Wall clock time and date at job start Wed Apr 1 2020 04:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34670 * 125.98841 * 2 1 4 4 N 1.36881 * 106.81796 * 180.18966 * 3 2 1 5 5 C 1.46497 * 126.40005 * 179.83653 * 4 3 2 6 6 C 1.52999 * 109.47399 * 292.48845 * 5 4 3 7 7 C 1.53005 * 109.46825 * 52.48452 * 5 4 3 8 8 C 1.50702 * 109.47251 * 172.48256 * 5 4 3 9 9 O 1.21281 * 120.00151 * 114.51935 * 8 5 4 10 10 N 1.34778 * 119.99995 * 294.51724 * 8 5 4 11 11 C 1.47216 * 126.70105 * 355.16468 * 10 8 5 12 12 C 1.54080 * 106.22202 * 148.66617 * 11 10 8 13 13 H 1.09000 * 112.46206 * 141.24885 * 12 11 10 14 14 C 1.53786 * 109.53082 * 266.28710 * 12 11 10 15 15 N 1.47214 * 106.37552 * 131.53634 * 14 12 11 16 16 C 1.36935 * 126.70088 * 148.72576 * 15 14 12 17 17 H 1.08004 * 119.99686 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00449 * 359.97438 * 16 15 14 19 19 N 1.31618 * 119.99282 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00291 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47322 * 59.99898 * 20 18 16 22 22 H 1.48503 * 109.47126 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46993 * 300.00063 * 20 18 16 24 24 C 1.47215 * 106.59373 * 328.72169 * 15 14 12 25 25 C 1.53783 * 106.37644 * 31.27925 * 24 15 14 26 26 C 1.52997 * 111.85984 * 104.04272 * 25 24 15 27 27 C 1.47209 * 126.70032 * 175.47937 * 10 8 5 28 28 C 1.35043 * 107.20395 * 359.58342 * 4 3 2 29 29 N 1.30501 * 108.69983 * 0.25576 * 28 4 3 30 30 H 1.09005 * 109.46343 * 270.29749 * 1 2 3 31 31 H 1.08996 * 109.46816 * 30.29712 * 1 2 3 32 32 H 1.08996 * 109.46746 * 150.30166 * 1 2 3 33 33 H 1.08003 * 126.59378 * 0.05212 * 3 2 1 34 34 H 1.09000 * 109.46675 * 299.99239 * 6 5 4 35 35 H 1.09008 * 109.46890 * 179.97438 * 6 5 4 36 36 H 1.08988 * 109.47419 * 59.99850 * 6 5 4 37 37 H 1.08998 * 109.47464 * 292.09331 * 7 5 4 38 38 H 1.09002 * 109.47240 * 52.09659 * 7 5 4 39 39 H 1.08997 * 109.47243 * 172.08993 * 7 5 4 40 40 H 1.08994 * 110.07490 * 267.97274 * 11 10 8 41 41 H 1.09002 * 110.07308 * 29.52144 * 11 10 8 42 42 H 1.08995 * 110.07356 * 12.30702 * 14 12 11 43 43 H 1.09005 * 110.11757 * 250.78799 * 14 12 11 44 44 H 0.97000 * 119.99692 * 179.97438 * 19 18 16 45 45 H 1.08997 * 110.07661 * 272.04653 * 24 15 14 46 46 H 1.09005 * 110.11860 * 150.52723 * 24 15 14 47 47 H 1.09003 * 109.47017 * 182.04714 * 26 25 24 48 48 H 1.09001 * 109.46856 * 302.04272 * 26 25 24 49 49 H 1.08995 * 109.47671 * 62.04331 * 26 25 24 50 50 H 1.08999 * 110.07596 * 330.47400 * 27 10 8 51 51 H 1.08996 * 110.08166 * 91.96678 * 27 10 8 52 52 H 1.08005 * 125.65261 * 180.29847 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0897 0.0000 4 7 3.5913 0.6402 -0.0043 5 6 4.7996 1.4685 -0.0093 6 6 4.9036 2.2109 -1.3430 7 6 4.7277 2.4822 1.1344 8 6 6.0111 0.5908 0.1728 9 8 6.8233 0.4849 -0.7216 10 7 6.1920 -0.0765 1.3298 11 6 5.3600 0.0201 2.5405 12 6 5.4159 -1.3652 3.2128 13 1 5.4647 -1.2990 4.2997 14 6 4.2215 -2.2128 2.7438 15 7 4.7705 -3.5196 2.3464 16 6 4.1408 -4.7325 2.4333 17 1 4.6480 -5.6288 2.1080 18 6 2.8506 -4.8101 2.9396 19 7 2.2324 -3.7177 3.3356 20 14 1.9920 -6.4647 3.0589 21 1 2.7773 -7.3677 3.9382 22 1 0.6336 -6.2775 3.6291 23 1 1.8827 -7.0644 1.7047 24 6 6.1286 -3.2678 1.8371 25 6 6.6669 -2.0573 2.6180 26 6 7.6779 -2.4736 3.6882 27 6 7.2638 -1.0394 1.6317 28 6 3.5450 -0.7094 0.0025 29 7 2.2952 -1.0852 0.0052 30 1 -0.3632 0.0053 1.0277 31 1 -0.3633 0.8873 -0.5184 32 1 -0.3633 -0.8927 -0.5091 33 1 1.9751 2.1202 0.0008 34 1 4.9549 1.4887 -2.1578 35 1 5.8025 2.8276 -1.3465 36 1 4.0275 2.8457 -1.4748 37 1 3.9369 3.2043 0.9308 38 1 4.5132 1.9621 2.0680 39 1 5.6817 3.0025 1.2193 40 1 5.7614 0.7803 3.2105 41 1 4.3326 0.2636 2.2700 42 1 3.7360 -1.7363 1.8922 43 1 3.5083 -2.3387 3.5585 44 1 1.3307 -3.7718 3.6890 45 1 6.0924 -3.0399 0.7718 46 1 6.7619 -4.1376 2.0121 47 1 8.0059 -1.5929 4.2404 48 1 7.2103 -3.1795 4.3747 49 1 8.5377 -2.9450 3.2122 50 1 7.5811 -1.5443 0.7193 51 1 8.1100 -0.5263 2.0887 52 1 4.4005 -1.3687 0.0060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091779808.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:28 Heat of formation + Delta-G solvation = 59.744771 kcal Electronic energy + Delta-G solvation = -34057.722073 eV Core-core repulsion = 30059.184682 eV Total energy + Delta-G solvation = -3998.537390 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.44543 -41.64055 -40.07714 -36.94103 -36.61439 -34.45840 -32.74862 -32.56825 -31.67926 -31.40402 -28.70364 -28.25088 -27.80806 -27.17226 -26.62634 -24.75269 -23.66260 -22.51893 -21.92135 -20.99977 -20.43693 -19.85110 -18.95003 -18.55914 -17.51792 -16.96822 -16.59511 -16.36570 -16.25684 -15.81647 -15.57728 -15.26476 -15.04401 -14.86395 -14.72976 -14.33439 -14.29106 -13.98577 -13.79103 -13.59930 -13.50783 -13.30685 -13.27670 -13.24141 -13.21699 -13.05059 -12.94400 -12.81618 -12.75879 -12.64276 -12.38315 -12.29085 -12.02833 -11.73827 -11.45882 -11.41055 -11.16705 -11.07787 -10.70202 -10.69180 -10.46845 -9.82941 -9.18000 -8.75756 -7.64332 -5.10920 0.94407 1.12789 1.44811 1.48565 1.53647 1.69191 1.99585 2.26837 2.52607 2.95937 3.38052 3.46198 3.48178 3.59536 3.70451 3.73928 3.85501 3.89565 3.99035 4.14832 4.25779 4.33922 4.38937 4.45286 4.54663 4.56611 4.60903 4.64899 4.69190 4.70698 4.73048 4.77915 4.83482 4.90874 4.94464 4.98201 5.02447 5.05104 5.10763 5.16868 5.18656 5.19857 5.31582 5.34293 5.48024 5.54181 5.82534 5.92941 5.98438 6.21437 6.29263 6.48330 6.78259 7.19642 7.30182 7.87719 8.54069 9.31104 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010139 B = 0.005557 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.923298 B = 5037.038496 C = 7013.227215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.035 4.035 3 C -0.031 4.031 4 N -0.443 5.443 5 C 0.147 3.853 6 C -0.135 4.135 7 C -0.165 4.165 8 C 0.527 3.473 9 O -0.559 6.559 10 N -0.601 5.601 11 C 0.113 3.887 12 C -0.113 4.113 13 H 0.095 0.905 14 C 0.131 3.869 15 N -0.610 5.610 16 C -0.237 4.237 17 H 0.071 0.929 18 C -0.055 4.055 19 N -0.927 5.927 20 Si 0.969 3.031 21 H -0.276 1.276 22 H -0.293 1.293 23 H -0.289 1.289 24 C 0.142 3.858 25 C -0.074 4.074 26 C -0.114 4.114 27 C 0.121 3.879 28 C 0.189 3.811 29 N -0.515 5.515 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.046 0.954 33 H 0.219 0.781 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.077 0.923 44 H 0.242 0.758 45 H -0.006 1.006 46 H 0.041 0.959 47 H 0.081 0.919 48 H 0.044 0.956 49 H 0.068 0.932 50 H 0.063 0.937 51 H 0.100 0.900 52 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.259 19.006 -1.471 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.164 4.164 3 C -0.163 4.163 4 N -0.129 5.129 5 C 0.060 3.940 6 C -0.193 4.193 7 C -0.222 4.222 8 C 0.314 3.686 9 O -0.437 6.437 10 N -0.332 5.332 11 C -0.010 4.010 12 C -0.134 4.134 13 H 0.113 0.887 14 C 0.006 3.994 15 N -0.334 5.334 16 C -0.366 4.366 17 H 0.088 0.912 18 C -0.248 4.248 19 N -0.576 5.576 20 Si 0.798 3.202 21 H -0.202 1.202 22 H -0.219 1.219 23 H -0.216 1.216 24 C 0.016 3.984 25 C -0.076 4.076 26 C -0.172 4.172 27 C -0.001 4.001 28 C -0.093 4.093 29 N -0.234 5.234 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.066 0.934 33 H 0.235 0.765 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.095 0.905 44 H 0.052 0.948 45 H 0.012 0.988 46 H 0.060 0.940 47 H 0.100 0.900 48 H 0.063 0.937 49 H 0.087 0.913 50 H 0.082 0.918 51 H 0.118 0.882 52 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.332 18.147 -1.969 19.321 hybrid contribution -0.319 -1.145 -0.145 1.198 sum 6.013 17.002 -2.114 18.157 Atomic orbital electron populations 1.20012 0.86623 1.02830 1.02127 1.21315 0.97782 0.88668 1.08636 1.22775 0.81356 1.01233 1.10905 1.45672 1.06595 1.06089 1.54555 1.21238 0.79919 0.90837 1.01957 1.22001 1.05132 1.00028 0.92146 1.22535 1.06157 0.97901 0.95590 1.20262 0.87462 0.80311 0.80533 1.90710 1.46871 1.64615 1.41528 1.48538 1.29771 1.41792 1.13132 1.22504 0.95345 0.97667 0.85459 1.23063 0.96126 0.94084 1.00099 0.88654 1.22092 0.93701 0.83657 0.99956 1.44614 1.12308 1.03521 1.72917 1.19212 0.96967 0.85247 1.35202 0.91153 1.25411 0.97492 1.00001 1.01933 1.69883 1.12532 1.26382 1.48823 0.85304 0.77551 0.79962 0.77353 1.20229 1.21935 1.21583 1.21542 0.87001 0.95995 0.93882 1.22068 0.95461 0.94301 0.95780 1.21564 0.96999 1.01888 0.96703 1.22158 0.90039 0.89490 0.98408 1.24184 0.96073 0.82508 1.06539 1.70289 1.01421 1.32317 1.19378 0.91861 0.88081 0.93449 0.76490 0.93650 0.88799 0.88180 0.87593 0.90588 0.88352 0.87659 0.90980 0.95230 0.90504 0.94792 0.98821 0.94039 0.90002 0.93659 0.91263 0.91807 0.88239 0.81914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.61 10.42 71.24 0.74 -0.87 16 2 C -0.04 -1.21 7.09 41.39 0.29 -0.92 16 3 C -0.03 -0.79 10.68 83.09 0.89 0.10 16 4 N -0.44 -12.72 1.83 -488.70 -0.89 -13.62 16 5 C 0.15 3.35 0.79 2.86 0.00 3.35 16 6 C -0.14 -2.58 7.93 71.98 0.57 -2.01 16 7 C -0.16 -2.40 7.81 71.98 0.56 -1.84 16 8 C 0.53 15.40 5.48 87.66 0.48 15.88 16 9 O -0.56 -19.58 16.25 -3.03 -0.05 -19.63 16 10 N -0.60 -16.95 2.73 -814.56 -2.23 -19.18 16 11 C 0.11 3.04 4.04 86.61 0.35 3.39 16 12 C -0.11 -3.88 3.70 -9.53 -0.04 -3.92 16 13 H 0.10 3.09 7.91 -2.39 -0.02 3.07 16 14 C 0.13 6.26 5.71 86.51 0.49 6.76 16 15 N -0.61 -31.63 3.39 -695.32 -2.36 -33.99 16 16 C -0.24 -13.72 10.34 84.03 0.87 -12.85 16 17 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.05 -3.19 5.49 84.86 0.47 -2.73 16 19 N -0.93 -56.05 10.08 21.65 0.22 -55.84 16 20 Si 0.97 47.83 29.55 68.60 2.03 49.85 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 23 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 24 C 0.14 6.01 6.37 86.51 0.55 6.56 16 25 C -0.07 -2.34 1.09 -51.02 -0.06 -2.40 16 26 C -0.11 -2.92 8.50 71.98 0.61 -2.31 16 27 C 0.12 3.38 5.92 86.51 0.51 3.89 16 28 C 0.19 7.52 7.56 180.26 1.36 8.88 16 29 N -0.52 -22.89 11.00 -188.31 -2.07 -24.96 16 30 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.22 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.04 1.12 8.04 -2.39 -0.02 1.10 16 35 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.10 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.11 0.98 8.06 -2.39 -0.02 0.97 16 38 H 0.08 1.27 4.70 -2.39 -0.01 1.26 16 39 H 0.10 1.12 8.13 -2.39 -0.02 1.10 16 40 H 0.11 2.05 7.89 -2.39 -0.02 2.03 16 41 H 0.07 2.18 4.20 -2.39 -0.01 2.17 16 42 H 0.03 1.48 3.67 -2.39 -0.01 1.47 16 43 H 0.08 4.35 5.44 -2.38 -0.01 4.33 16 44 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 45 H -0.01 -0.26 7.39 -2.39 -0.02 -0.28 16 46 H 0.04 1.72 7.82 -2.38 -0.02 1.70 16 47 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.06 2.00 7.34 -2.39 -0.02 1.98 16 51 H 0.10 2.16 7.88 -2.39 -0.02 2.14 16 52 H 0.16 7.43 6.81 -2.91 -0.02 7.41 16 Total: -1.00 -78.55 389.66 4.23 -74.32 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.92 Total: 24.07 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 8.67 Total: 18.96 kcal Atomic # 7 Polarization: -140.25 SS G_CDS: -7.33 Total: -147.58 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.05 Total: -19.63 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.85 kcal Total: -78.55 4.23 -74.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091779808.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.067 kcal (2) G-P(sol) polarization free energy of solvation -78.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds