Wall clock time and date at job start Wed Apr 1 2020 04:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34858 * 125.96432 * 2 1 4 4 N 1.36306 * 106.69158 * 180.02562 * 3 2 1 5 5 C 1.35423 * 107.39908 * 0.03641 * 4 3 2 6 6 N 1.30097 * 108.62827 * 359.94807 * 5 4 3 7 7 C 1.51062 * 124.00011 * 179.81657 * 5 4 3 8 8 C 1.53396 * 108.19157 * 344.11101 * 7 5 4 9 9 H 1.08999 * 109.50763 * 288.82290 * 8 7 5 10 10 C 1.50708 * 109.50946 * 168.72953 * 8 7 5 11 11 O 1.21275 * 119.99682 * 240.09701 * 10 8 7 12 12 N 1.34774 * 119.99885 * 60.09372 * 10 8 7 13 13 C 1.48318 * 127.76753 * 179.89077 * 12 10 8 14 14 C 1.54385 * 104.53517 * 219.52907 * 13 12 10 15 15 H 1.09008 * 110.33784 * 95.18696 * 14 13 12 16 16 C 1.53001 * 110.34322 * 217.33155 * 14 13 12 17 17 N 1.46496 * 109.47205 * 292.13172 * 16 14 13 18 18 C 1.36945 * 119.99718 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.54284 * 105.05736 * 336.26139 * 14 13 12 27 27 H 1.08999 * 110.34410 * 240.97122 * 26 14 13 28 28 C 1.52999 * 110.34316 * 118.81587 * 26 14 13 29 29 C 1.48139 * 127.83894 * 359.97438 * 12 10 8 30 30 C 1.53149 * 109.27500 * 48.77895 * 8 7 5 31 31 C 1.46473 * 127.77980 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.46796 * 269.99891 * 1 2 3 33 33 H 1.09000 * 109.47067 * 30.00041 * 1 2 3 34 34 H 1.09001 * 109.46953 * 149.99836 * 1 2 3 35 35 H 1.08004 * 126.65102 * 0.02562 * 3 2 1 36 36 H 1.09000 * 109.76036 * 224.41565 * 7 5 4 37 37 H 1.09010 * 109.68552 * 103.76321 * 7 5 4 38 38 H 1.08998 * 110.38023 * 100.80314 * 13 12 10 39 39 H 1.08999 * 110.50575 * 338.32182 * 13 12 10 40 40 H 1.08997 * 109.46922 * 172.12214 * 16 14 13 41 41 H 1.09000 * 109.46483 * 52.13033 * 16 14 13 42 42 H 0.96996 * 120.00499 * 359.97438 * 17 16 14 43 43 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.47436 * 60.00126 * 28 26 14 45 45 H 1.09002 * 109.47085 * 180.02562 * 28 26 14 46 46 H 1.09001 * 109.47293 * 300.00488 * 28 26 14 47 47 H 1.09001 * 110.41288 * 21.61747 * 29 12 10 48 48 H 1.09003 * 110.50794 * 259.23700 * 29 12 10 49 49 H 1.08998 * 109.47155 * 50.55284 * 30 8 7 50 50 H 1.09001 * 109.46161 * 170.54285 * 30 8 7 51 51 H 1.08999 * 109.58203 * 43.11872 * 31 4 3 52 52 H 1.08999 * 109.58043 * 282.71328 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6416 -0.0006 5 6 3.5414 -0.7119 -0.0017 6 7 2.2957 -1.0869 -0.0008 7 6 4.7655 -1.5971 -0.0067 8 6 5.9735 -0.7416 -0.4089 9 1 5.9041 -0.4882 -1.4667 10 6 7.2431 -1.5143 -0.1587 11 8 8.0754 -1.0805 0.6093 12 7 7.4533 -2.6872 -0.7884 13 6 8.6308 -3.5816 -0.6735 14 6 8.8770 -4.0848 -2.1121 15 1 9.6269 -3.4671 -2.6065 16 6 9.3225 -5.5484 -2.0947 17 7 10.6537 -5.6466 -1.4912 18 6 11.2609 -6.8678 -1.3671 19 1 10.7581 -7.7585 -1.7138 20 6 12.5224 -6.9608 -0.7958 21 7 13.1350 -5.8752 -0.3728 22 14 13.3504 -8.6267 -0.6259 23 1 14.6811 -8.4555 0.0105 24 1 12.5088 -9.5140 0.2164 25 1 13.5196 -9.2347 -1.9701 26 6 7.5149 -3.9471 -2.8235 27 1 7.1640 -4.9219 -3.1622 28 6 7.6276 -2.9831 -4.0062 29 6 6.5622 -3.3735 -1.7524 30 6 5.9836 0.5428 0.4252 31 6 4.8149 1.4382 -0.0003 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3633 -0.8900 -0.5139 35 1 1.9763 2.1222 0.0004 36 1 4.6323 -2.4061 -0.7250 37 1 4.9233 -2.0111 0.9893 38 1 8.4088 -4.4182 -0.0110 39 1 9.4969 -3.0280 -0.3110 40 1 9.3570 -5.9298 -3.1152 41 1 8.6145 -6.1367 -1.5108 42 1 11.1051 -4.8467 -1.1795 43 1 14.0165 -5.9403 0.0268 44 1 8.3624 -3.3631 -4.7160 45 1 6.6585 -2.8961 -4.4977 46 1 7.9420 -2.0030 -3.6475 47 1 5.8689 -2.6626 -2.2020 48 1 6.0148 -4.1778 -1.2607 49 1 5.8830 0.2911 1.4810 50 1 6.9232 1.0719 0.2659 51 1 4.7139 2.2655 0.7022 52 1 4.9983 1.8272 -1.0019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106317619.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:34 Heat of formation + Delta-G solvation = 29.038358 kcal Electronic energy + Delta-G solvation = -30823.953988 eV Core-core repulsion = 26824.085068 eV Total energy + Delta-G solvation = -3999.868920 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.65679 -40.35832 -38.30811 -36.52049 -34.71278 -33.74323 -32.63974 -31.82969 -31.40887 -29.62027 -28.81980 -27.60835 -26.58105 -25.57199 -24.37800 -23.51164 -22.65231 -21.27046 -20.68087 -19.80250 -19.52643 -19.15151 -17.39106 -17.16622 -16.86067 -16.27704 -15.94189 -15.43090 -15.08786 -14.62201 -14.55828 -14.42401 -14.23898 -14.03743 -13.82128 -13.48799 -13.38355 -13.24978 -13.12582 -12.94591 -12.78395 -12.59836 -12.43659 -12.27499 -11.99677 -11.93416 -11.73067 -11.59845 -11.49132 -11.28047 -11.15513 -10.84245 -10.60080 -10.53644 -10.33601 -10.18130 -10.02493 -9.83244 -9.78194 -9.66553 -8.88179 -8.68105 -8.45663 -6.93179 -5.75842 -3.05348 1.74696 2.44612 2.50357 2.81277 2.85314 3.44614 3.48930 3.50148 3.81256 4.05437 4.14013 4.18333 4.50411 4.56297 4.59833 4.61141 4.70254 4.75821 4.81794 4.87954 4.94531 5.00847 5.07804 5.20248 5.30891 5.35235 5.40414 5.45093 5.46619 5.49179 5.53539 5.57813 5.61782 5.67647 5.71323 5.76255 5.77380 5.96658 6.03426 6.04492 6.08824 6.15726 6.20154 6.38285 6.48061 6.52763 6.69928 6.82549 6.87690 7.54708 7.69444 7.86567 8.08071 8.42436 9.53598 10.10577 10.44749 11.46652 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020744 B = 0.002086 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.454032 B =13420.064986 C =13771.489258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.005 4.005 3 C -0.056 4.056 4 N -0.456 5.456 5 C 0.214 3.786 6 N -0.484 5.484 7 C -0.027 4.027 8 C -0.107 4.107 9 H 0.103 0.897 10 C 0.539 3.461 11 O -0.536 6.536 12 N -0.618 5.618 13 C 0.115 3.885 14 C -0.103 4.103 15 H 0.082 0.918 16 C 0.163 3.837 17 N -0.733 5.733 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.291 1.291 24 H -0.286 1.286 25 H -0.286 1.286 26 C -0.101 4.101 27 H 0.090 0.910 28 C -0.141 4.141 29 C 0.100 3.900 30 C -0.116 4.116 31 C 0.104 3.896 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.173 0.827 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.103 0.897 51 H 0.095 0.905 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.644 16.965 -3.325 29.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.188 4.188 4 N -0.139 5.139 5 C -0.048 4.048 6 N -0.203 5.203 7 C -0.066 4.066 8 C -0.129 4.129 9 H 0.121 0.879 10 C 0.327 3.673 11 O -0.413 6.413 12 N -0.351 5.351 13 C -0.006 4.006 14 C -0.123 4.123 15 H 0.100 0.900 16 C 0.035 3.965 17 N -0.377 5.377 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.213 1.213 25 H -0.213 1.213 26 C -0.121 4.121 27 H 0.109 0.891 28 C -0.199 4.199 29 C -0.023 4.023 30 C -0.154 4.154 31 C -0.018 4.018 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.190 0.810 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.218 0.782 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.102 0.898 50 H 0.121 0.879 51 H 0.113 0.887 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.316 16.436 -2.848 28.668 hybrid contribution 0.959 0.247 0.151 1.002 sum -22.356 16.683 -2.697 28.025 Atomic orbital electron populations 1.20000 0.87678 1.02526 1.02081 1.20811 0.96483 0.88290 1.07838 1.22298 0.82834 1.00382 1.13322 1.45388 1.06605 1.07438 1.54442 1.23066 0.94626 0.81541 1.05602 1.69956 0.99591 1.30415 1.20360 1.20254 0.86034 0.95608 1.04726 1.21374 0.93179 0.95870 1.02496 0.87925 1.19773 0.87607 0.79799 0.80128 1.90746 1.46483 1.67888 1.36138 1.49080 1.21866 1.20248 1.43925 1.22511 0.88127 0.92656 0.97333 1.22389 0.96104 0.99127 0.94641 0.89963 1.20724 0.88452 0.91003 0.96321 1.42365 1.15058 1.07400 1.72907 1.19159 0.98522 0.86207 1.33400 0.91229 1.24752 0.97540 0.97065 1.01572 1.69652 1.15348 1.26585 1.46442 0.86266 0.78700 0.83542 0.77650 1.21713 1.21257 1.21301 1.22124 0.95275 0.99881 0.94836 0.89124 1.21835 1.01557 0.99043 0.97428 1.22634 0.93032 0.96610 0.90018 1.21741 0.98163 0.94455 1.01057 1.22061 0.81886 0.94405 1.03451 0.91567 0.91495 0.91214 0.80957 0.87773 0.88659 0.90251 0.89673 0.95974 0.96063 0.78230 0.93432 0.91995 0.92793 0.92908 0.90416 0.90444 0.89791 0.87887 0.88687 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.42 36.01 0.38 -0.11 16 2 C -0.01 -0.05 7.10 -82.71 -0.59 -0.64 16 3 C -0.06 -0.48 11.55 -16.76 -0.19 -0.68 16 4 N -0.46 -4.09 3.13 -113.75 -0.36 -4.45 16 5 C 0.21 2.33 7.65 -155.23 -1.19 1.14 16 6 N -0.48 -6.13 11.24 -6.87 -0.08 -6.21 16 7 C -0.03 -0.26 5.23 -27.50 -0.14 -0.40 16 8 C -0.11 -0.97 1.87 -91.49 -0.17 -1.15 16 9 H 0.10 0.80 7.93 -51.93 -0.41 0.39 16 10 C 0.54 7.00 7.25 -10.98 -0.08 6.92 16 11 O -0.54 -9.11 16.10 5.56 0.09 -9.02 16 12 N -0.62 -7.84 3.31 -169.17 -0.56 -8.40 16 13 C 0.12 1.81 6.34 -2.31 -0.01 1.79 16 14 C -0.10 -1.54 2.76 -89.22 -0.25 -1.79 16 15 H 0.08 1.33 7.71 -51.92 -0.40 0.93 16 16 C 0.16 3.06 5.37 -4.04 -0.02 3.04 16 17 N -0.73 -18.08 5.46 -59.91 -0.33 -18.41 16 18 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 22 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C -0.10 -1.11 3.31 -89.22 -0.30 -1.41 16 27 H 0.09 0.94 7.71 -51.93 -0.40 0.54 16 28 C -0.14 -1.38 8.90 37.16 0.33 -1.05 16 29 C 0.10 0.98 4.97 -2.41 -0.01 0.97 16 30 C -0.12 -0.93 4.67 -26.52 -0.12 -1.06 16 31 C 0.10 0.64 6.98 -3.92 -0.03 0.62 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.17 0.94 8.06 -52.48 -0.42 0.51 16 36 H 0.10 0.89 5.76 -51.93 -0.30 0.60 16 37 H 0.10 0.96 8.11 -51.92 -0.42 0.54 16 38 H 0.08 1.33 7.78 -51.93 -0.40 0.92 16 39 H 0.08 1.55 7.89 -51.93 -0.41 1.14 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.40 8.02 -51.93 -0.42 -0.01 16 42 H 0.38 10.07 7.56 -40.82 -0.31 9.76 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.61 6.13 -51.93 -0.32 0.29 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 50 H 0.10 0.83 7.79 -51.93 -0.40 0.43 16 51 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 52 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 409.16 15.07 6.17 6.17 Total: -1.00 -34.95 409.16 -10.82 -45.77 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -8.81 Total: 5.78 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.64 Total: -1.10 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -0.60 Total: -64.99 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.95 -10.82 -45.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106317619.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.812 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds