Wall clock time and date at job start Wed Apr 1 2020 03:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30842 * 125.89696 * 2 1 4 4 N 1.40086 * 108.20298 * 180.25739 * 3 2 1 5 5 H 0.97008 * 126.03677 * 179.69842 * 4 3 2 6 6 C 1.34949 * 107.92508 * 359.72546 * 4 3 2 7 7 C 1.50698 * 126.12377 * 180.02562 * 6 4 3 8 8 C 1.35316 * 107.74649 * 359.97438 * 6 4 3 9 9 C 1.50692 * 126.04058 * 179.97438 * 8 6 4 10 10 H 1.09007 * 109.47292 * 4.80471 * 9 8 6 11 11 C 1.52995 * 109.47644 * 244.80558 * 9 8 6 12 12 C 1.50703 * 109.47402 * 124.79896 * 9 8 6 13 13 O 1.21285 * 119.99325 * 0.02562 * 12 9 8 14 14 N 1.34774 * 120.00388 * 180.02562 * 12 9 8 15 15 C 1.47184 * 125.64841 * 180.02562 * 14 12 9 16 16 C 1.55417 * 106.93111 * 178.80325 * 15 14 12 17 17 H 1.08998 * 112.45043 * 145.11330 * 16 15 14 18 18 C 1.53080 * 106.80914 * 268.55073 * 16 15 14 19 19 C 1.51497 * 111.61397 * 163.91162 * 18 16 15 20 20 N 1.47232 * 107.91708 * 302.67509 * 19 18 16 21 21 C 1.36930 * 121.39573 * 237.95410 * 20 19 18 22 22 H 1.08003 * 120.00229 * 150.10528 * 21 20 19 23 23 C 1.38819 * 120.00296 * 330.10301 * 21 20 19 24 24 N 1.31618 * 119.99543 * 341.76806 * 23 21 20 25 25 Si 1.86798 * 120.00538 * 161.76264 * 23 21 20 26 26 H 1.48500 * 109.46713 * 94.98302 * 25 23 21 27 27 H 1.48495 * 109.47278 * 214.98371 * 25 23 21 28 28 H 1.48505 * 109.46714 * 334.98811 * 25 23 21 29 29 C 1.46703 * 117.21209 * 57.97217 * 20 19 18 30 30 C 1.50814 * 111.24626 * 307.85163 * 29 20 19 31 31 H 1.09001 * 109.22593 * 167.57600 * 30 29 20 32 32 C 1.47847 * 125.64853 * 359.97438 * 14 12 9 33 33 H 1.09002 * 109.47060 * 274.18223 * 1 2 3 34 34 H 1.08996 * 109.47149 * 34.18297 * 1 2 3 35 35 H 1.08994 * 109.47068 * 154.18689 * 1 2 3 36 36 H 1.08999 * 109.47650 * 269.97121 * 7 6 4 37 37 H 1.08997 * 109.47344 * 29.97775 * 7 6 4 38 38 H 1.09004 * 109.47099 * 149.97442 * 7 6 4 39 39 H 1.08996 * 109.47339 * 52.56182 * 11 9 8 40 40 H 1.08994 * 109.47729 * 172.56388 * 11 9 8 41 41 H 1.09003 * 109.47094 * 292.56246 * 11 9 8 42 42 H 1.08993 * 109.97282 * 59.43162 * 15 14 12 43 43 H 1.09004 * 109.96665 * 298.16538 * 15 14 12 44 44 H 1.09000 * 109.18262 * 284.34965 * 18 16 15 45 45 H 1.08993 * 109.19068 * 43.60570 * 18 16 15 46 46 H 1.09005 * 110.00947 * 182.88292 * 19 18 16 47 47 H 1.08997 * 109.46446 * 62.15407 * 19 18 16 48 48 H 0.97001 * 120.00112 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.12363 * 187.40185 * 29 20 19 50 50 H 1.08996 * 109.12442 * 68.30804 * 29 20 19 51 51 H 1.09003 * 110.52739 * 38.05643 * 32 14 12 52 52 H 1.09003 * 110.52318 * 275.30746 * 32 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0060 5 1 4.3909 1.2080 -0.0114 6 6 3.6142 -0.7153 -0.0034 7 6 4.8350 -1.5988 -0.0074 8 6 2.3271 -1.1330 0.0045 9 6 1.8599 -2.5656 0.0094 10 1 2.7214 -3.2285 0.0915 11 6 1.1106 -2.8622 -1.2911 12 6 0.9399 -2.7901 1.1817 13 8 0.6881 -1.8764 1.9384 14 7 0.3970 -4.0061 1.3891 15 6 -0.5139 -4.3625 2.4889 16 6 -0.8954 -5.8565 2.2945 17 1 -1.0196 -6.3811 3.2418 18 6 -2.1716 -5.8812 1.4494 19 6 -2.4275 -7.2553 0.8650 20 7 -1.2492 -7.6352 0.0681 21 6 -1.3564 -7.9420 -1.2620 22 1 -0.5291 -7.7496 -1.9290 23 6 -2.5285 -8.5006 -1.7533 24 7 -3.3857 -9.0631 -0.9279 25 14 -2.8892 -8.4539 -3.5855 26 1 -2.4398 -9.7236 -4.2109 27 1 -4.3493 -8.2867 -3.7985 28 1 -2.1650 -7.3142 -4.2036 29 6 0.0445 -7.6716 0.7589 30 6 0.3098 -6.3799 1.4908 31 1 1.1565 -6.5159 2.1637 32 6 0.6170 -5.2027 0.5491 33 1 -0.3633 0.0749 1.0249 34 1 -0.3633 0.8501 -0.5774 35 1 -0.3633 -0.9251 -0.4475 36 1 5.1244 -1.8143 -1.0359 37 1 5.6536 -1.0897 0.5013 38 1 4.6101 -2.5317 0.5097 39 1 1.7298 -2.5749 -2.1409 40 1 0.8881 -3.9277 -1.3475 41 1 0.1799 -2.2951 -1.3116 42 1 -1.4086 -3.7414 2.4474 43 1 -0.0113 -4.2284 3.4468 44 1 -3.0198 -5.5994 2.0734 45 1 -2.0748 -5.1652 0.6333 46 1 -3.3120 -7.2310 0.2284 47 1 -2.5738 -7.9721 1.6730 48 1 -4.2049 -9.4531 -1.2711 49 1 0.8354 -7.8363 0.0273 50 1 0.0443 -8.4939 1.4743 51 1 1.6515 -5.2456 0.2085 52 1 -0.0664 -5.2043 -0.3002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088143175.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:16 Heat of formation + Delta-G solvation = 56.969557 kcal Electronic energy + Delta-G solvation = -32325.237176 eV Core-core repulsion = 28326.579443 eV Total energy + Delta-G solvation = -3998.657733 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.57566 -40.14637 -38.23956 -35.26665 -34.37389 -33.42138 -32.47563 -31.34418 -30.54405 -29.86570 -28.06804 -27.55280 -26.82585 -25.76111 -24.51601 -23.07131 -21.76904 -21.38265 -20.23809 -19.90703 -18.72096 -18.35190 -17.36457 -17.01440 -16.42713 -15.55456 -15.38249 -15.23123 -14.75702 -14.52724 -13.98604 -13.73025 -13.63148 -13.50574 -13.42722 -13.27357 -13.16970 -13.02369 -12.88416 -12.61503 -12.44483 -12.35998 -12.21402 -11.91826 -11.85601 -11.76393 -11.45836 -11.35036 -11.20500 -11.03206 -10.73706 -10.66288 -10.37562 -10.28236 -10.22571 -9.98198 -9.51239 -9.46444 -9.39899 -9.21439 -8.52637 -8.44673 -8.31036 -6.69681 -5.83842 -3.26828 1.78096 2.65816 2.78542 2.88063 3.30790 3.34403 3.42859 3.43949 4.45194 4.47751 4.59095 4.61596 4.82231 4.90800 4.97828 5.05461 5.15261 5.19118 5.25692 5.28926 5.32955 5.37247 5.44340 5.56421 5.61783 5.68192 5.72572 5.80236 5.81441 5.89175 5.94046 5.99743 6.03006 6.05970 6.08735 6.19602 6.23462 6.28810 6.40753 6.52217 6.56687 6.66343 6.69605 6.71931 6.80706 6.84215 7.22000 7.31182 7.60668 7.68465 7.75346 7.79359 8.40679 8.42868 9.15142 9.79071 10.39892 11.24947 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.003058 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.526841 B = 9154.375458 C = 9770.892718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.118 3.882 3 N -0.305 5.305 4 N -0.481 5.481 5 H 0.435 0.565 6 C 0.089 3.911 7 C -0.094 4.094 8 C -0.211 4.211 9 C -0.024 4.024 10 H 0.096 0.904 11 C -0.151 4.151 12 C 0.530 3.470 13 O -0.540 6.540 14 N -0.614 5.614 15 C 0.112 3.888 16 C -0.084 4.084 17 H 0.087 0.913 18 C -0.133 4.133 19 C 0.166 3.834 20 N -0.587 5.587 21 C -0.252 4.252 22 H 0.065 0.935 23 C 0.006 3.994 24 N -0.898 5.898 25 Si 0.898 3.102 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.278 1.278 29 C 0.156 3.844 30 C -0.108 4.108 31 H 0.064 0.936 32 C 0.109 3.891 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.017 0.983 48 H 0.254 0.746 49 H 0.055 0.945 50 H 0.021 0.979 51 H 0.067 0.933 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.274 12.426 2.940 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 N -0.128 5.128 4 N -0.189 5.189 5 H 0.278 0.722 6 C -0.040 4.040 7 C -0.152 4.152 8 C -0.223 4.223 9 C -0.047 4.047 10 H 0.114 0.886 11 C -0.208 4.208 12 C 0.319 3.681 13 O -0.417 6.417 14 N -0.348 5.348 15 C -0.011 4.011 16 C -0.103 4.103 17 H 0.105 0.895 18 C -0.172 4.172 19 C 0.040 3.960 20 N -0.310 5.310 21 C -0.382 4.382 22 H 0.083 0.917 23 C -0.193 4.193 24 N -0.542 5.542 25 Si 0.727 3.273 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.203 1.203 29 C 0.028 3.972 30 C -0.129 4.129 31 H 0.083 0.917 32 C -0.013 4.013 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.106 0.894 47 H 0.035 0.965 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.039 0.961 51 H 0.085 0.915 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.034 14.181 3.268 19.536 hybrid contribution 0.248 -0.630 -0.805 1.051 sum 13.282 13.551 2.464 19.134 Atomic orbital electron populations 1.20312 0.86877 1.02454 1.03574 1.22051 0.96849 0.89700 0.96266 1.77278 0.86283 1.22273 1.26973 1.46041 1.07365 1.04538 1.60922 0.72156 1.20759 0.96595 0.85154 1.01464 1.20480 0.92858 0.98452 1.03442 1.19099 0.91171 0.94756 1.17261 1.19448 0.97981 0.92930 0.94327 0.88585 1.21989 1.00576 1.03124 0.95087 1.20203 0.80865 0.80845 0.86230 1.90664 1.61778 1.41471 1.47761 1.48649 1.47259 1.09847 1.29070 1.22300 0.92970 0.96374 0.89431 1.22137 0.96270 0.92817 0.99038 0.89503 1.21940 0.94811 1.02044 0.98385 1.20518 0.92095 0.89456 0.93881 1.43993 1.01407 1.78584 1.06976 1.19072 1.00898 1.35057 0.83143 0.91729 1.25049 0.99328 0.97460 0.97474 1.70033 1.11873 1.38646 1.33636 0.86362 0.77452 0.77879 0.85568 1.21490 1.21594 1.20325 1.20156 0.90290 0.91827 0.94892 1.21981 0.97180 0.96634 0.97109 0.91735 1.22411 1.00793 0.83206 0.94873 0.89606 0.91638 0.90692 0.89978 0.91087 0.89610 0.91637 0.90652 0.91808 0.91677 0.92514 0.93355 0.92399 0.89422 0.96494 0.93630 0.92647 0.96121 0.91454 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 8.84 36.01 0.32 -0.67 16 2 C 0.12 1.71 6.53 -82.40 -0.54 1.17 16 3 N -0.30 -4.39 12.70 33.67 0.43 -3.97 16 4 N -0.48 -5.32 7.36 33.48 0.25 -5.07 16 5 H 0.44 3.25 8.96 -182.60 -1.64 1.62 16 6 C 0.09 0.96 7.21 -82.26 -0.59 0.37 16 7 C -0.09 -0.64 10.10 36.00 0.36 -0.27 16 8 C -0.21 -2.77 4.43 -105.06 -0.47 -3.23 16 9 C -0.02 -0.30 2.21 -92.93 -0.21 -0.50 16 10 H 0.10 1.00 6.48 -51.93 -0.34 0.66 16 11 C -0.15 -1.74 8.72 37.15 0.32 -1.42 16 12 C 0.53 7.92 6.57 -10.99 -0.07 7.84 16 13 O -0.54 -9.60 13.87 5.55 0.08 -9.53 16 14 N -0.61 -8.89 3.33 -170.01 -0.57 -9.46 16 15 C 0.11 1.63 6.20 -2.39 -0.01 1.62 16 16 C -0.08 -1.26 3.59 -88.76 -0.32 -1.58 16 17 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.13 -2.33 4.74 -27.45 -0.13 -2.46 16 19 C 0.17 3.64 5.42 -4.40 -0.02 3.62 16 20 N -0.59 -13.26 2.89 -174.69 -0.50 -13.76 16 21 C -0.25 -6.37 9.62 -15.06 -0.14 -6.51 16 22 H 0.07 1.59 7.89 -52.48 -0.41 1.17 16 23 C 0.01 0.16 4.92 -17.43 -0.09 0.08 16 24 N -0.90 -24.94 11.37 55.49 0.63 -24.31 16 25 Si 0.90 20.66 29.59 -169.99 -5.03 15.63 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 C 0.16 2.87 5.92 -5.03 -0.03 2.84 16 30 C -0.11 -1.62 2.81 -90.74 -0.26 -1.88 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 C 0.11 1.54 4.11 -2.86 -0.01 1.53 16 33 H 0.09 1.25 7.37 -51.93 -0.38 0.87 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.98 5.10 -51.93 -0.26 0.71 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.57 7.08 -51.93 -0.37 0.20 16 39 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 40 H 0.07 0.89 5.27 -51.93 -0.27 0.62 16 41 H 0.06 0.79 5.65 -51.93 -0.29 0.49 16 42 H 0.06 0.99 7.76 -51.93 -0.40 0.59 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.08 7.14 -51.93 -0.37 0.71 16 46 H 0.09 2.20 6.10 -51.93 -0.32 1.88 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 49 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 50 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.07 0.81 7.39 -51.93 -0.38 0.43 16 52 H 0.09 1.44 6.61 -51.93 -0.34 1.09 16 LS Contribution 390.83 15.07 5.89 5.89 Total: -1.00 -31.64 390.83 -10.27 -41.91 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -9.56 Total: 2.14 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.88 Total: 0.54 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.23 Total: -56.58 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.64 -10.27 -41.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088143175.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.880 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds