Wall clock time and date at job start Wed Apr 1 2020 04:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34858 * 125.96432 * 2 1 4 4 N 1.36306 * 106.69158 * 180.02562 * 3 2 1 5 5 C 1.35423 * 107.39908 * 0.03641 * 4 3 2 6 6 N 1.30097 * 108.62827 * 359.94807 * 5 4 3 7 7 C 1.51062 * 124.00011 * 179.81657 * 5 4 3 8 8 C 1.53396 * 108.19157 * 344.11101 * 7 5 4 9 9 H 1.08999 * 109.50763 * 288.82290 * 8 7 5 10 10 C 1.50708 * 109.50946 * 168.72953 * 8 7 5 11 11 O 1.21275 * 119.99682 * 240.09701 * 10 8 7 12 12 N 1.34774 * 119.99885 * 60.09372 * 10 8 7 13 13 C 1.48318 * 127.76753 * 179.89077 * 12 10 8 14 14 C 1.54385 * 104.53517 * 219.52907 * 13 12 10 15 15 H 1.09008 * 110.33784 * 95.18696 * 14 13 12 16 16 C 1.53001 * 110.34322 * 217.33155 * 14 13 12 17 17 N 1.46496 * 109.47205 * 292.13172 * 16 14 13 18 18 C 1.36945 * 119.99718 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.54284 * 105.05736 * 336.26139 * 14 13 12 27 27 H 1.08999 * 110.34410 * 240.97122 * 26 14 13 28 28 C 1.52999 * 110.34316 * 118.81587 * 26 14 13 29 29 C 1.48139 * 127.83894 * 359.97438 * 12 10 8 30 30 C 1.53149 * 109.27500 * 48.77895 * 8 7 5 31 31 C 1.46473 * 127.77980 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.46796 * 269.99891 * 1 2 3 33 33 H 1.09000 * 109.47067 * 30.00041 * 1 2 3 34 34 H 1.09001 * 109.46953 * 149.99836 * 1 2 3 35 35 H 1.08004 * 126.65102 * 0.02562 * 3 2 1 36 36 H 1.09000 * 109.76036 * 224.41565 * 7 5 4 37 37 H 1.09010 * 109.68552 * 103.76321 * 7 5 4 38 38 H 1.08998 * 110.38023 * 100.80314 * 13 12 10 39 39 H 1.08999 * 110.50575 * 338.32182 * 13 12 10 40 40 H 1.08997 * 109.46922 * 172.12214 * 16 14 13 41 41 H 1.09000 * 109.46483 * 52.13033 * 16 14 13 42 42 H 0.96996 * 120.00499 * 359.97438 * 17 16 14 43 43 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.47436 * 60.00126 * 28 26 14 45 45 H 1.09002 * 109.47085 * 180.02562 * 28 26 14 46 46 H 1.09001 * 109.47293 * 300.00488 * 28 26 14 47 47 H 1.09001 * 110.41288 * 21.61747 * 29 12 10 48 48 H 1.09003 * 110.50794 * 259.23700 * 29 12 10 49 49 H 1.08998 * 109.47155 * 50.55284 * 30 8 7 50 50 H 1.09001 * 109.46161 * 170.54285 * 30 8 7 51 51 H 1.08999 * 109.58203 * 43.11872 * 31 4 3 52 52 H 1.08999 * 109.58043 * 282.71328 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6416 -0.0006 5 6 3.5414 -0.7119 -0.0017 6 7 2.2957 -1.0869 -0.0008 7 6 4.7655 -1.5971 -0.0067 8 6 5.9735 -0.7416 -0.4089 9 1 5.9041 -0.4882 -1.4667 10 6 7.2431 -1.5143 -0.1587 11 8 8.0754 -1.0805 0.6093 12 7 7.4533 -2.6872 -0.7884 13 6 8.6308 -3.5816 -0.6735 14 6 8.8770 -4.0848 -2.1121 15 1 9.6269 -3.4671 -2.6065 16 6 9.3225 -5.5484 -2.0947 17 7 10.6537 -5.6466 -1.4912 18 6 11.2609 -6.8678 -1.3671 19 1 10.7581 -7.7585 -1.7138 20 6 12.5224 -6.9608 -0.7958 21 7 13.1350 -5.8752 -0.3728 22 14 13.3504 -8.6267 -0.6259 23 1 14.6811 -8.4555 0.0105 24 1 12.5088 -9.5140 0.2164 25 1 13.5196 -9.2347 -1.9701 26 6 7.5149 -3.9471 -2.8235 27 1 7.1640 -4.9219 -3.1622 28 6 7.6276 -2.9831 -4.0062 29 6 6.5622 -3.3735 -1.7524 30 6 5.9836 0.5428 0.4252 31 6 4.8149 1.4382 -0.0003 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3633 -0.8900 -0.5139 35 1 1.9763 2.1222 0.0004 36 1 4.6323 -2.4061 -0.7250 37 1 4.9233 -2.0111 0.9893 38 1 8.4088 -4.4182 -0.0110 39 1 9.4969 -3.0280 -0.3110 40 1 9.3570 -5.9298 -3.1152 41 1 8.6145 -6.1367 -1.5108 42 1 11.1051 -4.8467 -1.1795 43 1 14.0165 -5.9403 0.0268 44 1 8.3624 -3.3631 -4.7160 45 1 6.6585 -2.8961 -4.4977 46 1 7.9420 -2.0030 -3.6475 47 1 5.8689 -2.6626 -2.2020 48 1 6.0148 -4.1778 -1.2607 49 1 5.8830 0.2911 1.4810 50 1 6.9232 1.0719 0.2659 51 1 4.7139 2.2655 0.7022 52 1 4.9983 1.8272 -1.0019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106317619.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:33 Heat of formation + Delta-G solvation = 7.400351 kcal Electronic energy + Delta-G solvation = -30824.892283 eV Core-core repulsion = 26824.085068 eV Total energy + Delta-G solvation = -4000.807215 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.33987 -41.40319 -39.39866 -37.32458 -36.45386 -34.63519 -33.83494 -33.00321 -32.45042 -30.83334 -29.83507 -28.38627 -27.44058 -27.00419 -25.33920 -24.83187 -23.64726 -22.54354 -21.39301 -20.98212 -20.30800 -20.06255 -19.05429 -18.20272 -17.74299 -17.19166 -16.97121 -16.53676 -16.36181 -15.87115 -15.67269 -15.33078 -15.14507 -15.01154 -14.91430 -14.65026 -14.64736 -14.27081 -14.12328 -13.84198 -13.73651 -13.47619 -13.36631 -13.11630 -13.08403 -12.87258 -12.74668 -12.67709 -12.59527 -12.47550 -12.29279 -12.21521 -12.12698 -11.96278 -11.71385 -11.55552 -11.40353 -10.98577 -10.92001 -10.85901 -10.46564 -9.79261 -9.11959 -8.99398 -7.94316 -5.23471 1.08642 1.46972 1.47261 1.50225 1.56262 1.80424 1.87757 2.08720 2.56238 3.04200 3.34283 3.39297 3.45867 3.52105 3.55890 3.65532 3.83711 3.93748 4.00930 4.09035 4.20173 4.22785 4.25674 4.35208 4.37320 4.45160 4.50576 4.52798 4.55502 4.59994 4.63189 4.74340 4.78988 4.83571 4.86060 4.92059 4.93414 5.01204 5.04683 5.07002 5.08229 5.19090 5.24188 5.30182 5.31015 5.39231 5.49877 5.54400 5.89891 6.23395 6.27271 6.52322 7.02786 7.16465 7.33434 8.10120 8.31588 9.28993 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020744 B = 0.002086 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.454032 B =13420.064986 C =13771.489258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.037 4.037 3 C -0.045 4.045 4 N -0.455 5.455 5 C 0.196 3.804 6 N -0.522 5.522 7 C -0.020 4.020 8 C -0.092 4.092 9 H 0.127 0.873 10 C 0.535 3.465 11 O -0.584 6.584 12 N -0.615 5.615 13 C 0.120 3.880 14 C -0.092 4.092 15 H 0.067 0.933 16 C 0.162 3.838 17 N -0.747 5.747 18 C -0.243 4.243 19 H 0.079 0.921 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.974 3.026 23 H -0.298 1.298 24 H -0.278 1.278 25 H -0.276 1.276 26 C -0.093 4.093 27 H 0.105 0.895 28 C -0.137 4.137 29 C 0.100 3.900 30 C -0.114 4.114 31 C 0.108 3.892 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.207 0.793 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.030 0.970 41 H 0.028 0.972 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.046 0.954 47 H 0.109 0.891 48 H 0.090 0.910 49 H 0.066 0.934 50 H 0.102 0.898 51 H 0.117 0.883 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.261 17.867 -5.011 32.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.166 4.166 3 C -0.178 4.178 4 N -0.138 5.138 5 C -0.067 4.067 6 N -0.242 5.242 7 C -0.059 4.059 8 C -0.113 4.113 9 H 0.145 0.855 10 C 0.325 3.675 11 O -0.464 6.464 12 N -0.348 5.348 13 C -0.003 4.003 14 C -0.112 4.112 15 H 0.085 0.915 16 C 0.036 3.964 17 N -0.390 5.390 18 C -0.375 4.375 19 H 0.097 0.903 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.803 3.197 23 H -0.225 1.225 24 H -0.204 1.204 25 H -0.202 1.202 26 C -0.113 4.113 27 H 0.123 0.877 28 C -0.195 4.195 29 C -0.021 4.021 30 C -0.152 4.152 31 C -0.013 4.013 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.224 0.776 36 H 0.132 0.868 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.065 0.935 47 H 0.127 0.873 48 H 0.108 0.892 49 H 0.085 0.915 50 H 0.120 0.880 51 H 0.135 0.865 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.995 17.320 -4.579 31.570 hybrid contribution 1.712 -0.016 0.684 1.844 sum -24.283 17.304 -3.895 30.071 Atomic orbital electron populations 1.20045 0.86225 1.03208 1.02459 1.21364 0.97805 0.88466 1.08950 1.22841 0.82291 1.01483 1.11202 1.45580 1.07565 1.07053 1.53574 1.23119 0.94406 0.82567 1.06559 1.69894 1.00710 1.32124 1.21484 1.20175 0.85739 0.95752 1.04261 1.21318 0.90453 0.95514 1.04053 0.85497 1.20540 0.88345 0.79565 0.79037 1.90723 1.48422 1.69041 1.38194 1.49131 1.21262 1.20014 1.44346 1.22198 0.88283 0.92353 0.97515 1.22210 0.98255 0.96151 0.94557 0.91454 1.20905 0.85858 0.93740 0.95906 1.42620 1.17044 1.06117 1.73218 1.19617 0.98568 0.87495 1.31816 0.90322 1.25607 0.98621 1.00561 1.02348 1.69828 1.15460 1.28752 1.48166 0.85197 0.77152 0.79449 0.77882 1.22455 1.20362 1.20196 1.22129 0.92510 1.01339 0.95298 0.87659 1.21812 1.02945 0.98085 0.96626 1.22866 0.92645 0.97540 0.89060 1.21702 0.99245 0.94357 0.99938 1.22230 0.79788 0.93862 1.05433 0.91305 0.89149 0.92188 0.77590 0.86824 0.90077 0.91698 0.93302 0.95257 0.95413 0.79699 0.94137 0.92779 0.89927 0.93499 0.87274 0.89157 0.91531 0.87966 0.86479 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.42 71.24 0.74 -0.07 16 2 C -0.04 -0.72 7.10 41.41 0.29 -0.42 16 3 C -0.04 -0.64 11.55 83.22 0.96 0.32 16 4 N -0.46 -6.95 3.13 -513.78 -1.61 -8.56 16 5 C 0.20 3.95 7.65 138.24 1.06 5.01 16 6 N -0.52 -12.66 11.24 -175.66 -1.98 -14.63 16 7 C -0.02 -0.35 5.23 30.10 0.16 -0.20 16 8 C -0.09 -1.52 1.87 -11.35 -0.02 -1.54 16 9 H 0.13 1.54 7.93 -2.39 -0.02 1.52 16 10 C 0.54 13.89 7.25 87.66 0.64 14.52 16 11 O -0.58 -20.71 16.10 -3.02 -0.05 -20.76 16 12 N -0.62 -15.44 3.31 -807.51 -2.67 -18.11 16 13 C 0.12 3.92 6.34 86.50 0.55 4.47 16 14 C -0.09 -2.76 2.76 -9.89 -0.03 -2.79 16 15 H 0.07 2.24 7.71 -2.38 -0.02 2.22 16 16 C 0.16 6.09 5.37 86.38 0.46 6.56 16 17 N -0.75 -37.80 5.46 -343.47 -1.87 -39.67 16 18 C -0.24 -13.57 9.99 84.03 0.84 -12.73 16 19 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 20 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 21 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 22 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 23 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 C -0.09 -1.84 3.31 -9.88 -0.03 -1.87 16 27 H 0.11 1.85 7.71 -2.39 -0.02 1.83 16 28 C -0.14 -2.30 8.90 71.98 0.64 -1.66 16 29 C 0.10 1.73 4.97 86.54 0.43 2.16 16 30 C -0.11 -1.68 4.67 30.73 0.14 -1.54 16 31 C 0.11 0.99 6.98 86.47 0.60 1.59 16 32 H 0.07 0.83 8.14 -2.38 -0.02 0.82 16 33 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.21 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.11 1.70 5.76 -2.39 -0.01 1.69 16 37 H 0.08 1.63 8.11 -2.38 -0.02 1.61 16 38 H 0.06 2.29 7.78 -2.39 -0.02 2.27 16 39 H 0.05 1.94 7.89 -2.39 -0.02 1.92 16 40 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.03 1.03 8.02 -2.39 -0.02 1.01 16 42 H 0.37 20.41 7.56 -92.71 -0.70 19.71 16 43 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.11 1.26 6.13 -2.39 -0.01 1.25 16 48 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 50 H 0.10 1.55 7.79 -2.39 -0.02 1.53 16 51 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -79.49 409.16 2.24 -77.24 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.21 Total: 28.65 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 7.90 Total: 7.65 kcal Atomic # 7 Polarization: -133.57 SS G_CDS: -7.85 Total: -141.42 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.05 Total: -20.76 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -79.49 2.24 -77.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106317619.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.643 kcal (2) G-P(sol) polarization free energy of solvation -79.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds