Wall clock time and date at job start Wed Apr 1 2020 03:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30843 * 125.89496 * 2 1 4 4 N 1.40087 * 108.20043 * 179.97438 * 3 2 1 5 5 H 0.97001 * 126.03262 * 180.02562 * 4 3 2 6 6 C 1.34941 * 107.92813 * 359.75890 * 4 3 2 7 7 C 1.50707 * 126.12720 * 180.24284 * 6 4 3 8 8 C 1.35316 * 107.74616 * 0.38797 * 6 4 3 9 9 C 1.50703 * 126.04068 * 179.87373 * 8 6 4 10 10 H 1.09000 * 109.46722 * 359.71815 * 9 8 6 11 11 C 1.53001 * 109.47170 * 119.71704 * 9 8 6 12 12 C 1.50701 * 109.47123 * 239.71699 * 9 8 6 13 13 O 1.21273 * 120.00060 * 255.31191 * 12 9 8 14 14 N 1.34783 * 119.99922 * 75.30798 * 12 9 8 15 15 C 1.47640 * 125.73160 * 184.94355 * 14 12 9 16 16 C 1.55914 * 104.41922 * 155.04083 * 15 14 12 17 17 H 1.08994 * 113.52653 * 159.12144 * 16 15 14 18 18 C 1.53066 * 106.18512 * 283.23351 * 16 15 14 19 19 C 1.52776 * 110.81573 * 163.41134 * 18 16 15 20 20 N 1.47200 * 107.80488 * 302.27119 * 19 18 16 21 21 C 1.36936 * 121.32752 * 237.95229 * 20 19 18 22 22 H 1.08001 * 119.99905 * 26.54116 * 21 20 19 23 23 C 1.38806 * 119.99979 * 206.54865 * 21 20 19 24 24 N 1.31614 * 120.00243 * 15.51413 * 23 21 20 25 25 Si 1.86807 * 119.99979 * 195.51757 * 23 21 20 26 26 H 1.48502 * 109.47153 * 60.00055 * 25 23 21 27 27 H 1.48497 * 109.47082 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46848 * 299.99877 * 25 23 21 29 29 C 1.46726 * 117.34626 * 57.96662 * 20 19 18 30 30 C 1.50972 * 111.06703 * 307.68528 * 29 20 19 31 31 H 1.08995 * 108.99164 * 167.65997 * 30 29 20 32 32 C 1.47456 * 125.73017 * 4.95451 * 14 12 9 33 33 H 1.09001 * 109.46624 * 270.02032 * 1 2 3 34 34 H 1.08993 * 109.47347 * 30.02027 * 1 2 3 35 35 H 1.09002 * 109.46970 * 150.02541 * 1 2 3 36 36 H 1.09001 * 109.46590 * 270.17497 * 7 6 4 37 37 H 1.09000 * 109.46879 * 30.17695 * 7 6 4 38 38 H 1.09000 * 109.46842 * 150.17640 * 7 6 4 39 39 H 1.08997 * 109.47090 * 62.66055 * 11 9 8 40 40 H 1.08999 * 109.46952 * 182.65739 * 11 9 8 41 41 H 1.08999 * 109.46660 * 302.66147 * 11 9 8 42 42 H 1.09005 * 110.43725 * 36.30972 * 15 14 12 43 43 H 1.08998 * 110.55382 * 273.83216 * 15 14 12 44 44 H 1.09007 * 109.21033 * 43.06456 * 18 16 15 45 45 H 1.09006 * 109.21103 * 283.75714 * 18 16 15 46 46 H 1.09000 * 109.79808 * 182.69062 * 19 18 16 47 47 H 1.09003 * 109.83676 * 61.87280 * 19 18 16 48 48 H 0.97003 * 120.00460 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.15749 * 187.27847 * 29 20 19 50 50 H 1.08997 * 109.15512 * 68.09172 * 29 20 19 51 51 H 1.09005 * 110.06305 * 61.30973 * 32 14 12 52 52 H 1.09003 * 110.06024 * 299.80297 * 32 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 1 4.3908 1.2081 0.0011 6 6 3.6142 -0.7152 0.0064 7 6 4.8351 -1.5988 0.0142 8 6 2.3272 -1.1329 0.0006 9 6 1.8600 -2.5657 0.0013 10 1 2.7244 -3.2297 0.0021 11 6 1.0156 -2.8263 1.2503 12 6 1.0294 -2.8238 -1.2295 13 8 -0.1771 -2.9070 -1.1402 14 7 1.6276 -2.9621 -2.4293 15 6 0.9363 -3.1143 -3.7250 16 6 1.9628 -2.5929 -4.7763 17 1 1.7732 -2.9557 -5.7865 18 6 1.9271 -1.0653 -4.6864 19 6 3.1560 -0.4532 -5.3565 20 7 4.3504 -1.0047 -4.6963 21 6 5.2747 -0.1893 -4.0998 22 1 4.9777 0.7779 -3.7220 23 6 6.5936 -0.6056 -3.9810 24 7 7.0292 -1.6231 -4.6932 25 14 7.7501 0.2782 -2.8101 26 1 7.2189 0.1865 -1.4264 27 1 9.0919 -0.3554 -2.8677 28 1 7.8587 1.7055 -3.2052 29 6 4.5113 -2.4632 -4.7029 30 6 3.2711 -3.1483 -4.1816 31 1 3.3351 -4.2137 -4.4023 32 6 3.0824 -2.9871 -2.6684 33 1 -0.3632 0.0004 1.0277 34 1 -0.3634 0.8897 -0.5141 35 1 -0.3633 -0.8902 -0.5134 36 1 5.1346 -1.8136 -1.0116 37 1 5.6486 -1.0898 0.5313 38 1 4.6050 -2.5318 0.5285 39 1 0.1268 -2.1958 1.2259 40 1 0.7170 -3.8743 1.2749 41 1 1.6014 -2.5942 2.1397 42 1 0.0295 -2.5097 -3.7458 43 1 0.6989 -4.1617 -3.9114 44 1 1.9050 -0.7682 -3.6378 45 1 1.0282 -0.6978 -5.1814 46 1 3.1379 0.6306 -5.2414 47 1 3.1671 -0.7116 -6.4154 48 1 7.9507 -1.9143 -4.6099 49 1 5.3598 -2.7323 -4.0740 50 1 4.7026 -2.7972 -5.7226 51 1 3.5332 -3.8295 -2.1437 52 1 3.5326 -2.0528 -2.3329 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088143174.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:11 Heat of formation + Delta-G solvation = 37.053920 kcal Electronic energy + Delta-G solvation = -34177.527359 eV Core-core repulsion = 30178.006019 eV Total energy + Delta-G solvation = -3999.521339 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.55522 -41.29655 -39.60526 -36.83176 -35.23892 -34.44159 -34.09845 -32.30189 -32.10559 -31.16852 -29.02013 -28.85389 -27.75704 -27.20476 -25.91035 -24.33524 -23.15508 -22.67985 -21.20525 -20.96306 -20.10480 -19.60961 -18.71653 -18.35986 -17.47406 -17.14053 -16.58896 -16.45959 -16.06750 -15.73355 -15.51427 -15.23473 -14.93846 -14.75256 -14.58068 -14.35176 -14.18970 -13.85598 -13.80953 -13.76353 -13.42403 -13.41101 -13.23264 -13.20595 -13.01335 -12.87825 -12.82061 -12.67089 -12.50158 -12.42427 -12.28001 -12.19739 -12.04698 -11.95766 -11.64072 -11.35493 -11.03164 -10.99034 -10.83762 -10.47182 -10.19105 -9.48813 -9.30673 -8.61250 -7.81159 -5.24225 0.90833 1.44112 1.49361 1.54837 1.55932 1.79307 1.99771 2.16528 2.53287 3.31635 3.50791 3.68331 3.70845 3.72270 3.76942 3.89280 3.95811 4.11916 4.18806 4.27943 4.32843 4.43038 4.49492 4.52987 4.55977 4.66789 4.68755 4.73143 4.73802 4.77199 4.82577 4.90344 4.96044 4.97599 5.03947 5.08851 5.10541 5.12750 5.17708 5.21779 5.24218 5.25226 5.38636 5.40203 5.51313 5.60174 5.66644 5.72614 5.83037 6.38894 6.43492 6.64116 6.73792 7.21149 7.24589 7.90555 8.46398 9.24686 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.005975 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.562154 B = 4685.448798 C = 6086.381843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.082 3.918 3 N -0.327 5.327 4 N -0.473 5.473 5 H 0.443 0.557 6 C 0.118 3.882 7 C -0.102 4.102 8 C -0.241 4.241 9 C -0.019 4.019 10 H 0.108 0.892 11 C -0.125 4.125 12 C 0.536 3.464 13 O -0.572 6.572 14 N -0.609 5.609 15 C 0.112 3.888 16 C -0.081 4.081 17 H 0.110 0.890 18 C -0.111 4.111 19 C 0.141 3.859 20 N -0.599 5.599 21 C -0.243 4.243 22 H 0.048 0.952 23 C -0.036 4.036 24 N -0.929 5.929 25 Si 0.944 3.056 26 H -0.257 1.257 27 H -0.297 1.297 28 H -0.293 1.293 29 C 0.190 3.810 30 C -0.110 4.110 31 H 0.084 0.916 32 C 0.118 3.882 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.037 0.963 45 H 0.066 0.934 46 H 0.038 0.962 47 H 0.022 0.978 48 H 0.250 0.750 49 H 0.069 0.931 50 H -0.001 1.001 51 H 0.075 0.925 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.170 -5.067 9.172 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 N -0.151 5.151 4 N -0.180 5.180 5 H 0.288 0.712 6 C -0.012 4.012 7 C -0.160 4.160 8 C -0.253 4.253 9 C -0.041 4.041 10 H 0.126 0.874 11 C -0.183 4.183 12 C 0.326 3.674 13 O -0.453 6.453 14 N -0.341 5.341 15 C -0.010 4.010 16 C -0.100 4.100 17 H 0.128 0.872 18 C -0.150 4.150 19 C 0.015 3.985 20 N -0.322 5.322 21 C -0.373 4.373 22 H 0.066 0.934 23 C -0.231 4.231 24 N -0.576 5.576 25 Si 0.773 3.227 26 H -0.182 1.182 27 H -0.223 1.223 28 H -0.220 1.220 29 C 0.064 3.936 30 C -0.131 4.131 31 H 0.102 0.898 32 C -0.004 4.004 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.056 0.944 45 H 0.085 0.915 46 H 0.057 0.943 47 H 0.040 0.960 48 H 0.059 0.941 49 H 0.087 0.913 50 H 0.017 0.983 51 H 0.093 0.907 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.643 -3.873 9.304 13.276 hybrid contribution 1.542 0.377 -0.027 1.588 sum -7.100 -3.497 9.277 12.195 Atomic orbital electron populations 1.20424 0.86079 1.03647 1.03819 1.22453 0.97529 0.90295 0.98104 1.77207 0.87227 1.23180 1.27449 1.46159 1.07093 1.05391 1.59392 0.71218 1.21152 0.97214 0.84972 0.97848 1.20717 0.92384 0.98858 1.04043 1.19150 0.91180 0.94649 1.20277 1.19507 0.99041 0.92630 0.92955 0.87445 1.21639 0.99565 1.02187 0.94889 1.20590 0.87888 0.74864 0.84049 1.90594 1.15527 1.53000 1.86186 1.48660 1.08137 1.70908 1.06385 1.22529 0.95355 1.00999 0.82159 1.22306 0.93850 0.95120 0.98731 0.87194 1.21761 0.97934 0.95428 0.99875 1.20952 0.87337 0.95961 0.94221 1.44127 1.22492 1.01897 1.63721 1.19101 0.88417 0.99851 1.29922 0.93402 1.25480 0.97332 0.99608 1.00707 1.70118 1.15533 1.30327 1.41590 0.85709 0.78429 0.77606 0.80952 1.18211 1.22295 1.21977 1.19929 0.94275 0.82328 0.97101 1.21936 0.96637 1.00529 0.93968 0.89818 1.21958 0.79927 1.01794 0.96747 0.88985 0.91553 0.89778 0.90548 0.89882 0.87198 0.92232 0.91701 0.90754 0.91526 0.90327 0.94436 0.91533 0.94340 0.95959 0.94088 0.91267 0.98339 0.90660 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.26 8.84 71.24 0.63 -1.63 16 2 C 0.08 2.62 7.04 43.10 0.30 2.92 16 3 N -0.33 -11.15 12.70 -47.38 -0.60 -11.75 16 4 N -0.47 -14.55 7.36 -48.00 -0.35 -14.91 16 5 H 0.44 12.01 8.96 -213.33 -1.91 10.10 16 6 C 0.12 3.40 6.51 41.41 0.27 3.67 16 7 C -0.10 -2.45 9.78 71.24 0.70 -1.76 16 8 C -0.24 -7.00 4.32 -20.14 -0.09 -7.09 16 9 C -0.02 -0.49 2.29 -12.28 -0.03 -0.52 16 10 H 0.11 2.38 6.38 -2.39 -0.02 2.36 16 11 C -0.13 -2.77 8.49 71.98 0.61 -2.15 16 12 C 0.54 16.27 6.16 87.66 0.54 16.81 16 13 O -0.57 -19.63 14.28 -3.01 -0.04 -19.67 16 14 N -0.61 -18.15 2.85 -810.03 -2.31 -20.46 16 15 C 0.11 3.10 6.16 87.17 0.54 3.63 16 16 C -0.08 -2.37 3.72 -9.40 -0.03 -2.41 16 17 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 18 C -0.11 -3.74 4.97 30.54 0.15 -3.59 16 19 C 0.14 5.69 6.52 86.17 0.56 6.25 16 20 N -0.60 -27.53 2.89 -703.91 -2.03 -29.56 16 21 C -0.24 -12.32 9.68 84.03 0.81 -11.50 16 22 H 0.05 2.52 7.88 -2.91 -0.02 2.49 16 23 C -0.04 -1.80 4.99 84.86 0.42 -1.38 16 24 N -0.93 -50.02 11.04 21.65 0.24 -49.78 16 25 Si 0.94 40.42 29.58 68.60 2.03 42.45 16 26 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 27 H -0.30 -12.99 7.11 99.48 0.71 -12.28 16 28 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 29 C 0.19 8.04 4.66 85.68 0.40 8.43 16 30 C -0.11 -3.55 2.70 -10.98 -0.03 -3.58 16 31 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 32 C 0.12 3.62 5.22 86.31 0.45 4.07 16 33 H 0.09 2.14 7.96 -2.39 -0.02 2.12 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 2.54 4.78 -2.39 -0.01 2.53 16 36 H 0.08 2.25 7.14 -2.39 -0.02 2.23 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.11 1.99 7.14 -2.39 -0.02 1.97 16 39 H 0.06 1.43 5.94 -2.39 -0.01 1.42 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.93 7.92 -2.38 -0.02 1.91 16 43 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.04 1.46 7.13 -2.38 -0.02 1.44 16 45 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 46 H 0.04 1.61 7.96 -2.39 -0.02 1.59 16 47 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 49 H 0.07 3.28 5.94 -2.39 -0.01 3.27 16 50 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 51 H 0.08 2.01 8.09 -2.38 -0.02 1.99 16 52 H 0.06 2.36 5.41 -2.39 -0.01 2.34 16 Total: -1.00 -62.94 392.44 2.16 -60.78 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -0.97 Total: 32.70 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 6.21 Total: 10.20 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -5.06 Total: -126.46 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.04 Total: -19.67 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -62.94 2.16 -60.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088143174.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.837 kcal (2) G-P(sol) polarization free energy of solvation -62.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds