Wall clock time and date at job start Wed Apr 1 2020 03:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34258 * 126.29342 * 2 1 4 4 H 0.97000 * 125.75265 * 0.02562 * 3 2 1 5 5 N 1.39931 * 108.49233 * 179.80492 * 3 2 1 6 6 C 1.30442 * 108.89860 * 0.37030 * 5 3 2 7 7 C 1.50703 * 125.99196 * 179.90082 * 6 5 3 8 8 C 1.53002 * 109.46737 * 59.69128 * 7 6 5 9 9 C 1.52994 * 109.47168 * 299.68925 * 7 6 5 10 10 C 1.38043 * 126.28935 * 180.02562 * 2 1 3 11 11 C 1.47426 * 126.41904 * 359.95416 * 10 2 1 12 12 O 1.21604 * 120.00125 * 270.03064 * 11 10 2 13 13 N 1.34778 * 120.00143 * 90.02332 * 11 10 2 14 14 C 1.47217 * 126.69591 * 0.03438 * 13 11 10 15 15 C 1.53789 * 106.37370 * 211.26102 * 14 13 11 16 16 H 1.09004 * 111.85457 * 103.09927 * 15 14 13 17 17 C 1.53779 * 109.34699 * 228.52967 * 15 14 13 18 18 N 1.46513 * 106.73350 * 95.37326 * 17 15 14 19 19 C 1.36935 * 126.31924 * 210.72879 * 18 17 15 20 20 H 1.08004 * 119.99639 * 161.00483 * 19 18 17 21 21 C 1.38807 * 120.00029 * 340.99654 * 19 18 17 22 22 N 1.31625 * 119.99873 * 159.59309 * 21 19 18 23 23 Si 1.86803 * 120.00135 * 339.59539 * 21 19 18 24 24 H 1.48497 * 109.47029 * 84.64847 * 23 21 19 25 25 H 1.48500 * 109.46787 * 204.64309 * 23 21 19 26 26 H 1.48493 * 109.46941 * 324.64518 * 23 21 19 27 27 C 1.47209 * 106.96958 * 29.89573 * 18 17 15 28 28 C 1.53786 * 106.37876 * 329.55654 * 27 18 17 29 29 C 1.52999 * 111.86352 * 140.62117 * 28 27 18 30 30 C 1.47208 * 126.70739 * 179.71362 * 13 11 10 31 31 H 1.09003 * 109.47117 * 269.97476 * 1 2 3 32 32 H 1.09007 * 109.46802 * 29.97432 * 1 2 3 33 33 H 1.08998 * 109.47334 * 149.97263 * 1 2 3 34 34 H 1.08998 * 109.47331 * 179.68624 * 7 6 5 35 35 H 1.09001 * 109.47525 * 59.99935 * 8 7 6 36 36 H 1.08998 * 109.46798 * 299.99822 * 8 7 6 37 37 H 1.08998 * 109.47244 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.46916 * 179.97438 * 9 7 6 39 39 H 1.08991 * 109.47683 * 299.99526 * 9 7 6 40 40 H 1.09004 * 109.47304 * 60.00361 * 9 7 6 41 41 H 1.09001 * 110.07617 * 330.48749 * 14 13 11 42 42 H 1.08997 * 110.07540 * 91.97926 * 14 13 11 43 43 H 1.09004 * 110.07147 * 213.19928 * 17 15 14 44 44 H 1.09003 * 110.07187 * 334.73783 * 17 15 14 45 45 H 0.97003 * 119.99789 * 180.02562 * 22 21 19 46 46 H 1.09000 * 110.08066 * 210.32327 * 27 18 17 47 47 H 1.09007 * 110.12148 * 88.80816 * 27 18 17 48 48 H 1.08998 * 109.46897 * 302.06233 * 29 28 27 49 49 H 1.08998 * 109.46855 * 62.05788 * 29 28 27 50 50 H 1.08992 * 109.47024 * 182.06089 * 29 28 27 51 51 H 1.09002 * 110.07832 * 267.96001 * 30 13 11 52 52 H 1.09004 * 110.07213 * 29.49695 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3017 1.0821 0.0000 4 1 2.0027 2.0049 0.0004 5 7 3.6340 0.6543 0.0045 6 6 3.6590 -0.6498 -0.0008 7 6 4.8951 -1.5119 -0.0006 8 6 5.7261 -1.2116 1.2485 9 6 5.7259 -1.2126 -1.2500 10 6 2.3240 -1.1127 -0.0005 11 6 1.8858 -2.5203 -0.0002 12 8 1.7052 -3.1007 1.0531 13 7 1.6852 -3.1639 -1.1672 14 6 1.8587 -2.6083 -2.5194 15 6 0.8339 -3.3227 -3.4164 16 1 -0.0278 -2.6905 -3.6312 17 6 1.5334 -3.8216 -4.6918 18 7 1.9018 -5.2192 -4.4516 19 6 2.9815 -5.8756 -4.9793 20 1 3.3392 -6.7844 -4.5182 21 6 3.6162 -5.3729 -6.1068 22 7 4.8506 -5.7362 -6.3841 23 14 2.7186 -4.1809 -7.2306 24 1 2.8593 -2.8005 -6.7015 25 1 3.3032 -4.2504 -8.5939 26 1 1.2801 -4.5443 -7.2897 27 6 0.9035 -5.7730 -3.5222 28 6 0.4344 -4.6026 -2.6418 29 6 -1.0702 -4.6611 -2.3704 30 6 1.2563 -4.5616 -1.3388 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3633 0.8903 -0.5135 33 1 -0.3634 -0.8897 -0.5142 34 1 4.6053 -2.5627 -0.0002 35 1 5.1342 -1.4249 2.1386 36 1 6.0159 -0.1609 1.2481 37 1 6.6204 -1.8348 1.2485 38 1 6.6201 -1.8358 -1.2496 39 1 5.1340 -1.4265 -2.1398 40 1 6.0158 -0.1618 -1.2504 41 1 1.6649 -1.5357 -2.5109 42 1 2.8698 -2.8027 -2.8770 43 1 0.8453 -3.7812 -5.5361 44 1 2.4147 -3.2138 -4.8972 45 1 5.2943 -5.3847 -7.1718 46 1 1.3570 -6.5478 -2.9041 47 1 0.0608 -6.1840 -4.0783 48 1 -1.6107 -4.6532 -3.3169 49 1 -1.3057 -5.5751 -1.8251 50 1 -1.3660 -3.7969 -1.7758 51 1 2.1266 -5.2127 -1.4214 52 1 0.6371 -4.8691 -0.4960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092183798.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:48 Heat of formation + Delta-G solvation = 33.956890 kcal Electronic energy + Delta-G solvation = -32769.144977 eV Core-core repulsion = 28769.489341 eV Total energy + Delta-G solvation = -3999.655637 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.63978 -41.50283 -39.55398 -36.81060 -36.68391 -34.55681 -33.28624 -32.99275 -31.94091 -31.68673 -28.65313 -28.11468 -27.94628 -27.19892 -27.10766 -24.35177 -24.19298 -22.77852 -22.34885 -20.46756 -20.14207 -19.91096 -18.72849 -18.58318 -17.77452 -17.34380 -16.63426 -16.47158 -16.04925 -15.99075 -15.78632 -15.48967 -15.40923 -14.95769 -14.77341 -14.38936 -14.29203 -14.19844 -13.90786 -13.88457 -13.58415 -13.52388 -13.45417 -13.31149 -13.16091 -13.08226 -12.83869 -12.59020 -12.51220 -12.32117 -12.23493 -12.09870 -12.06122 -11.86719 -11.68767 -11.55981 -11.47800 -11.26912 -11.09450 -10.80002 -10.43081 -9.77051 -9.66903 -9.03854 -8.14111 -5.42050 0.65767 1.30259 1.31038 1.41554 1.45605 1.50001 1.71071 2.11625 2.43600 3.06855 3.24905 3.35396 3.37575 3.52879 3.59170 3.77612 3.85680 3.98135 4.12884 4.13796 4.14888 4.19556 4.28757 4.32838 4.40334 4.42063 4.62065 4.66319 4.71043 4.72087 4.76185 4.82972 4.83641 4.86615 4.87391 4.90515 4.90613 4.98417 5.02054 5.06050 5.12227 5.18620 5.19703 5.23842 5.26314 5.33879 5.40189 5.47617 5.71019 6.13356 6.26250 6.48407 6.54264 6.78254 7.07765 7.56388 8.14866 9.05813 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010783 B = 0.004232 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.142762 B = 6615.248977 C = 7660.269188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.148 3.852 3 N -0.447 5.447 4 H 0.458 0.542 5 N -0.305 5.305 6 C 0.118 3.882 7 C -0.023 4.023 8 C -0.133 4.133 9 C -0.135 4.135 10 C -0.310 4.310 11 C 0.620 3.380 12 O -0.578 6.578 13 N -0.599 5.599 14 C 0.122 3.878 15 C -0.095 4.095 16 H 0.128 0.872 17 C 0.112 3.888 18 N -0.621 5.621 19 C -0.228 4.228 20 H 0.056 0.944 21 C -0.037 4.037 22 N -0.959 5.959 23 Si 0.945 3.055 24 H -0.268 1.268 25 H -0.313 1.313 26 H -0.262 1.262 27 C 0.141 3.859 28 C -0.072 4.072 29 C -0.118 4.118 30 C 0.123 3.877 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.045 0.955 43 H 0.031 0.969 44 H 0.044 0.956 45 H 0.261 0.739 46 H 0.044 0.956 47 H 0.043 0.957 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.046 0.954 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.314 16.105 12.828 23.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.014 3.986 3 N -0.156 5.156 4 H 0.306 0.694 5 N -0.127 5.127 6 C -0.049 4.049 7 C -0.043 4.043 8 C -0.190 4.190 9 C -0.193 4.193 10 C -0.325 4.325 11 C 0.409 3.591 12 O -0.458 6.458 13 N -0.330 5.330 14 C -0.001 4.001 15 C -0.115 4.115 16 H 0.146 0.854 17 C -0.014 4.014 18 N -0.346 5.346 19 C -0.356 4.356 20 H 0.074 0.926 21 C -0.231 4.231 22 N -0.606 5.606 23 Si 0.773 3.227 24 H -0.194 1.194 25 H -0.242 1.242 26 H -0.186 1.186 27 C 0.016 3.984 28 C -0.074 4.074 29 C -0.175 4.175 30 C 0.000 4.000 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.064 0.936 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.484 16.864 13.334 24.374 hybrid contribution 0.008 -0.418 -0.977 1.063 sum -11.476 16.445 12.357 23.556 Atomic orbital electron populations 1.20739 0.83659 1.05897 1.05239 1.21749 0.95817 0.85699 0.95316 1.45977 1.03166 1.09026 1.57389 0.69367 1.76978 0.97099 1.11862 1.26722 1.22297 0.94150 0.91512 0.96937 1.19674 0.90479 0.96112 0.98050 1.21733 0.99466 1.02721 0.95121 1.21741 0.99532 1.02649 0.95371 1.19805 0.93813 0.92934 1.25955 1.17113 0.75389 0.85161 0.81440 1.90737 1.53897 1.69334 1.31828 1.48494 1.65796 1.13015 1.05689 1.22060 0.98546 0.98773 0.80690 1.22836 0.98228 0.96517 0.93923 0.85412 1.21768 0.97220 0.86110 0.96286 1.44647 1.28293 1.07518 1.54105 1.18526 1.02775 1.07572 1.06749 0.92624 1.25603 0.96640 1.01357 0.99468 1.69963 1.12016 1.49703 1.28959 0.85984 0.79208 0.79718 0.77756 1.19380 1.24158 1.18637 1.21591 0.91259 0.94618 0.90928 1.22126 0.97313 0.94811 0.93123 1.21649 0.90320 1.02962 1.02601 1.22125 0.97772 0.82247 0.97817 0.88287 0.86912 0.89733 0.91827 0.93253 0.91457 0.90535 0.90990 0.94020 0.91286 0.89101 0.93685 0.95178 0.93736 0.93015 0.93802 0.93893 0.91055 0.91305 0.91107 0.93568 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.25 71.24 0.73 -0.34 16 2 C 0.15 2.86 7.29 42.14 0.31 3.17 16 3 N -0.45 -7.86 7.29 -46.79 -0.34 -8.20 16 4 H 0.46 4.25 8.96 -213.43 -1.91 2.33 16 5 N -0.30 -7.61 12.63 -46.67 -0.59 -8.20 16 6 C 0.12 3.30 5.77 43.52 0.25 3.56 16 7 C -0.02 -0.62 3.31 -11.54 -0.04 -0.66 16 8 C -0.13 -3.09 9.18 71.98 0.66 -2.43 16 9 C -0.14 -3.57 9.18 71.98 0.66 -2.91 16 10 C -0.31 -8.53 4.74 -20.15 -0.10 -8.62 16 11 C 0.62 19.81 6.73 86.66 0.58 20.40 16 12 O -0.58 -22.18 17.34 -4.04 -0.07 -22.25 16 13 N -0.60 -18.19 3.32 -818.36 -2.71 -20.90 16 14 C 0.12 3.59 6.29 86.51 0.54 4.14 16 15 C -0.09 -2.68 3.69 -9.63 -0.04 -2.72 16 16 H 0.13 2.68 7.88 -2.39 -0.02 2.66 16 17 C 0.11 4.32 4.07 86.64 0.35 4.68 16 18 N -0.62 -28.25 3.18 -697.10 -2.22 -30.47 16 19 C -0.23 -12.84 10.65 84.03 0.89 -11.95 16 20 H 0.06 3.46 8.06 -2.91 -0.02 3.43 16 21 C -0.04 -2.12 5.44 84.86 0.46 -1.66 16 22 N -0.96 -60.32 13.97 21.65 0.30 -60.02 16 23 Si 0.94 45.58 24.36 68.60 1.67 47.25 16 24 H -0.27 -12.00 6.38 99.48 0.63 -11.37 16 25 H -0.31 -15.49 7.11 99.48 0.71 -14.78 16 26 H -0.26 -11.94 6.52 99.48 0.65 -11.30 16 27 C 0.14 5.07 6.24 86.51 0.54 5.61 16 28 C -0.07 -1.99 1.09 -50.91 -0.06 -2.04 16 29 C -0.12 -2.30 8.45 71.98 0.61 -1.70 16 30 C 0.12 3.78 6.15 86.62 0.53 4.32 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.08 1.08 7.96 -2.39 -0.02 1.06 16 34 H 0.06 2.02 7.56 -2.39 -0.02 2.00 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.09 2.24 7.51 -2.39 -0.02 2.22 16 42 H 0.04 1.63 7.40 -2.39 -0.02 1.62 16 43 H 0.03 1.17 6.06 -2.38 -0.01 1.16 16 44 H 0.04 1.91 5.26 -2.39 -0.01 1.90 16 45 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 46 H 0.04 1.64 7.56 -2.39 -0.02 1.62 16 47 H 0.04 1.46 7.87 -2.38 -0.02 1.44 16 48 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 49 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.05 1.69 7.47 -2.39 -0.02 1.67 16 52 H 0.09 2.47 7.62 -2.38 -0.02 2.45 16 Total: -1.00 -76.96 405.67 1.82 -75.14 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -1.12 Total: 16.83 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 6.90 Total: 10.83 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -5.56 Total: -127.79 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.07 Total: -22.25 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.67 Total: 47.25 kcal Total: -76.96 1.82 -75.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092183798.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.098 kcal (2) G-P(sol) polarization free energy of solvation -76.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds