Wall clock time and date at job start Wed Apr 1 2020 04:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34856 * 125.96593 * 2 1 4 4 N 1.36129 * 106.75094 * 180.02562 * 3 2 1 5 5 C 1.35614 * 107.39230 * 359.90326 * 4 3 2 6 6 N 1.30088 * 108.57644 * 0.07689 * 5 4 3 7 7 C 1.51047 * 124.03478 * 179.97438 * 5 4 3 8 8 C 1.53402 * 108.20877 * 344.17272 * 7 5 4 9 9 H 1.08996 * 109.55608 * 288.86977 * 8 7 5 10 10 C 1.50708 * 109.50920 * 168.74907 * 8 7 5 11 11 O 1.21279 * 119.99857 * 240.24488 * 10 8 7 12 12 N 1.34773 * 119.99657 * 60.23639 * 10 8 7 13 13 C 1.46506 * 119.99798 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.46792 * 180.02562 * 13 12 10 15 15 H 1.08997 * 110.89261 * 51.12191 * 14 13 12 16 16 C 1.54906 * 111.00693 * 287.19535 * 14 13 12 17 17 N 1.47421 * 104.83422 * 204.92051 * 16 14 13 18 18 C 1.36942 * 125.64758 * 204.17527 * 17 16 14 19 19 H 1.07996 * 120.00257 * 359.96933 * 18 17 16 20 20 C 1.38811 * 119.99631 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00496 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99589 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47108 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47063 * 120.00013 * 22 20 18 25 25 H 1.48504 * 109.46949 * 239.99778 * 22 20 18 26 26 C 1.47016 * 108.70599 * 24.13011 * 17 16 14 27 27 C 1.54332 * 107.26923 * 358.94204 * 26 17 16 28 28 H 1.08996 * 110.72028 * 96.16883 * 27 26 17 29 29 C 1.52998 * 110.87100 * 219.37310 * 27 26 17 30 30 C 1.53147 * 109.23731 * 48.82599 * 8 7 5 31 31 C 1.46471 * 127.92795 * 180.27756 * 4 3 2 32 32 H 1.09001 * 109.47209 * 269.99365 * 1 2 3 33 33 H 1.08998 * 109.46910 * 29.99283 * 1 2 3 34 34 H 1.08999 * 109.47050 * 149.99597 * 1 2 3 35 35 H 1.07996 * 126.65111 * 359.96825 * 3 2 1 36 36 H 1.09002 * 109.71556 * 224.50068 * 7 5 4 37 37 H 1.08994 * 109.71493 * 103.85252 * 7 5 4 38 38 H 0.97001 * 120.00198 * 0.02562 * 12 10 8 39 39 H 1.08995 * 109.47493 * 300.00615 * 13 12 10 40 40 H 1.08997 * 109.47010 * 60.00690 * 13 12 10 41 41 H 1.09007 * 110.37096 * 323.76050 * 16 14 13 42 42 H 1.09002 * 110.36809 * 86.07992 * 16 14 13 43 43 H 0.97001 * 120.00101 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.88368 * 239.52652 * 26 17 16 45 45 H 1.08998 * 109.88647 * 118.35607 * 26 17 16 46 46 H 1.08999 * 109.46984 * 173.60907 * 29 27 26 47 47 H 1.09002 * 109.47251 * 293.60940 * 29 27 26 48 48 H 1.09002 * 109.47295 * 53.60654 * 29 27 26 49 49 H 1.08999 * 109.46855 * 170.50397 * 30 8 7 50 50 H 1.08999 * 109.47018 * 50.51497 * 30 8 7 51 51 H 1.09002 * 109.58349 * 42.78990 * 31 4 3 52 52 H 1.09005 * 109.58201 * 282.51621 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5845 0.6435 -0.0006 5 6 3.5413 -0.7120 0.0013 6 7 2.2957 -1.0870 0.0012 7 6 4.7655 -1.5968 0.0008 8 6 5.9747 -0.7418 -0.3995 9 1 5.9085 -0.4888 -1.4576 10 6 7.2435 -1.5143 -0.1452 11 8 8.0729 -1.0811 0.6264 12 7 7.4564 -2.6866 -0.7752 13 6 8.6901 -3.4372 -0.5284 14 6 8.6817 -4.7203 -1.3619 15 1 8.4609 -4.5034 -2.4070 16 6 7.6800 -5.7511 -0.7842 17 7 8.1835 -7.0608 -1.2362 18 6 7.4328 -8.1965 -1.3849 19 1 6.3761 -8.1781 -1.1629 20 6 8.0302 -9.3712 -1.8208 21 7 9.3180 -9.3935 -2.0917 22 14 7.0059 -10.9201 -2.0242 23 1 5.5959 -10.6328 -1.6579 24 1 7.0685 -11.3729 -3.4371 25 1 7.5395 -11.9862 -1.1387 26 6 9.6249 -6.9457 -1.5021 27 6 10.0265 -5.4818 -1.2240 28 1 10.4276 -5.3768 -0.2159 29 6 11.0373 -4.9875 -2.2608 30 6 5.9824 0.5429 0.4341 31 6 4.8149 1.4381 0.0048 32 1 -0.3634 -0.0001 1.0277 33 1 -0.3633 0.8900 -0.5137 34 1 -0.3633 -0.8899 -0.5139 35 1 1.9764 2.1221 -0.0005 36 1 4.6339 -2.4063 -0.7172 37 1 4.9210 -2.0100 0.9973 38 1 6.7932 -3.0329 -1.3925 39 1 9.5488 -2.8275 -0.8093 40 1 8.7554 -3.6913 0.5295 41 1 7.6718 -5.7031 0.3048 42 1 6.6804 -5.5717 -1.1801 43 1 9.7355 -10.2145 -2.3959 44 1 9.8309 -7.1953 -2.5430 45 1 10.1782 -7.6137 -0.8420 46 1 11.2187 -3.9229 -2.1125 47 1 11.9728 -5.5349 -2.1459 48 1 10.6404 -5.1524 -3.2625 49 1 6.9224 1.0719 0.2775 50 1 5.8785 0.2917 1.4897 51 1 4.7120 2.2660 0.7063 52 1 5.0022 1.8281 -0.9957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092730416.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:49 Heat of formation + Delta-G solvation = 9.555939 kcal Electronic energy + Delta-G solvation = -30464.639153 eV Core-core repulsion = 26463.925412 eV Total energy + Delta-G solvation = -4000.713741 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.31350 -41.05379 -39.63532 -37.36123 -36.04738 -34.77236 -34.25510 -32.53460 -32.44043 -30.96277 -29.80307 -28.28407 -27.75160 -26.59299 -25.13848 -24.59142 -23.56218 -21.80098 -21.58474 -21.24970 -20.55596 -20.06827 -18.86896 -18.09789 -17.83523 -17.20529 -16.88839 -16.55225 -16.48117 -15.92621 -15.61713 -15.19706 -15.14815 -15.07780 -14.80397 -14.61469 -14.48204 -14.34300 -14.12277 -13.83392 -13.50172 -13.43728 -13.22034 -13.11896 -13.09743 -12.85315 -12.80781 -12.69129 -12.57684 -12.40596 -12.24311 -12.11463 -11.89786 -11.83656 -11.55060 -11.40122 -11.34985 -10.92168 -10.79816 -10.70237 -10.46312 -10.05974 -9.11297 -8.88271 -7.84457 -5.19618 1.09142 1.45737 1.46279 1.56413 1.56722 1.87150 2.08927 2.14448 2.49442 3.17194 3.33676 3.50104 3.51630 3.60258 3.63120 3.80127 3.95516 3.97062 4.00955 4.09189 4.16146 4.27183 4.35794 4.39516 4.47616 4.51945 4.53420 4.62427 4.65869 4.74769 4.77203 4.84801 4.87135 4.89227 4.91364 4.99017 5.04185 5.09272 5.10890 5.17704 5.18146 5.36044 5.39273 5.40549 5.48632 5.51129 5.73158 5.83097 5.89827 6.21432 6.25696 6.53093 7.11753 7.18009 7.20416 7.79473 8.43446 9.25849 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.002386 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.024479 B =11730.389029 C =13910.835503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.042 4.042 3 C -0.043 4.043 4 N -0.454 5.454 5 C 0.194 3.806 6 N -0.528 5.528 7 C -0.021 4.021 8 C -0.099 4.099 9 H 0.128 0.872 10 C 0.524 3.476 11 O -0.574 6.574 12 N -0.716 5.716 13 C 0.145 3.855 14 C -0.090 4.090 15 H 0.090 0.910 16 C 0.136 3.864 17 N -0.630 5.630 18 C -0.239 4.239 19 H 0.082 0.918 20 C -0.068 4.068 21 N -0.951 5.951 22 Si 0.976 3.024 23 H -0.266 1.266 24 H -0.291 1.291 25 H -0.294 1.294 26 C 0.192 3.808 27 C -0.102 4.102 28 H 0.074 0.926 29 C -0.127 4.127 30 C -0.112 4.112 31 C 0.104 3.896 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.208 0.792 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.412 0.588 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.017 0.983 42 H 0.048 0.952 43 H 0.246 0.754 44 H 0.016 0.984 45 H -0.002 1.002 46 H 0.077 0.923 47 H 0.052 0.948 48 H 0.048 0.952 49 H 0.109 0.891 50 H 0.067 0.933 51 H 0.117 0.883 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 28.191 1.526 29.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.170 4.170 3 C -0.176 4.176 4 N -0.137 5.137 5 C -0.069 4.069 6 N -0.248 5.248 7 C -0.060 4.060 8 C -0.121 4.121 9 H 0.145 0.855 10 C 0.310 3.690 11 O -0.454 6.454 12 N -0.367 5.367 13 C 0.020 3.980 14 C -0.110 4.110 15 H 0.108 0.892 16 C 0.011 3.989 17 N -0.356 5.356 18 C -0.368 4.368 19 H 0.100 0.900 20 C -0.261 4.261 21 N -0.600 5.600 22 Si 0.804 3.196 23 H -0.190 1.190 24 H -0.218 1.218 25 H -0.222 1.222 26 C 0.067 3.933 27 C -0.122 4.122 28 H 0.092 0.908 29 C -0.184 4.184 30 C -0.150 4.150 31 C -0.016 4.016 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.225 0.775 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.249 0.751 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.034 0.966 45 H 0.016 0.984 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.127 0.873 50 H 0.085 0.915 51 H 0.135 0.865 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.718 27.591 2.016 29.006 hybrid contribution -0.290 -1.119 -0.235 1.180 sum -9.007 26.472 1.781 28.019 Atomic orbital electron populations 1.20041 0.86420 1.03086 1.02437 1.21364 0.97792 0.88558 1.09283 1.22779 0.82437 1.01376 1.11023 1.45594 1.07593 1.06971 1.53525 1.23254 0.94448 0.82709 1.06459 1.69898 1.01082 1.32344 1.21484 1.20093 0.86040 0.95632 1.04240 1.21385 0.90791 0.95734 1.04174 0.85465 1.20627 0.87983 0.80927 0.79427 1.90703 1.47950 1.69440 1.37297 1.46026 1.22349 1.21748 1.46546 1.21156 0.87030 0.90794 0.98979 1.22473 0.95632 0.92866 0.99979 0.89169 1.21782 0.96484 0.84676 0.95915 1.44809 1.05811 1.06772 1.78199 1.19489 0.92302 0.87760 1.37235 0.90031 1.25634 0.97253 1.00977 1.02205 1.70195 1.10492 1.26651 1.52685 0.85046 0.78306 0.79382 0.76843 1.18999 1.21829 1.22155 1.20980 0.83599 0.91586 0.97183 1.22317 0.95090 0.94716 1.00028 0.90806 1.21635 0.97873 1.01311 0.97612 1.21689 0.99119 0.94251 0.99907 1.22277 0.79908 0.94040 1.05403 0.91269 0.89070 0.92516 0.77483 0.87617 0.89721 0.75125 0.90385 0.92433 0.96543 0.93395 0.94501 0.96589 0.98397 0.90395 0.92878 0.93320 0.87314 0.91460 0.86538 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.42 71.24 0.74 -0.21 16 2 C -0.04 -0.88 7.10 41.40 0.29 -0.58 16 3 C -0.04 -0.65 11.55 83.25 0.96 0.31 16 4 N -0.45 -7.10 3.14 -513.81 -1.61 -8.71 16 5 C 0.19 4.16 7.65 138.17 1.06 5.21 16 6 N -0.53 -14.10 11.24 -175.54 -1.97 -16.07 16 7 C -0.02 -0.37 5.47 30.09 0.16 -0.20 16 8 C -0.10 -1.40 2.55 -11.35 -0.03 -1.42 16 9 H 0.13 1.27 8.12 -2.39 -0.02 1.25 16 10 C 0.52 10.69 7.13 87.66 0.63 11.32 16 11 O -0.57 -15.90 15.83 -3.03 -0.05 -15.95 16 12 N -0.72 -14.38 5.41 -463.06 -2.50 -16.88 16 13 C 0.14 3.54 5.13 86.38 0.44 3.99 16 14 C -0.09 -2.69 2.49 -9.40 -0.02 -2.71 16 15 H 0.09 2.58 8.05 -2.39 -0.02 2.56 16 16 C 0.14 5.24 6.65 86.85 0.58 5.82 16 17 N -0.63 -32.07 3.39 -691.99 -2.35 -34.42 16 18 C -0.24 -13.42 10.28 84.03 0.86 -12.56 16 19 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 20 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 21 N -0.95 -57.72 10.31 21.65 0.22 -57.50 16 22 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 26 C 0.19 9.36 4.97 86.73 0.43 9.79 16 27 C -0.10 -3.52 3.01 -9.60 -0.03 -3.55 16 28 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 29 C -0.13 -3.61 9.17 71.98 0.66 -2.95 16 30 C -0.11 -1.33 4.67 30.73 0.14 -1.19 16 31 C 0.10 0.85 6.98 86.47 0.60 1.45 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.11 1.76 7.95 -2.39 -0.02 1.75 16 37 H 0.08 1.68 8.11 -2.39 -0.02 1.66 16 38 H 0.41 6.90 8.20 -92.71 -0.76 6.14 16 39 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 40 H 0.06 1.59 7.96 -2.39 -0.02 1.57 16 41 H 0.02 0.66 7.91 -2.38 -0.02 0.64 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 44 H 0.02 0.87 7.02 -2.39 -0.02 0.85 16 45 H 0.00 -0.13 7.51 -2.39 -0.02 -0.14 16 46 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 47 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.05 1.45 8.07 -2.39 -0.02 1.43 16 49 H 0.11 1.20 7.79 -2.39 -0.02 1.18 16 50 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 51 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 52 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 Total: -1.00 -79.19 411.10 1.86 -77.33 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.14 Total: 14.80 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 7.95 Total: 9.07 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -8.22 Total: -133.58 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.05 Total: -15.95 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -79.19 1.86 -77.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092730416.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.889 kcal (2) G-P(sol) polarization free energy of solvation -79.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds