Wall clock time and date at job start Wed Apr 1 2020 04:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32136 * 119.90328 * 2 1 4 4 C 1.32082 * 120.07421 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.06425 * 180.02562 * 4 3 2 6 6 C 1.39440 * 119.87022 * 0.02562 * 4 3 2 7 7 C 1.48149 * 120.09247 * 179.97438 * 6 4 3 8 8 O 1.21516 * 120.00351 * 6.33957 * 7 6 4 9 9 N 1.34778 * 120.00023 * 186.34098 * 7 6 4 10 10 C 1.46957 * 120.35117 * 359.97438 * 9 7 6 11 11 C 1.52346 * 109.08469 * 68.38325 * 10 9 7 12 12 C 1.53797 * 109.16481 * 72.70333 * 11 10 9 13 13 C 1.52453 * 109.41793 * 282.13003 * 12 11 10 14 14 C 1.53960 * 110.73364 * 113.72790 * 13 12 11 15 15 C 1.52871 * 109.71826 * 315.64825 * 14 13 12 16 16 H 1.09001 * 109.48518 * 47.10158 * 15 14 13 17 17 N 1.46506 * 109.48292 * 167.12681 * 15 14 13 18 18 C 1.36937 * 119.99839 * 205.00082 * 17 15 14 19 19 H 1.07997 * 120.00352 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99827 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00153 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00103 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47045 * 89.99992 * 22 20 18 24 24 H 1.48494 * 109.47176 * 210.00096 * 22 20 18 25 25 H 1.48500 * 109.47157 * 329.99932 * 22 20 18 26 26 C 1.45336 * 120.35514 * 179.72611 * 9 7 6 27 27 N 1.33002 * 119.80875 * 359.97438 * 6 4 3 28 28 C 1.31804 * 119.92319 * 359.72020 * 27 6 4 29 29 C 1.50703 * 119.93237 * 180.29399 * 28 27 6 30 30 H 1.09000 * 109.47173 * 90.00283 * 1 2 3 31 31 H 1.08991 * 109.47238 * 330.00408 * 1 2 3 32 32 H 1.09000 * 109.47287 * 209.99570 * 1 2 3 33 33 H 1.08996 * 109.47101 * 96.85556 * 5 4 3 34 34 H 1.09000 * 109.47256 * 216.85757 * 5 4 3 35 35 H 1.09003 * 109.47100 * 336.85239 * 5 4 3 36 36 H 1.09001 * 109.53562 * 188.26337 * 10 9 7 37 37 H 1.08999 * 109.54220 * 308.41873 * 10 9 7 38 38 H 1.09006 * 109.51632 * 192.60615 * 11 10 9 39 39 H 1.08996 * 109.52003 * 312.73161 * 11 10 9 40 40 H 1.08996 * 109.47820 * 42.11199 * 12 11 10 41 41 H 1.09001 * 109.47902 * 162.14486 * 12 11 10 42 42 H 1.08997 * 109.21928 * 234.05482 * 13 12 11 43 43 H 1.09003 * 109.22434 * 353.44504 * 13 12 11 44 44 H 1.09012 * 109.42753 * 75.72449 * 14 13 12 45 45 H 1.08996 * 109.43132 * 195.56543 * 14 13 12 46 46 H 0.97001 * 119.99937 * 24.98945 * 17 15 14 47 47 H 0.96999 * 120.00514 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.67794 * 343.07473 * 26 9 7 49 49 H 1.08998 * 109.67748 * 103.61841 * 26 9 7 50 50 H 1.09000 * 109.46747 * 270.26504 * 29 28 27 51 51 H 1.08995 * 109.47441 * 30.25919 * 29 28 27 52 52 H 1.09002 * 109.46789 * 150.26919 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4865 1.1494 0.0005 5 6 4.2376 2.4559 0.0011 6 6 4.1846 -0.0577 0.0005 7 6 5.6661 -0.0590 0.0005 8 8 6.2747 0.9863 0.1167 9 7 6.3389 -1.2197 -0.1284 10 6 5.6108 -2.4885 -0.2689 11 6 4.9029 -2.5098 -1.6177 12 6 5.9453 -2.7030 -2.7320 13 6 6.6590 -1.3814 -2.9931 14 6 8.1428 -1.4750 -2.5932 15 6 8.2692 -2.1755 -1.2403 16 1 7.6560 -3.0767 -1.2388 17 7 9.6695 -2.5369 -1.0061 18 6 9.9776 -3.5771 -0.1705 19 1 9.1883 -4.1308 0.3162 20 6 11.3043 -3.9200 0.0510 21 7 12.2662 -3.2456 -0.5426 22 14 11.7247 -5.3385 1.1914 23 1 11.7882 -6.5996 0.4100 24 1 13.0406 -5.0859 1.8313 25 1 10.6793 -5.4575 2.2394 26 6 7.7923 -1.2293 -0.1354 27 7 3.5166 -1.2078 0.0005 28 6 2.1986 -1.2026 0.0061 29 6 1.4414 -2.5056 0.0128 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 0.8899 0.5137 32 1 -0.3634 -0.8900 0.5138 33 1 4.5246 2.7095 1.0215 34 1 5.1318 2.3613 -0.6150 35 1 3.5996 3.2419 -0.4030 36 1 6.3133 -3.3200 -0.2128 37 1 4.8760 -2.5777 0.5312 38 1 4.1882 -3.3325 -1.6409 39 1 4.3778 -1.5667 -1.7684 40 1 6.6724 -3.4540 -2.4232 41 1 5.4464 -3.0330 -3.6432 42 1 6.5875 -1.1384 -4.0532 43 1 6.1800 -0.5938 -2.4113 44 1 8.6866 -2.0432 -3.3480 45 1 8.5633 -0.4719 -2.5229 46 1 10.3784 -2.0395 -1.4431 47 1 13.1934 -3.4848 -0.3876 48 1 8.1650 -0.2233 -0.3281 49 1 8.1616 -1.5798 0.8284 50 1 1.2587 -2.8248 -1.0133 51 1 2.0285 -3.2643 0.5302 52 1 0.4895 -2.3700 0.5261 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088344356.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:26 Heat of formation + Delta-G solvation = 49.834696 kcal Electronic energy + Delta-G solvation = -32696.830927 eV Core-core repulsion = 28697.863804 eV Total energy + Delta-G solvation = -3998.967123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.85120 -39.92958 -37.75750 -35.57855 -34.75593 -34.27536 -33.78483 -32.15846 -30.39278 -29.88274 -29.30376 -27.44960 -26.34702 -25.81305 -24.08776 -23.56089 -22.66243 -21.92826 -21.41679 -19.86967 -18.83110 -18.27601 -17.23340 -16.80518 -16.18910 -15.95677 -15.54602 -15.40609 -14.76720 -14.43517 -14.24712 -14.02559 -13.84044 -13.68270 -13.57861 -13.36433 -13.30124 -13.17736 -12.91131 -12.85383 -12.60080 -12.44517 -12.33574 -12.18595 -12.02664 -11.74051 -11.46825 -11.37326 -11.16773 -10.96481 -10.84983 -10.68110 -10.49836 -10.38362 -10.23414 -10.15654 -9.87591 -9.73159 -9.60778 -9.12420 -9.07806 -8.93679 -8.14909 -6.99804 -5.79807 -3.09410 0.24142 0.83577 2.72122 3.10046 3.41592 3.46795 3.48548 3.54386 3.71105 3.76967 4.12998 4.34939 4.56463 4.68475 4.70543 4.94743 4.98786 5.05043 5.13413 5.16283 5.20219 5.26078 5.38584 5.45356 5.49020 5.50282 5.57572 5.61030 5.65153 5.68694 5.76102 5.79368 5.89771 5.93782 5.99771 6.01234 6.14136 6.18667 6.22539 6.33455 6.35544 6.39010 6.50546 6.60298 6.67691 6.81868 6.82434 6.98141 7.10466 7.48062 7.65765 7.66819 8.29423 8.38433 9.49560 10.06077 10.40900 11.42435 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.003083 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.789599 B = 9078.663934 C = 9447.460768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.104 3.896 3 N -0.447 5.447 4 C 0.137 3.863 5 C -0.104 4.104 6 C 0.026 3.974 7 C 0.565 3.435 8 O -0.532 6.532 9 N -0.572 5.572 10 C 0.112 3.888 11 C -0.116 4.116 12 C -0.132 4.132 13 C -0.112 4.112 14 C -0.123 4.123 15 C 0.158 3.842 16 H 0.067 0.933 17 N -0.719 5.719 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.086 3.914 27 N -0.386 5.386 28 C 0.057 3.943 29 C -0.101 4.101 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.081 0.919 49 H 0.071 0.929 50 H 0.082 0.918 51 H 0.082 0.918 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.503 4.350 -1.628 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.039 4.039 3 N -0.162 5.162 4 C -0.003 4.003 5 C -0.162 4.162 6 C -0.115 4.115 7 C 0.351 3.649 8 O -0.410 6.410 9 N -0.302 5.302 10 C -0.011 4.011 11 C -0.154 4.154 12 C -0.169 4.169 13 C -0.150 4.150 14 C -0.161 4.161 15 C 0.048 3.952 16 H 0.085 0.915 17 N -0.359 5.359 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.577 5.577 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.038 4.038 27 N -0.104 5.104 28 C -0.086 4.086 29 C -0.158 4.158 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.100 0.900 49 H 0.089 0.911 50 H 0.101 0.899 51 H 0.101 0.899 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.048 4.747 -1.447 25.535 hybrid contribution 0.531 -0.626 0.513 0.968 sum -24.517 4.121 -0.933 24.878 Atomic orbital electron populations 1.20823 0.87692 1.04143 1.03681 1.22371 0.98404 0.89059 0.94034 1.68295 1.07894 1.28845 1.11186 1.22323 0.89659 0.96718 0.91567 1.21033 0.99978 0.90539 1.04625 1.22043 0.96136 0.90011 1.03277 1.17569 0.84794 0.84297 0.78227 1.90728 1.68367 1.30726 1.51222 1.47802 1.07787 1.06289 1.68331 1.21867 0.95569 0.85499 0.98122 1.22042 0.97233 1.01631 0.94525 1.21936 0.98354 0.98550 0.98100 1.21629 0.96118 0.97407 0.99869 1.22020 0.95246 1.00694 0.98169 1.20839 0.88190 0.95335 0.90850 0.91524 1.42416 1.00432 1.37817 1.55254 1.19202 0.91509 1.07018 1.19612 0.91184 1.24750 0.95715 0.99617 1.00595 1.69660 0.99052 1.42275 1.46755 0.86215 0.77570 0.82140 0.80405 1.21698 1.21776 1.20729 1.22655 0.76408 1.02791 1.01982 1.68933 1.07667 1.27706 1.06120 1.22222 0.90606 0.96787 0.99026 1.20753 0.99216 0.92278 1.03591 0.89661 0.90070 0.89681 0.89590 0.87418 0.91233 0.89723 0.89392 0.91517 0.92104 0.90272 0.92852 0.93171 0.92707 0.91703 0.92425 0.78098 0.93430 0.90014 0.91108 0.89899 0.89947 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 9.79 36.00 0.35 -0.26 16 2 C 0.10 1.03 6.79 -82.28 -0.56 0.47 16 3 N -0.45 -5.50 10.34 -5.24 -0.05 -5.56 16 4 C 0.14 1.84 6.82 -82.04 -0.56 1.28 16 5 C -0.10 -1.29 8.86 36.01 0.32 -0.97 16 6 C 0.03 0.37 5.73 -82.84 -0.48 -0.11 16 7 C 0.57 9.21 6.17 -12.19 -0.08 9.13 16 8 O -0.53 -9.67 12.79 5.35 0.07 -9.60 16 9 N -0.57 -9.17 1.69 -175.58 -0.30 -9.47 16 10 C 0.11 1.54 4.88 -4.13 -0.02 1.52 16 11 C -0.12 -1.42 4.41 -26.65 -0.12 -1.54 16 12 C -0.13 -1.76 5.49 -26.60 -0.15 -1.90 16 13 C -0.11 -1.65 5.40 -26.51 -0.14 -1.79 16 14 C -0.12 -2.12 5.21 -26.30 -0.14 -2.25 16 15 C 0.16 3.05 2.29 -67.95 -0.16 2.90 16 16 H 0.07 1.27 3.29 -51.93 -0.17 1.10 16 17 N -0.72 -17.50 5.12 -53.44 -0.27 -17.77 16 18 C -0.24 -6.49 9.88 -15.06 -0.15 -6.64 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 22 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.09 1.62 5.58 -4.62 -0.03 1.60 16 27 N -0.39 -4.71 4.22 -5.88 -0.02 -4.73 16 28 C 0.06 0.56 6.79 -82.42 -0.56 0.00 16 29 C -0.10 -0.60 9.78 36.01 0.35 -0.25 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.30 5.93 -51.93 -0.31 -0.01 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.11 1.48 5.87 -51.93 -0.30 1.18 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.24 6.07 -51.93 -0.32 0.92 16 37 H 0.09 1.15 6.27 -51.93 -0.33 0.83 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.81 4.89 -51.93 -0.25 0.55 16 40 H 0.08 1.17 5.47 -51.93 -0.28 0.88 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.86 5.38 -51.93 -0.28 0.58 16 44 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 45 H 0.06 1.02 7.85 -51.93 -0.41 0.61 16 46 H 0.39 10.12 7.80 -40.82 -0.32 9.80 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.08 1.64 6.77 -51.93 -0.35 1.29 16 49 H 0.07 1.48 8.08 -51.93 -0.42 1.06 16 50 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.08 0.30 5.94 -51.93 -0.31 0.00 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -31.29 384.66 -9.10 -40.39 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -7.82 Total: 10.13 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -2.19 Total: 0.80 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: 0.07 Total: -64.51 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.29 -9.10 -40.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088344356.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.220 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds