * 12 9 8 14 14 N 1.34783 * 119.99922 * 75.30798 * 12 9 8 15 15 C 1.47640 * 125.73160 * 184.94355 * 14 12 9 16 16 C 1.55914 * 104.41922 * 155.04083 * 15 14 12 17 17 H 1.08994 * 113.52653 * 159.12144 * 16 15 14 18 18 C 1.53066 * 106.18512 * 283.23351 * 16 15 14 19 19 C 1.52776 * 110.81573 * 163.41134 * 18 16 15 20 20 N 1.47200 * 107.80488 * 302.27119 * 19 18 16 21 21 C 1.36936 * 121.32752 * 237.95229 * 20 19 18 22 22 H 1.08001 * 119.99905 * 26.54116 * 21 20 19 23 23 C 1.38806 * 119.99979 * 206.54865 * 21 20 19 24 24 N 1.31614 * 120.00243 * 15.51413 * 23 21 20 25 25 Si 1.86807 * 119.99979 * 195.51757 * 23 21 20 26 26 H 1.48502 * 109.47153 * 60.00055 * 25 23 21 27 27 H 1.48497 * 109.47082 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46848 * 299.99877 * 25 23 21 29 29 C 1.46726 * 117.34626 * 57.96662 * 20 19 18 30 30 C 1.50972 * 111.06703 * 307.68528 * 29 20 19 31 31 H 1.08995 * 108.99164 * 167.65997 * 30 29 20 32 32 C 1.47456 * 125.73017 * 4.95451 * 14 12 9 33 33 H 1.09001 * 109.46624 * 270.02032 * 1 2 3 34 34 H 1.08993 * 109.47347 * 30.02027 * 1 2 3 35 35 H 1.09002 * 109.46970 * 150.02541 * 1 2 3 36 36 H 1.09001 * 109.46590 * 270.17497 * 7 6 4 37 37 H 1.09000 * 109.46879 * 30.17695 * 7 6 4 38 38 H 1.09000 * 109.46842 * 150.17640 * 7 6 4 39 39 H 1.08997 * 109.47090 * 62.66055 * 11 9 8 40 40 H 1.08999 * 109.46952 * 182.65739 * 11 9 8 41 41 H 1.08999 * 109.46660 * 302.66147 * 11 9 8 42 42 H 1.09005 * 110.43725 * 36.30972 * 15 14 12 43 43 H 1.08998 * 110.55382 * 273.83216 * 15 14 12 44 44 H 1.09007 * 109.21033 * 43.06456 * 18 16 15 45 45 H 1.09006 * 109.21103 * 283.75714 * 18 16 15 46 46 H 1.09000 * 109.79808 * 182.69062 * 19 18 16 47 47 H 1.09003 * 109.83676 * 61.87280 * 19 18 16 48 48 H 0.97003 * 120.00460 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.15749 * 187.27847 * 29 20 19 50 50 H 1.08997 * 109.15512 * 68.09172 * 29 20 19 51 51 H 1.09005 * 110.06305 * 61.30973 * 32 14 12 52 52 H 1.09003 * 110.06024 * 299.80297 * 32 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 1 4.3908 1.2081 0.0011 6 6 3.6142 -0.7152 0.0064 7 6 4.8351 -1.5988 0.0142 8 6 2.3272 -1.1329 0.0006 9 6 1.8600 -2.5657 0.0013 10 1 2.7244 -3.2297 0.0021 11 6 1.0156 -2.8263 1.2503 12 6 1.0294 -2.8238 -1.2295 13 8 -0.1771 -2.9070 -1.1402 14 7 1.6276 -2.9621 -2.4293 15 6 0.9363 -3.1143 -3.7250 16 6 1.9628 -2.5929 -4.7763 17 1 1.7732 -2.9557 -5.7865 18 6 1.9271 -1.0653 -4.6864 19 6 3.1560 -0.4532 -5.3565 20 7 4.3504 -1.0047 -4.6963 21 6 5.2747 -0.1893 -4.0998 22 1 4.9777 0.7779 -3.7220 23 6 6.5936 -0.6056 -3.9810 24 7 7.0292 -1.6231 -4.6932 25 14 7.7501 0.2782 -2.8101 26 1 7.2189 0.1865 -1.4264 27 1 9.0919 -0.3554 -2.8677 28 1 7.8587 1.7055 -3.2052 29 6 4.5113 -2.4632 -4.7029 30 6 3.2711 -3.1483 -4.1816 31 1 3.3351 -4.2137 -4.4023 32 6 3.0824 -2.9871 -2.6684 33 1 -0.3632 0.0004 1.0277 34 1 -0.3634 0.8897 -0.5141 35 1 -0.3633 -0.8902 -0.5134 36 1 5.1346 -1.8136 -1.0116 37 1 5.6486 -1.0898 0.5313 38 1 4.6050 -2.5318 0.5285 39 1 0.1268 -2.1958 1.2259 40 1 0.7170 -3.8743 1.2749 41 1 1.6014 -2.5942 2.1397 42 1 0.0295 -2.5097 -3.7458 43 1 0.6989 -4.1617 -3.9114 44 1 1.9050 -0.7682 -3.6378 45 1 1.0282 -0.6978 -5.1814 46 1 3.1379 0.6306 -5.2414 47 1 3.1671 -0.7116 -6.4154 48 1 7.9507 -1.9143 -4.6099 49 1 5.3598 -2.7323 -4.0740 50 1 4.7026 -2.7972 -5.7226 51 1 3.5332 -3.8295 -2.1437 52 1 3.5326 -2.0528 -2.3329 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088143174.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:12 Heat of formation + Delta-G solvation = 52.786361 kcal Electronic energy + Delta-G solvation = -34176.845149 eV Core-core repulsion = 30178.006019 eV Total energy + Delta-G solvation = -3998.839130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.36704 -39.98641 -38.24511 -35.23608 -34.07999 -33.19538 -32.53318 -30.82775 -30.49839 -30.05348 -27.79554 -27.45203 -26.62232 -25.64255 -24.49817 -22.95822 -21.64327 -21.23242 -20.02906 -19.74590 -18.64323 -18.31615 -17.35091 -16.83823 -16.19504 -15.73526 -15.19599 -14.97354 -14.79375 -14.38856 -13.98979 -13.63258 -13.56658 -13.53649 -13.29742 -13.01584 -12.97217 -12.67937 -12.57397 -12.31746 -12.22658 -12.14180 -12.05864 -11.89723 -11.75550 -11.69090 -11.42154 -11.15597 -11.14451 -11.05300 -10.79936 -10.59266 -10.50836 -10.32611 -10.17481 -9.97376 -9.59681 -9.47831 -9.45867 -8.97648 -8.58821 -8.21881 -8.12604 -6.75837 -5.88500 -3.29280 2.09677 2.77893 2.97917 3.15772 3.20001 3.29484 3.32213 3.37652 4.36544 4.72926 4.81573 4.84437 5.06772 5.10351 5.17741 5.23679 5.24006 5.29967 5.37087 5.44940 5.50513 5.60091 5.66587 5.71455 5.79762 5.80818 5.87656 5.91109 5.93801 5.98210 6.05915 6.10117 6.14737 6.19555 6.21761 6.32127 6.34177 6.39663 6.45424 6.50302 6.58604 6.71062 6.72272 6.83792 6.88273 7.00695 7.22794 7.51833 7.54712 7.68168 7.89456 7.94215 8.33842 8.48381 9.11799 9.74428 10.34950 11.19996 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.005975 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.562154 B = 4685.448798 C = 6086.381843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.094 3.906 3 N -0.298 5.298 4 N -0.468 5.468 5 H 0.438 0.562 6 C 0.121 3.879 7 C -0.105 4.105 8 C -0.237 4.237 9 C -0.022 4.022 10 H 0.091 0.909 11 C -0.129 4.129 12 C 0.539 3.461 13 O -0.553 6.553 14 N -0.607 5.607 15 C 0.108 3.892 16 C -0.087 4.087 17 H 0.089 0.911 18 C -0.125 4.125 19 C 0.143 3.857 20 N -0.586 5.586 21 C -0.238 4.238 22 H 0.061 0.939 23 C 0.002 3.998 24 N -0.903 5.903 25 Si 0.894 3.106 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.177 3.823 30 C -0.113 4.113 31 H 0.061 0.939 32 C 0.109 3.891 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.051 0.949 47 H 0.020 0.980 48 H 0.254 0.746 49 H 0.094 0.906 50 H 0.022 0.978 51 H 0.055 0.945 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.486 -3.808 8.009 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 N -0.121 5.121 4 N -0.175 5.175 5 H 0.282 0.718 6 C -0.009 4.009 7 C -0.163 4.163 8 C -0.249 4.249 9 C -0.045 4.045 10 H 0.109 0.891 11 C -0.187 4.187 12 C 0.329 3.671 13 O -0.432 6.432 14 N -0.339 5.339 15 C -0.014 4.014 16 C -0.107 4.107 17 H 0.107 0.893 18 C -0.165 4.165 19 C 0.017 3.983 20 N -0.309 5.309 21 C -0.368 4.368 22 H 0.079 0.921 23 C -0.196 4.196 24 N -0.548 5.548 25 Si 0.724 3.276 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.051 3.949 30 C -0.134 4.134 31 H 0.080 0.920 32 C -0.013 4.013 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.038 0.962 48 H 0.065 0.935 49 H 0.112 0.888 50 H 0.040 0.960 51 H 0.074 0.926 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.932 -2.616 8.133 11.658 hybrid contribution 1.336 -0.083 0.417 1.402 sum -6.596 -2.699 8.550 11.131 Atomic orbital electron populations 1.20443 0.87026 1.04319 1.02751 1.22091 0.96717 0.90016 0.98422 1.77264 0.86430 1.22246 1.26166 1.46088 1.07254 1.04846 1.59292 0.71784 1.20786 0.96449 0.85088 0.98608 1.20670 0.92829 0.97835 1.04996 1.18993 0.91266 0.94212 1.20381 1.19444 0.98539 0.93209 0.93294 0.89061 1.21655 1.00006 1.01886 0.95154 1.20205 0.87944 0.75449 0.83550 1.90603 1.14613 1.52118 1.85868 1.48606 1.08321 1.71027 1.05987 1.22521 0.96038 0.99963 0.82911 1.22295 0.94352 0.96666 0.97344 0.89260 1.21950 0.98725 0.94053 1.01729 1.20878 0.86934 0.96491 0.93992 1.43949 1.22210 1.01250 1.63449 1.19046 0.87726 0.99998 1.30041 0.92081 1.24952 0.96302 0.98865 0.99455 1.69973 1.15624 1.28970 1.40264 0.86509 0.80517 0.79452 0.81101 1.21138 1.21565 1.21055 1.20163 0.92968 0.82976 0.98839 1.22109 0.98125 0.99859 0.93292 0.92013 1.22126 0.79726 1.02149 0.97310 0.90908 0.91490 0.88691 0.88332 0.91101 0.89917 0.91260 0.92501 0.92305 0.91080 0.92333 0.92010 0.93515 0.93013 0.96180 0.93546 0.88814 0.95966 0.92644 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 8.84 36.01 0.32 -0.92 16 2 C 0.09 1.53 7.04 -82.40 -0.58 0.95 16 3 N -0.30 -5.11 12.70 33.67 0.43 -4.68 16 4 N -0.47 -7.33 7.36 33.48 0.25 -7.08 16 5 H 0.44 6.03 8.96 -182.61 -1.64 4.40 16 6 C 0.12 1.81 6.51 -82.26 -0.54 1.28 16 7 C -0.11 -1.37 9.78 36.01 0.35 -1.01 16 8 C -0.24 -3.60 4.32 -105.05 -0.45 -4.06 16 9 C -0.02 -0.31 2.29 -92.92 -0.21 -0.52 16 10 H 0.09 1.15 6.38 -51.93 -0.33 0.82 16 11 C -0.13 -1.59 8.49 37.16 0.32 -1.27 16 12 C 0.54 8.71 6.16 -10.98 -0.07 8.64 16 13 O -0.55 -9.94 14.28 5.56 0.08 -9.86 16 14 N -0.61 -9.68 2.85 -169.96 -0.48 -10.16 16 15 C 0.11 1.64 6.16 -1.86 -0.01 1.63 16 16 C -0.09 -1.37 3.72 -88.47 -0.33 -1.70 16 17 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 18 C -0.13 -2.18 4.97 -26.81 -0.13 -2.31 16 19 C 0.14 2.89 6.52 -3.77 -0.02 2.86 16 20 N -0.59 -13.31 2.89 -173.84 -0.50 -13.81 16 21 C -0.24 -5.95 9.68 -15.06 -0.15 -6.10 16 22 H 0.06 1.56 7.88 -52.49 -0.41 1.15 16 23 C 0.00 0.06 4.99 -17.43 -0.09 -0.03 16 24 N -0.90 -23.93 11.04 55.49 0.61 -23.31 16 25 Si 0.89 19.67 29.58 -169.99 -5.03 14.64 16 26 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 C 0.18 3.74 4.66 -4.94 -0.02 3.72 16 30 C -0.11 -1.92 2.70 -90.91 -0.25 -2.16 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 C 0.11 1.77 5.22 -3.35 -0.02 1.75 16 33 H 0.07 0.89 7.96 -51.93 -0.41 0.48 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.47 4.78 -51.93 -0.25 1.23 16 36 H 0.10 1.50 7.14 -51.93 -0.37 1.13 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.87 7.14 -51.93 -0.37 0.50 16 39 H 0.07 0.90 5.94 -51.93 -0.31 0.59 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.11 7.92 -51.93 -0.41 0.70 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.22 7.13 -51.93 -0.37 0.85 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.05 1.07 7.96 -51.93 -0.41 0.65 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 49 H 0.09 2.20 5.94 -51.93 -0.31 1.89 16 50 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 52 H 0.09 1.64 5.41 -51.93 -0.28 1.36 16 LS Contribution 392.44 15.07 5.91 5.91 Total: -1.00 -28.97 392.44 -10.28 -39.24 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -9.66 Total: 8.38 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.88 Total: 0.74 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.30 Total: -59.05 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.97 -10.28 -39.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088143174.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.031 kcal (2) G-P(sol) polarization free energy of solvation -28.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds