Wall clock time and date at job start Wed Apr 1 2020 03:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30838 * 125.90044 * 2 1 4 4 N 1.40076 * 108.20541 * 180.25928 * 3 2 1 5 5 H 0.97001 * 126.03826 * 179.74169 * 4 3 2 6 6 C 1.34946 * 107.92838 * 359.71532 * 4 3 2 7 7 C 1.50702 * 126.13029 * 179.97438 * 6 4 3 8 8 C 1.35321 * 107.74250 * 0.02562 * 6 4 3 9 9 C 1.50702 * 126.03564 * 180.02562 * 8 6 4 10 10 H 1.08997 * 109.47367 * 1.34355 * 9 8 6 11 11 C 1.53005 * 109.46548 * 241.34413 * 9 8 6 12 12 C 1.50701 * 109.47183 * 121.34660 * 9 8 6 13 13 O 1.21281 * 119.99923 * 359.97438 * 12 9 8 14 14 N 1.34770 * 119.99963 * 179.97438 * 12 9 8 15 15 C 1.46498 * 120.00039 * 179.97438 * 14 12 9 16 16 C 1.54175 * 111.61626 * 298.58437 * 15 14 12 17 17 C 1.56224 * 103.64895 * 260.32933 * 16 15 14 18 18 C 1.54855 * 103.17314 * 322.65717 * 17 16 15 19 19 C 1.54179 * 104.29898 * 37.76816 * 18 17 16 20 20 H 1.08998 * 112.24858 * 98.78691 * 19 18 17 21 21 C 1.53797 * 109.12207 * 223.08169 * 19 18 17 22 22 N 1.47223 * 106.35326 * 132.67326 * 21 19 18 23 23 C 1.36936 * 126.69970 * 148.78565 * 22 21 19 24 24 H 1.08001 * 120.00135 * 353.19610 * 23 22 21 25 25 C 1.38819 * 120.00259 * 173.19639 * 23 22 21 26 26 N 1.31611 * 120.00557 * 156.94771 * 25 23 22 27 27 Si 1.86799 * 119.99609 * 336.95132 * 25 23 22 28 28 H 1.48497 * 109.47595 * 93.09791 * 27 25 23 29 29 H 1.48497 * 109.46954 * 213.09939 * 27 25 23 30 30 H 1.48506 * 109.47212 * 333.09544 * 27 25 23 31 31 C 1.47222 * 106.60127 * 328.76440 * 22 21 19 32 32 H 1.09006 * 109.47217 * 277.09117 * 1 2 3 33 33 H 1.09000 * 109.47620 * 37.09188 * 1 2 3 34 34 H 1.09002 * 109.47390 * 157.09536 * 1 2 3 35 35 H 1.09004 * 109.47051 * 270.03223 * 7 6 4 36 36 H 1.08997 * 109.46549 * 30.02594 * 7 6 4 37 37 H 1.08993 * 109.47360 * 150.02941 * 7 6 4 38 38 H 1.08998 * 109.46660 * 183.88042 * 11 9 8 39 39 H 1.08999 * 109.47091 * 303.87905 * 11 9 8 40 40 H 1.08996 * 109.47014 * 63.88142 * 11 9 8 41 41 H 0.97003 * 120.00192 * 359.97438 * 14 12 9 42 42 H 1.09006 * 110.46461 * 20.29462 * 16 15 14 43 43 H 1.08995 * 110.47124 * 142.88478 * 16 15 14 44 44 H 1.09001 * 110.87130 * 204.05268 * 17 16 15 45 45 H 1.08998 * 110.39517 * 81.03689 * 17 16 15 46 46 H 1.09000 * 110.46673 * 279.06096 * 18 17 16 47 47 H 1.09006 * 110.46473 * 156.47075 * 18 17 16 48 48 H 1.08999 * 110.08288 * 13.45089 * 21 19 18 49 49 H 1.08998 * 110.07721 * 251.89122 * 21 19 18 50 50 H 0.96999 * 120.00555 * 180.02562 * 26 25 23 51 51 H 1.08998 * 110.07518 * 272.01391 * 31 22 21 52 52 H 1.08995 * 110.07957 * 150.46084 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0060 5 1 4.3908 1.2079 -0.0109 6 6 3.6142 -0.7154 -0.0032 7 6 4.8350 -1.5990 -0.0083 8 6 2.3271 -1.1330 0.0037 9 6 1.8599 -2.5658 0.0094 10 1 2.7241 -3.2296 0.0312 11 6 1.0383 -2.8392 -1.2520 12 6 1.0070 -2.8112 1.2274 13 8 0.7994 -1.9114 2.0137 14 7 0.4750 -4.0306 1.4429 15 6 -0.3536 -4.2693 2.6272 16 6 0.4389 -4.0423 3.9301 17 6 0.8347 -5.4859 4.3772 18 6 -0.4109 -6.3257 4.0013 19 6 -0.8901 -5.7198 2.6670 20 1 -0.5531 -6.2978 1.8066 21 6 -2.4220 -5.5863 2.6956 22 7 -2.7286 -4.2270 2.2207 23 6 -3.8432 -3.8336 1.5291 24 1 -4.5533 -4.5710 1.1849 25 6 -4.0604 -2.4872 1.2706 26 7 -4.8294 -2.1257 0.2655 27 14 -3.2611 -1.1883 2.3491 28 1 -1.9685 -0.7724 1.7479 29 1 -4.1597 -0.0107 2.4542 30 1 -3.0197 -1.7490 3.7029 31 6 -1.6033 -3.3729 2.6349 32 1 -0.3634 0.1269 1.0199 33 1 -0.3634 0.8197 -0.6198 34 1 -0.3634 -0.9466 -0.4000 35 1 5.1239 -1.8137 -1.0372 36 1 5.6538 -1.0901 0.5003 37 1 4.6103 -2.5320 0.5083 38 1 0.6429 -3.8543 -1.2150 39 1 0.2130 -2.1296 -1.3090 40 1 1.6739 -2.7287 -2.1306 41 1 0.6408 -4.7501 0.8139 42 1 1.3149 -3.4219 3.7401 43 1 -0.1966 -3.5842 4.6879 44 1 1.0162 -5.5237 5.4513 45 1 1.7112 -5.8272 3.8265 46 1 -1.1827 -6.2254 4.7644 47 1 -0.1387 -7.3728 3.8684 48 1 -2.7904 -5.7193 3.7128 49 1 -2.8744 -6.3248 2.0337 50 1 -4.9809 -1.1849 0.0846 51 1 -1.7784 -2.9836 3.6378 52 1 -1.4784 -2.5507 1.9303 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099083838.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:29 Heat of formation + Delta-G solvation = 37.270979 kcal Electronic energy + Delta-G solvation = -33410.483099 eV Core-core repulsion = 29410.971172 eV Total energy + Delta-G solvation = -3999.511927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.53624 -41.57011 -39.54715 -36.39051 -35.36389 -34.62454 -34.20576 -33.78409 -31.47431 -30.89284 -29.62205 -29.14763 -27.64311 -26.75233 -26.19713 -25.05937 -23.03666 -21.89855 -21.24217 -21.16905 -20.40296 -19.94462 -18.84772 -18.54708 -17.74991 -17.32290 -16.81003 -16.31020 -16.20889 -15.92016 -15.66253 -15.41354 -15.08170 -14.79914 -14.72970 -14.62119 -14.36741 -14.24303 -13.75823 -13.71427 -13.70211 -13.36087 -13.31423 -13.19733 -13.06737 -12.98850 -12.81836 -12.59951 -12.43996 -12.32946 -12.17415 -11.88407 -11.87416 -11.77490 -11.52345 -11.33623 -11.32257 -11.23021 -10.93490 -10.49455 -10.18978 -9.86840 -9.34009 -9.13462 -8.18340 -5.37794 0.89331 1.29136 1.35332 1.37318 1.63389 1.83318 1.97816 2.37054 2.43078 3.02350 3.34154 3.40501 3.61923 3.70161 3.73661 3.86687 3.96284 4.07008 4.24233 4.26635 4.28054 4.37199 4.42471 4.44470 4.49914 4.55964 4.56296 4.58999 4.77349 4.79053 4.80328 4.82582 4.89058 4.90158 4.98266 5.04207 5.06077 5.07675 5.13091 5.14496 5.20395 5.23674 5.32624 5.34226 5.39913 5.53914 5.60220 5.66454 5.82294 6.07066 6.48499 6.71606 6.72868 6.78731 7.49770 7.54891 8.12993 8.99329 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010423 B = 0.005206 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.635983 B = 5377.386198 C = 7033.570757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.096 3.904 3 N -0.343 5.343 4 N -0.469 5.469 5 H 0.450 0.550 6 C 0.108 3.892 7 C -0.090 4.090 8 C -0.237 4.237 9 C -0.018 4.018 10 H 0.141 0.859 11 C -0.145 4.145 12 C 0.508 3.492 13 O -0.566 6.566 14 N -0.700 5.700 15 C 0.170 3.830 16 C -0.119 4.119 17 C -0.107 4.107 18 C -0.108 4.108 19 C -0.091 4.091 20 H 0.113 0.887 21 C 0.130 3.870 22 N -0.625 5.625 23 C -0.219 4.219 24 H 0.078 0.922 25 C -0.026 4.026 26 N -0.949 5.949 27 Si 0.917 3.083 28 H -0.270 1.270 29 H -0.322 1.322 30 H -0.277 1.277 31 C 0.107 3.893 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.035 0.965 40 H 0.089 0.911 41 H 0.413 0.587 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.101 0.899 48 H 0.032 0.968 49 H 0.057 0.943 50 H 0.258 0.742 51 H 0.009 0.991 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.455 -9.218 -0.002 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.069 4.069 3 N -0.167 5.167 4 N -0.179 5.179 5 H 0.297 0.703 6 C -0.022 4.022 7 C -0.148 4.148 8 C -0.248 4.248 9 C -0.040 4.040 10 H 0.159 0.841 11 C -0.202 4.202 12 C 0.295 3.705 13 O -0.444 6.444 14 N -0.353 5.353 15 C 0.082 3.918 16 C -0.158 4.158 17 C -0.145 4.145 18 C -0.145 4.145 19 C -0.111 4.111 20 H 0.131 0.869 21 C 0.005 3.995 22 N -0.350 5.350 23 C -0.348 4.348 24 H 0.095 0.905 25 C -0.220 4.220 26 N -0.597 5.597 27 Si 0.750 3.250 28 H -0.197 1.197 29 H -0.252 1.252 30 H -0.203 1.203 31 C -0.019 4.019 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.108 0.892 41 H 0.250 0.750 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.082 0.918 47 H 0.120 0.880 48 H 0.050 0.950 49 H 0.075 0.925 50 H 0.067 0.933 51 H 0.026 0.974 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 25.156 -7.174 0.434 26.162 hybrid contribution -0.640 1.085 0.332 1.303 sum 24.516 -6.089 0.767 25.272 Atomic orbital electron populations 1.20275 0.88642 1.02643 1.01519 1.21985 0.96036 0.91482 0.97418 1.77187 0.88156 1.22940 1.28445 1.46076 1.06591 1.05464 1.59795 0.70343 1.21454 0.97329 0.85025 0.98365 1.20691 0.90927 0.97863 1.05330 1.19311 0.91769 0.94821 1.18914 1.19571 0.98965 0.93208 0.92259 0.84133 1.21915 0.99682 1.02195 0.96437 1.21191 0.80019 0.81795 0.87498 1.90703 1.60922 1.44167 1.48600 1.45830 1.50885 1.12764 1.25809 1.21443 0.88781 0.95380 0.86193 1.22845 0.99358 0.99000 0.94612 1.22698 0.98215 0.91908 1.01636 1.22441 0.97400 1.00425 0.94262 1.22764 0.94343 0.93009 1.00949 0.86934 1.21812 0.94480 0.85789 0.97407 1.45068 1.18711 1.06235 1.64993 1.18697 0.99365 0.92052 1.24647 0.90453 1.25080 0.99652 0.98058 0.99259 1.69925 1.44422 1.16317 1.29005 0.86541 0.77220 0.79903 0.81331 1.19668 1.25204 1.20280 1.22174 0.88376 0.94944 0.96401 0.93108 0.91420 0.90925 0.87590 0.89103 0.88451 0.90446 0.94640 0.89247 0.74959 0.91646 0.93511 0.90330 0.89507 0.91789 0.88024 0.95013 0.92471 0.93273 0.97370 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.97 8.77 71.24 0.62 -2.34 16 2 C 0.10 3.47 6.52 43.10 0.28 3.75 16 3 N -0.34 -11.79 12.70 -47.39 -0.60 -12.39 16 4 N -0.47 -11.10 7.36 -48.00 -0.35 -11.46 16 5 H 0.45 7.02 8.96 -213.33 -1.91 5.11 16 6 C 0.11 2.28 7.21 41.41 0.30 2.58 16 7 C -0.09 -0.82 10.07 71.24 0.72 -0.10 16 8 C -0.24 -6.65 4.38 -20.14 -0.09 -6.74 16 9 C -0.02 -0.42 2.85 -12.28 -0.03 -0.46 16 10 H 0.14 2.00 6.78 -2.39 -0.02 1.99 16 11 C -0.14 -3.36 8.99 71.98 0.65 -2.71 16 12 C 0.51 16.16 5.57 87.66 0.49 16.65 16 13 O -0.57 -23.62 11.64 -3.03 -0.04 -23.66 16 14 N -0.70 -19.74 5.10 -417.30 -2.13 -21.87 16 15 C 0.17 5.59 0.94 4.85 0.00 5.59 16 16 C -0.12 -3.56 5.75 32.11 0.18 -3.37 16 17 C -0.11 -2.09 6.92 32.35 0.22 -1.87 16 18 C -0.11 -2.14 6.38 31.63 0.20 -1.94 16 19 C -0.09 -2.42 3.67 -9.55 -0.03 -2.46 16 20 H 0.11 2.39 7.69 -2.39 -0.02 2.37 16 21 C 0.13 4.74 6.79 86.51 0.59 5.33 16 22 N -0.63 -30.58 3.32 -695.23 -2.31 -32.89 16 23 C -0.22 -12.86 10.69 84.04 0.90 -11.96 16 24 H 0.08 4.75 8.06 -2.91 -0.02 4.72 16 25 C -0.03 -1.62 5.47 84.87 0.46 -1.15 16 26 N -0.95 -61.85 13.97 21.65 0.30 -61.55 16 27 Si 0.92 52.35 24.43 68.60 1.68 54.02 16 28 H -0.27 -15.34 4.94 99.48 0.49 -14.85 16 29 H -0.32 -18.76 7.11 99.48 0.71 -18.05 16 30 H -0.28 -15.71 5.66 99.48 0.56 -15.14 16 31 C 0.11 4.97 3.51 86.51 0.30 5.28 16 32 H 0.05 2.42 6.25 -2.38 -0.01 2.40 16 33 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.07 3.02 4.88 -2.39 -0.01 3.01 16 35 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.10 0.72 7.12 -2.39 -0.02 0.70 16 38 H 0.08 1.55 7.45 -2.39 -0.02 1.53 16 39 H 0.03 1.09 5.17 -2.39 -0.01 1.08 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.41 8.48 7.65 -92.71 -0.71 7.77 16 42 H 0.06 2.07 6.69 -2.38 -0.02 2.05 16 43 H 0.05 1.60 7.18 -2.39 -0.02 1.59 16 44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.06 1.41 7.17 -2.39 -0.02 1.39 16 47 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 48 H 0.03 1.15 7.12 -2.39 -0.02 1.13 16 49 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 51 H 0.01 0.45 5.25 -2.39 -0.01 0.43 16 52 H 0.04 2.35 3.43 -2.39 -0.01 2.34 16 Total: -1.00 -87.77 380.98 0.31 -87.45 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -2.01 Total: 18.27 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 5.77 Total: 4.07 kcal Atomic # 7 Polarization: -135.07 SS G_CDS: -5.09 Total: -140.15 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.04 Total: -23.66 kcal Atomic # 14 Polarization: 52.35 SS G_CDS: 1.68 Total: 54.02 kcal Total: -87.77 0.31 -87.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099083838.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.725 kcal (2) G-P(sol) polarization free energy of solvation -87.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds