Wall clock time and date at job start Wed Apr 1 2020 04:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32136 * 119.90328 * 2 1 4 4 C 1.32082 * 120.07421 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.06425 * 180.02562 * 4 3 2 6 6 C 1.39440 * 119.87022 * 0.02562 * 4 3 2 7 7 C 1.48149 * 120.09247 * 179.97438 * 6 4 3 8 8 O 1.21516 * 120.00351 * 6.33957 * 7 6 4 9 9 N 1.34778 * 120.00023 * 186.34098 * 7 6 4 10 10 C 1.46957 * 120.35117 * 359.97438 * 9 7 6 11 11 C 1.52346 * 109.08469 * 68.38325 * 10 9 7 12 12 C 1.53797 * 109.16481 * 72.70333 * 11 10 9 13 13 C 1.52453 * 109.41793 * 282.13003 * 12 11 10 14 14 C 1.53960 * 110.73364 * 113.72790 * 13 12 11 15 15 C 1.52871 * 109.71826 * 315.64825 * 14 13 12 16 16 H 1.09001 * 109.48518 * 47.10158 * 15 14 13 17 17 N 1.46506 * 109.48292 * 167.12681 * 15 14 13 18 18 C 1.36937 * 119.99839 * 205.00082 * 17 15 14 19 19 H 1.07997 * 120.00352 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99827 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00153 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00103 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47045 * 89.99992 * 22 20 18 24 24 H 1.48494 * 109.47176 * 210.00096 * 22 20 18 25 25 H 1.48500 * 109.47157 * 329.99932 * 22 20 18 26 26 C 1.45336 * 120.35514 * 179.72611 * 9 7 6 27 27 N 1.33002 * 119.80875 * 359.97438 * 6 4 3 28 28 C 1.31804 * 119.92319 * 359.72020 * 27 6 4 29 29 C 1.50703 * 119.93237 * 180.29399 * 28 27 6 30 30 H 1.09000 * 109.47173 * 90.00283 * 1 2 3 31 31 H 1.08991 * 109.47238 * 330.00408 * 1 2 3 32 32 H 1.09000 * 109.47287 * 209.99570 * 1 2 3 33 33 H 1.08996 * 109.47101 * 96.85556 * 5 4 3 34 34 H 1.09000 * 109.47256 * 216.85757 * 5 4 3 35 35 H 1.09003 * 109.47100 * 336.85239 * 5 4 3 36 36 H 1.09001 * 109.53562 * 188.26337 * 10 9 7 37 37 H 1.08999 * 109.54220 * 308.41873 * 10 9 7 38 38 H 1.09006 * 109.51632 * 192.60615 * 11 10 9 39 39 H 1.08996 * 109.52003 * 312.73161 * 11 10 9 40 40 H 1.08996 * 109.47820 * 42.11199 * 12 11 10 41 41 H 1.09001 * 109.47902 * 162.14486 * 12 11 10 42 42 H 1.08997 * 109.21928 * 234.05482 * 13 12 11 43 43 H 1.09003 * 109.22434 * 353.44504 * 13 12 11 44 44 H 1.09012 * 109.42753 * 75.72449 * 14 13 12 45 45 H 1.08996 * 109.43132 * 195.56543 * 14 13 12 46 46 H 0.97001 * 119.99937 * 24.98945 * 17 15 14 47 47 H 0.96999 * 120.00514 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.67794 * 343.07473 * 26 9 7 49 49 H 1.08998 * 109.67748 * 103.61841 * 26 9 7 50 50 H 1.09000 * 109.46747 * 270.26504 * 29 28 27 51 51 H 1.08995 * 109.47441 * 30.25919 * 29 28 27 52 52 H 1.09002 * 109.46789 * 150.26919 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4865 1.1494 0.0005 5 6 4.2376 2.4559 0.0011 6 6 4.1846 -0.0577 0.0005 7 6 5.6661 -0.0590 0.0005 8 8 6.2747 0.9863 0.1167 9 7 6.3389 -1.2197 -0.1284 10 6 5.6108 -2.4885 -0.2689 11 6 4.9029 -2.5098 -1.6177 12 6 5.9453 -2.7030 -2.7320 13 6 6.6590 -1.3814 -2.9931 14 6 8.1428 -1.4750 -2.5932 15 6 8.2692 -2.1755 -1.2403 16 1 7.6560 -3.0767 -1.2388 17 7 9.6695 -2.5369 -1.0061 18 6 9.9776 -3.5771 -0.1705 19 1 9.1883 -4.1308 0.3162 20 6 11.3043 -3.9200 0.0510 21 7 12.2662 -3.2456 -0.5426 22 14 11.7247 -5.3385 1.1914 23 1 11.7882 -6.5996 0.4100 24 1 13.0406 -5.0859 1.8313 25 1 10.6793 -5.4575 2.2394 26 6 7.7923 -1.2293 -0.1354 27 7 3.5166 -1.2078 0.0005 28 6 2.1986 -1.2026 0.0061 29 6 1.4414 -2.5056 0.0128 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 0.8899 0.5137 32 1 -0.3634 -0.8900 0.5138 33 1 4.5246 2.7095 1.0215 34 1 5.1318 2.3613 -0.6150 35 1 3.5996 3.2419 -0.4030 36 1 6.3133 -3.3200 -0.2128 37 1 4.8760 -2.5777 0.5312 38 1 4.1882 -3.3325 -1.6409 39 1 4.3778 -1.5667 -1.7684 40 1 6.6724 -3.4540 -2.4232 41 1 5.4464 -3.0330 -3.6432 42 1 6.5875 -1.1384 -4.0532 43 1 6.1800 -0.5938 -2.4113 44 1 8.6866 -2.0432 -3.3480 45 1 8.5633 -0.4719 -2.5229 46 1 10.3784 -2.0395 -1.4431 47 1 13.1934 -3.4848 -0.3876 48 1 8.1650 -0.2233 -0.3281 49 1 8.1616 -1.5798 0.8284 50 1 1.2587 -2.8248 -1.0133 51 1 2.0285 -3.2643 0.5302 52 1 0.4895 -2.3700 0.5261 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088344356.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:25 Heat of formation + Delta-G solvation = 31.431141 kcal Electronic energy + Delta-G solvation = -32697.628965 eV Core-core repulsion = 28697.863804 eV Total energy + Delta-G solvation = -3999.765161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.80737 -41.13925 -39.08837 -36.84829 -35.85059 -35.35092 -35.05455 -33.86089 -31.58618 -31.16963 -30.07398 -28.71532 -27.61306 -26.94482 -25.66109 -24.50891 -23.97157 -22.90074 -22.78503 -21.07943 -20.12103 -19.28341 -19.17564 -17.99088 -17.57247 -17.06066 -16.70601 -16.43421 -16.16684 -15.87401 -15.43521 -15.30848 -15.10634 -14.90638 -14.65396 -14.45204 -14.24735 -13.99723 -13.88950 -13.84121 -13.71716 -13.59659 -13.36851 -13.14997 -13.04914 -12.94850 -12.91751 -12.68279 -12.47083 -12.33257 -12.28280 -12.17250 -11.84538 -11.83487 -11.67222 -11.52323 -11.36741 -11.15317 -11.06435 -10.81766 -10.04241 -9.98474 -9.50277 -8.99339 -7.93808 -5.23578 -0.68008 -0.02777 1.47816 1.49384 1.57522 1.60739 1.86678 2.56343 2.58433 2.81640 2.94812 3.28867 3.39187 3.46871 3.74407 3.82432 3.87698 3.98889 4.02162 4.11858 4.21036 4.23282 4.30548 4.38449 4.53303 4.58471 4.62066 4.65370 4.70601 4.72320 4.77262 4.82547 4.84382 4.86442 4.90514 4.94849 5.02958 5.03316 5.13120 5.19440 5.22627 5.26549 5.30313 5.36906 5.38599 5.46199 5.53785 5.55774 5.69473 6.12715 6.26791 6.35232 6.64732 7.02604 7.33423 8.06363 8.30780 9.29622 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.003083 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.789599 B = 9078.663934 C = 9447.460768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.110 3.890 3 N -0.462 5.462 4 C 0.123 3.877 5 C -0.098 4.098 6 C 0.003 3.997 7 C 0.563 3.437 8 O -0.562 6.562 9 N -0.573 5.573 10 C 0.112 3.888 11 C -0.104 4.104 12 C -0.129 4.129 13 C -0.104 4.104 14 C -0.116 4.116 15 C 0.162 3.838 16 H 0.078 0.922 17 N -0.732 5.732 18 C -0.236 4.236 19 H 0.079 0.921 20 C -0.075 4.075 21 N -0.970 5.970 22 Si 0.971 3.029 23 H -0.285 1.285 24 H -0.300 1.300 25 H -0.268 1.268 26 C 0.104 3.896 27 N -0.393 5.393 28 C 0.061 3.939 29 C -0.100 4.100 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.058 0.942 45 H 0.045 0.955 46 H 0.372 0.628 47 H 0.250 0.750 48 H 0.062 0.938 49 H 0.044 0.956 50 H 0.101 0.899 51 H 0.082 0.918 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.960 2.527 -1.770 30.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.034 4.034 3 N -0.178 5.178 4 C -0.015 4.015 5 C -0.155 4.155 6 C -0.135 4.135 7 C 0.351 3.649 8 O -0.442 6.442 9 N -0.303 5.303 10 C -0.009 4.009 11 C -0.142 4.142 12 C -0.166 4.166 13 C -0.142 4.142 14 C -0.155 4.155 15 C 0.053 3.947 16 H 0.096 0.904 17 N -0.371 5.371 18 C -0.368 4.368 19 H 0.097 0.903 20 C -0.267 4.267 21 N -0.620 5.620 22 Si 0.800 3.200 23 H -0.212 1.212 24 H -0.227 1.227 25 H -0.193 1.193 26 C -0.022 4.022 27 N -0.111 5.111 28 C -0.084 4.084 29 C -0.157 4.157 30 H 0.122 0.878 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.080 0.920 49 H 0.063 0.937 50 H 0.119 0.881 51 H 0.101 0.899 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -29.550 2.930 -1.586 29.737 hybrid contribution 1.676 -0.024 0.547 1.764 sum -27.874 2.907 -1.039 28.044 Atomic orbital electron populations 1.21027 0.84348 1.05634 1.05185 1.23185 1.00462 0.88394 0.91359 1.68367 1.07126 1.30279 1.12031 1.22325 0.90410 0.96523 0.92245 1.20903 0.99490 0.91163 1.03993 1.21560 0.94528 0.91155 1.06289 1.17960 0.86095 0.83635 0.77250 1.90709 1.69440 1.31710 1.52319 1.47754 1.06415 1.07453 1.68726 1.22024 0.95317 0.83803 0.99766 1.21961 0.97062 1.02454 0.92755 1.21912 0.98270 0.96865 0.99582 1.21576 0.93871 0.98257 1.00527 1.21920 0.97371 0.99484 0.96686 1.20982 0.85766 0.95982 0.91956 0.90433 1.42615 1.02156 1.37396 1.54907 1.19591 0.91701 1.06820 1.18692 0.90273 1.25555 0.95837 1.02513 1.02782 1.69825 0.99000 1.44317 1.48889 0.85179 0.76953 0.79166 0.78717 1.21192 1.22672 1.19324 1.22114 0.78675 1.01183 1.00199 1.68856 1.09003 1.26726 1.06529 1.22965 0.89803 0.98637 0.97001 1.20951 0.99794 0.89837 1.05132 0.87839 0.90115 0.86687 0.90091 0.89362 0.89777 0.90726 0.88311 0.88632 0.92589 0.91732 0.90547 0.91639 0.93772 0.92333 0.93644 0.79664 0.94105 0.91998 0.93730 0.88064 0.89936 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 9.79 71.23 0.70 -0.03 16 2 C 0.11 1.81 6.79 42.63 0.29 2.10 16 3 N -0.46 -10.61 10.34 -170.48 -1.76 -12.38 16 4 C 0.12 3.28 6.82 42.81 0.29 3.58 16 5 C -0.10 -2.52 8.86 71.24 0.63 -1.89 16 6 C 0.00 0.08 5.73 41.89 0.24 0.32 16 7 C 0.56 18.93 6.17 86.88 0.54 19.47 16 8 O -0.56 -21.70 12.79 -3.77 -0.05 -21.75 16 9 N -0.57 -18.81 1.69 -827.72 -1.40 -20.21 16 10 C 0.11 2.98 4.88 86.08 0.42 3.40 16 11 C -0.10 -2.30 4.41 30.65 0.14 -2.16 16 12 C -0.13 -3.16 5.49 30.68 0.17 -2.99 16 13 C -0.10 -2.99 5.40 30.74 0.17 -2.83 16 14 C -0.12 -4.11 5.21 30.88 0.16 -3.95 16 15 C 0.16 6.43 2.29 44.98 0.10 6.53 16 16 H 0.08 2.95 3.29 -2.39 -0.01 2.95 16 17 N -0.73 -36.90 5.12 -323.00 -1.66 -38.55 16 18 C -0.24 -12.87 9.88 84.03 0.83 -12.04 16 19 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 21 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 22 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C 0.10 4.12 5.58 86.63 0.48 4.60 16 27 N -0.39 -8.76 4.22 -172.53 -0.73 -9.49 16 28 C 0.06 0.98 6.79 42.68 0.29 1.27 16 29 C -0.10 -0.68 9.78 71.24 0.70 0.02 16 30 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.11 0.13 5.93 -2.39 -0.01 0.11 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.09 2.61 5.87 -2.39 -0.01 2.59 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 2.12 6.07 -2.39 -0.01 2.11 16 37 H 0.10 2.43 6.27 -2.39 -0.01 2.41 16 38 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.06 1.35 4.89 -2.39 -0.01 1.34 16 40 H 0.06 1.80 5.47 -2.39 -0.01 1.79 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.04 1.38 5.38 -2.39 -0.01 1.37 16 44 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 45 H 0.04 1.69 7.85 -2.39 -0.02 1.67 16 46 H 0.37 20.49 7.80 -92.71 -0.72 19.77 16 47 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 48 H 0.06 2.67 6.77 -2.39 -0.02 2.66 16 49 H 0.04 1.97 8.08 -2.39 -0.02 1.95 16 50 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 51 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 52 H 0.11 0.14 5.94 -2.39 -0.01 0.13 16 Total: -1.00 -71.29 384.66 3.56 -67.73 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: 0.24 Total: 34.50 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 6.61 Total: 11.61 kcal Atomic # 7 Polarization: -134.74 SS G_CDS: -5.26 Total: -140.00 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -71.29 3.56 -67.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088344356.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.157 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds