Wall clock time and date at job start Wed Apr 1 2020 04:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34670 * 125.98841 * 2 1 4 4 N 1.36881 * 106.81796 * 180.18966 * 3 2 1 5 5 C 1.46497 * 126.40005 * 179.83653 * 4 3 2 6 6 C 1.52999 * 109.47399 * 292.48845 * 5 4 3 7 7 C 1.53005 * 109.46825 * 52.48452 * 5 4 3 8 8 C 1.50702 * 109.47251 * 172.48256 * 5 4 3 9 9 O 1.21281 * 120.00151 * 114.51935 * 8 5 4 10 10 N 1.34778 * 119.99995 * 294.51724 * 8 5 4 11 11 C 1.47216 * 126.70105 * 355.16468 * 10 8 5 12 12 C 1.54080 * 106.22202 * 148.66617 * 11 10 8 13 13 H 1.09000 * 112.46206 * 141.24885 * 12 11 10 14 14 C 1.53786 * 109.53082 * 266.28710 * 12 11 10 15 15 N 1.47214 * 106.37552 * 131.53634 * 14 12 11 16 16 C 1.36935 * 126.70088 * 148.72576 * 15 14 12 17 17 H 1.08004 * 119.99686 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00449 * 359.97438 * 16 15 14 19 19 N 1.31618 * 119.99282 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00291 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47322 * 59.99898 * 20 18 16 22 22 H 1.48503 * 109.47126 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46993 * 300.00063 * 20 18 16 24 24 C 1.47215 * 106.59373 * 328.72169 * 15 14 12 25 25 C 1.53783 * 106.37644 * 31.27925 * 24 15 14 26 26 C 1.52997 * 111.85984 * 104.04272 * 25 24 15 27 27 C 1.47209 * 126.70032 * 175.47937 * 10 8 5 28 28 C 1.35043 * 107.20395 * 359.58342 * 4 3 2 29 29 N 1.30501 * 108.69983 * 0.25576 * 28 4 3 30 30 H 1.09005 * 109.46343 * 270.29749 * 1 2 3 31 31 H 1.08996 * 109.46816 * 30.29712 * 1 2 3 32 32 H 1.08996 * 109.46746 * 150.30166 * 1 2 3 33 33 H 1.08003 * 126.59378 * 0.05212 * 3 2 1 34 34 H 1.09000 * 109.46675 * 299.99239 * 6 5 4 35 35 H 1.09008 * 109.46890 * 179.97438 * 6 5 4 36 36 H 1.08988 * 109.47419 * 59.99850 * 6 5 4 37 37 H 1.08998 * 109.47464 * 292.09331 * 7 5 4 38 38 H 1.09002 * 109.47240 * 52.09659 * 7 5 4 39 39 H 1.08997 * 109.47243 * 172.08993 * 7 5 4 40 40 H 1.08994 * 110.07490 * 267.97274 * 11 10 8 41 41 H 1.09002 * 110.07308 * 29.52144 * 11 10 8 42 42 H 1.08995 * 110.07356 * 12.30702 * 14 12 11 43 43 H 1.09005 * 110.11757 * 250.78799 * 14 12 11 44 44 H 0.97000 * 119.99692 * 179.97438 * 19 18 16 45 45 H 1.08997 * 110.07661 * 272.04653 * 24 15 14 46 46 H 1.09005 * 110.11860 * 150.52723 * 24 15 14 47 47 H 1.09003 * 109.47017 * 182.04714 * 26 25 24 48 48 H 1.09001 * 109.46856 * 302.04272 * 26 25 24 49 49 H 1.08995 * 109.47671 * 62.04331 * 26 25 24 50 50 H 1.08999 * 110.07596 * 330.47400 * 27 10 8 51 51 H 1.08996 * 110.08166 * 91.96678 * 27 10 8 52 52 H 1.08005 * 125.65261 * 180.29847 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0897 0.0000 4 7 3.5913 0.6402 -0.0043 5 6 4.7996 1.4685 -0.0093 6 6 4.9036 2.2109 -1.3430 7 6 4.7277 2.4822 1.1344 8 6 6.0111 0.5908 0.1728 9 8 6.8233 0.4849 -0.7216 10 7 6.1920 -0.0765 1.3298 11 6 5.3600 0.0201 2.5405 12 6 5.4159 -1.3652 3.2128 13 1 5.4647 -1.2990 4.2997 14 6 4.2215 -2.2128 2.7438 15 7 4.7705 -3.5196 2.3464 16 6 4.1408 -4.7325 2.4333 17 1 4.6480 -5.6288 2.1080 18 6 2.8506 -4.8101 2.9396 19 7 2.2324 -3.7177 3.3356 20 14 1.9920 -6.4647 3.0589 21 1 2.7773 -7.3677 3.9382 22 1 0.6336 -6.2775 3.6291 23 1 1.8827 -7.0644 1.7047 24 6 6.1286 -3.2678 1.8371 25 6 6.6669 -2.0573 2.6180 26 6 7.6779 -2.4736 3.6882 27 6 7.2638 -1.0394 1.6317 28 6 3.5450 -0.7094 0.0025 29 7 2.2952 -1.0852 0.0052 30 1 -0.3632 0.0053 1.0277 31 1 -0.3633 0.8873 -0.5184 32 1 -0.3633 -0.8927 -0.5091 33 1 1.9751 2.1202 0.0008 34 1 4.9549 1.4887 -2.1578 35 1 5.8025 2.8276 -1.3465 36 1 4.0275 2.8457 -1.4748 37 1 3.9369 3.2043 0.9308 38 1 4.5132 1.9621 2.0680 39 1 5.6817 3.0025 1.2193 40 1 5.7614 0.7803 3.2105 41 1 4.3326 0.2636 2.2700 42 1 3.7360 -1.7363 1.8922 43 1 3.5083 -2.3387 3.5585 44 1 1.3307 -3.7718 3.6890 45 1 6.0924 -3.0399 0.7718 46 1 6.7619 -4.1376 2.0121 47 1 8.0059 -1.5929 4.2404 48 1 7.2103 -3.1795 4.3747 49 1 8.5377 -2.9450 3.2122 50 1 7.5811 -1.5443 0.7193 51 1 8.1100 -0.5263 2.0887 52 1 4.4005 -1.3687 0.0060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091779808.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:29 Heat of formation + Delta-G solvation = 79.206801 kcal Electronic energy + Delta-G solvation = -34056.878136 eV Core-core repulsion = 30059.184682 eV Total energy + Delta-G solvation = -3997.693453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.20665 -40.34233 -38.73294 -35.79452 -35.02447 -32.82528 -31.62426 -30.92006 -30.13285 -30.05548 -27.81681 -27.13930 -26.28595 -25.72841 -25.10927 -23.39008 -22.24813 -21.23846 -20.25093 -19.77942 -19.12767 -18.52161 -17.64494 -16.71924 -16.31317 -15.56296 -15.26040 -15.08697 -14.69488 -14.44182 -13.94855 -13.83859 -13.69267 -13.57155 -13.41252 -13.22978 -12.99684 -12.89462 -12.62126 -12.60935 -12.41145 -12.20675 -12.16944 -11.97467 -11.74441 -11.70581 -11.62991 -11.57961 -11.23501 -10.95002 -10.89745 -10.71911 -10.12205 -10.11183 -9.98294 -9.85437 -9.67369 -9.44613 -9.35516 -9.18843 -8.64769 -8.57085 -7.91456 -6.75770 -5.52374 -2.97324 2.11469 2.35375 2.82553 3.14167 3.46998 3.51934 3.52441 3.62515 4.05514 4.46675 4.53060 4.57622 4.81965 4.90491 4.95047 5.07618 5.17953 5.22604 5.28283 5.36241 5.43090 5.46900 5.52578 5.56566 5.62357 5.62781 5.64922 5.68561 5.78010 5.80365 5.91269 5.93743 6.02308 6.04048 6.10471 6.17492 6.20652 6.28160 6.35118 6.38451 6.51126 6.55674 6.63472 6.77401 6.88480 7.13435 7.45243 7.49081 7.63767 7.68450 7.91846 7.96362 8.49302 8.60112 9.30073 9.91884 10.58049 11.47347 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010139 B = 0.005557 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.923298 B = 5037.038496 C = 7013.227215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.005 3.995 3 C -0.067 4.067 4 N -0.456 5.456 5 C 0.150 3.850 6 C -0.139 4.139 7 C -0.169 4.169 8 C 0.533 3.467 9 O -0.528 6.528 10 N -0.601 5.601 11 C 0.101 3.899 12 C -0.118 4.118 13 H 0.086 0.914 14 C 0.130 3.870 15 N -0.589 5.589 16 C -0.223 4.223 17 H 0.074 0.926 18 C -0.003 4.003 19 N -0.909 5.909 20 Si 0.912 3.088 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.144 3.856 25 C -0.087 4.087 26 C -0.121 4.121 27 C 0.118 3.882 28 C 0.209 3.791 29 N -0.459 5.459 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.167 0.833 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.038 0.962 43 H 0.119 0.881 44 H 0.251 0.749 45 H 0.013 0.987 46 H 0.042 0.958 47 H 0.049 0.951 48 H 0.066 0.934 49 H 0.052 0.948 50 H 0.079 0.921 51 H 0.065 0.935 52 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.204 15.345 -2.148 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 C -0.198 4.198 4 N -0.143 5.143 5 C 0.062 3.938 6 C -0.197 4.197 7 C -0.226 4.226 8 C 0.318 3.682 9 O -0.404 6.404 10 N -0.333 5.333 11 C -0.022 4.022 12 C -0.139 4.139 13 H 0.104 0.896 14 C 0.004 3.996 15 N -0.312 5.312 16 C -0.351 4.351 17 H 0.092 0.908 18 C -0.199 4.199 19 N -0.557 5.557 20 Si 0.743 3.257 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.213 1.213 24 C 0.017 3.983 25 C -0.089 4.089 26 C -0.178 4.178 27 C -0.004 4.004 28 C -0.073 4.073 29 N -0.176 5.176 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.184 0.816 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.055 0.945 43 H 0.137 0.863 44 H 0.062 0.938 45 H 0.030 0.970 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.072 0.928 50 H 0.098 0.902 51 H 0.083 0.917 52 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 5.232 14.475 -2.654 15.619 hybrid contribution 0.000 0.029 0.151 0.154 sum 5.231 14.504 -2.503 15.620 Atomic orbital electron populations 1.19970 0.88168 1.01897 1.02102 1.20741 0.96414 0.88618 1.06666 1.22115 0.82669 0.99952 1.15049 1.45592 1.05238 1.07321 1.56184 1.20920 0.82290 0.91193 0.99402 1.21973 1.02996 1.00470 0.94301 1.22486 1.03875 0.98529 0.97753 1.19741 0.86959 0.80273 0.81177 1.90727 1.45476 1.63360 1.40816 1.48489 1.29868 1.42038 1.12882 1.22563 0.95519 0.98770 0.85351 1.23219 0.98243 0.93037 0.99367 0.89619 1.22290 0.92104 0.83464 1.01741 1.44388 1.10632 1.03629 1.72529 1.18925 0.96458 0.83951 1.35803 0.90766 1.24697 0.96742 0.97065 1.01414 1.69573 1.13022 1.25049 1.48052 0.86203 0.78724 0.83160 0.77649 1.21461 1.21669 1.21285 1.21413 0.88642 0.93899 0.94326 1.22182 0.95285 0.96057 0.95378 1.21601 0.97589 1.00897 0.97752 1.22176 0.89223 0.89642 0.99406 1.24964 0.97460 0.80933 1.03923 1.70415 0.99882 1.29292 1.17972 0.91454 0.92075 0.91382 0.81587 0.90904 0.90266 0.91099 0.90484 0.89830 0.90332 0.91869 0.89794 0.94465 0.86349 0.93796 0.96995 0.93913 0.93216 0.91518 0.92850 0.90219 0.91681 0.78791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.42 36.01 0.38 -0.52 16 2 C 0.00 0.09 7.09 -82.85 -0.59 -0.50 16 3 C -0.07 -0.95 10.68 -16.56 -0.18 -1.13 16 4 N -0.46 -6.85 1.83 -105.82 -0.19 -7.04 16 5 C 0.15 1.91 0.79 -132.97 -0.10 1.80 16 6 C -0.14 -1.55 7.93 37.16 0.29 -1.25 16 7 C -0.17 -1.64 7.81 37.16 0.29 -1.35 16 8 C 0.53 8.13 5.48 -10.98 -0.06 8.07 16 9 O -0.53 -9.38 16.25 5.56 0.09 -9.29 16 10 N -0.60 -8.93 2.73 -171.39 -0.47 -9.40 16 11 C 0.10 1.46 4.04 -3.09 -0.01 1.45 16 12 C -0.12 -2.05 3.70 -88.67 -0.33 -2.38 16 13 H 0.09 1.45 7.91 -51.93 -0.41 1.04 16 14 C 0.13 2.96 5.71 -3.24 -0.02 2.94 16 15 N -0.59 -14.50 3.39 -171.12 -0.58 -15.08 16 16 C -0.22 -6.15 10.34 -15.06 -0.16 -6.31 16 17 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 18 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 19 N -0.91 -26.14 10.08 55.49 0.56 -25.58 16 20 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.14 2.93 6.37 -3.24 -0.02 2.91 16 25 C -0.09 -1.41 1.09 -152.72 -0.17 -1.57 16 26 C -0.12 -1.68 8.50 37.16 0.32 -1.36 16 27 C 0.12 1.74 5.92 -3.24 -0.02 1.72 16 28 C 0.21 3.99 7.56 -90.37 -0.68 3.31 16 29 N -0.46 -9.69 11.00 -10.87 -0.12 -9.81 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.17 1.72 8.06 -52.48 -0.42 1.30 16 34 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 35 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.07 0.64 8.10 -51.94 -0.42 0.22 16 37 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 38 H 0.08 0.88 4.70 -51.93 -0.24 0.64 16 39 H 0.08 0.67 8.13 -51.93 -0.42 0.24 16 40 H 0.06 0.76 7.89 -51.93 -0.41 0.35 16 41 H 0.08 1.32 4.20 -51.93 -0.22 1.11 16 42 H 0.04 0.88 3.67 -51.93 -0.19 0.69 16 43 H 0.12 3.17 5.44 -51.93 -0.28 2.89 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.01 0.26 7.39 -51.93 -0.38 -0.12 16 46 H 0.04 0.85 7.82 -51.93 -0.41 0.45 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.08 1.26 7.34 -51.93 -0.38 0.88 16 51 H 0.06 0.84 7.88 -51.93 -0.41 0.43 16 52 H 0.20 4.09 6.81 -52.48 -0.36 3.74 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -32.30 389.66 -9.32 -41.62 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -8.30 Total: 5.69 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -1.15 Total: 5.65 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -0.80 Total: -66.92 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.30 -9.32 -41.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091779808.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.826 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds