Wall clock time and date at job start Wed Apr 1 2020 03:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30840 * 125.89474 * 2 1 4 4 N 1.40084 * 108.19905 * 180.26077 * 3 2 1 5 5 H 0.97005 * 126.03947 * 179.73445 * 4 3 2 6 6 C 1.34950 * 107.92650 * 359.72129 * 4 3 2 7 7 C 1.50700 * 126.12373 * 180.02562 * 6 4 3 8 8 C 1.35309 * 107.74438 * 359.97438 * 6 4 3 9 9 C 1.50701 * 126.03613 * 180.02562 * 8 6 4 10 10 C 1.50703 * 109.47355 * 90.00097 * 9 8 6 11 11 O 1.21283 * 119.99488 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 9 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 C 1.53516 * 111.15702 * 299.11041 * 14 13 12 16 16 C 1.54188 * 106.59164 * 240.87823 * 15 14 13 17 17 C 1.54744 * 104.34687 * 335.43383 * 16 15 14 18 18 C 1.54673 * 111.23045 * 180.02562 * 14 13 12 19 19 H 1.08997 * 112.40062 * 19.48475 * 18 14 13 20 20 N 1.47257 * 106.09788 * 256.40336 * 18 14 13 21 21 C 1.36938 * 126.51538 * 150.10610 * 20 18 14 22 22 H 1.07999 * 120.00487 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99866 * 179.97438 * 21 20 18 24 24 N 1.31623 * 120.00140 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00210 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46921 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47505 * 119.99826 * 25 23 21 28 28 H 1.48501 * 109.47250 * 240.00439 * 25 23 21 29 29 C 1.47154 * 106.96402 * 330.07449 * 20 18 14 30 30 C 1.53673 * 111.17760 * 62.59730 * 14 13 12 31 31 H 1.09001 * 109.46759 * 270.20499 * 1 2 3 32 32 H 1.08996 * 109.47191 * 30.21039 * 1 2 3 33 33 H 1.09000 * 109.46872 * 150.20921 * 1 2 3 34 34 H 1.09003 * 109.47488 * 269.97144 * 7 6 4 35 35 H 1.09005 * 109.47636 * 29.97670 * 7 6 4 36 36 H 1.08998 * 109.46864 * 149.97409 * 7 6 4 37 37 H 1.08998 * 109.47477 * 329.99943 * 9 8 6 38 38 H 1.09002 * 109.47412 * 210.00202 * 9 8 6 39 39 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 40 40 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 41 41 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 42 42 H 1.09002 * 110.03908 * 0.98826 * 15 14 13 43 43 H 1.08998 * 110.04317 * 122.43785 * 15 14 13 44 44 H 1.08992 * 110.80154 * 216.50279 * 16 15 14 45 45 H 1.08994 * 110.10844 * 94.01599 * 16 15 14 46 46 H 1.08995 * 110.64794 * 278.62522 * 17 16 15 47 47 H 1.08991 * 110.65128 * 155.53320 * 17 16 15 48 48 H 0.97002 * 120.00241 * 179.97438 * 24 23 21 49 49 H 1.08994 * 110.09383 * 150.06626 * 29 20 18 50 50 H 1.08998 * 110.09077 * 271.59579 * 29 20 18 51 51 H 1.09000 * 110.23522 * 241.06700 * 30 14 13 52 52 H 1.09003 * 110.22613 * 3.01913 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0061 5 1 4.3909 1.2079 -0.0110 6 6 3.6142 -0.7154 -0.0034 7 6 4.8350 -1.5989 -0.0075 8 6 2.3272 -1.1329 0.0046 9 6 1.8600 -2.5657 0.0106 10 6 1.7120 -3.0399 1.4334 11 8 1.9618 -2.2885 2.3520 12 7 1.3031 -4.2993 1.6849 13 6 1.1534 -4.7583 3.0681 14 6 0.6744 -6.2113 3.0742 15 6 -0.6887 -6.3483 2.3813 16 6 -1.6677 -6.8946 3.4398 17 6 -0.7621 -7.6302 4.4564 18 6 0.5018 -6.7381 4.5182 19 1 0.4141 -5.9321 5.2467 20 7 1.6649 -7.6026 4.7792 21 6 2.2587 -7.8252 5.9929 22 1 1.8736 -7.3427 6.8791 23 6 3.3549 -8.6719 6.0845 24 7 3.8233 -9.2611 5.0047 25 14 4.1644 -8.9762 7.7402 26 1 3.4529 -8.2019 8.7888 27 1 4.1002 -10.4240 8.0640 28 1 5.5840 -8.5439 7.6840 29 6 2.0674 -8.1823 3.4880 30 6 1.7072 -7.1391 2.4155 31 1 -0.3633 0.0037 1.0277 32 1 -0.3633 0.8881 -0.5171 33 1 -0.3633 -0.8919 -0.5106 34 1 5.1243 -1.8143 -1.0361 35 1 5.6538 -1.0898 0.5012 36 1 4.6101 -2.5316 0.5097 37 1 2.5906 -3.1883 -0.5057 38 1 0.8984 -2.6365 -0.4978 39 1 1.1036 -4.9003 0.9501 40 1 2.1136 -4.6901 3.5794 41 1 0.4232 -4.1329 3.5815 42 1 -1.0203 -5.3770 2.0141 43 1 -0.6185 -7.0562 1.5555 44 1 -2.3774 -7.5882 2.9892 45 1 -2.1941 -6.0718 3.9234 46 1 -0.5115 -8.6279 4.0961 47 1 -1.2437 -7.6825 5.4327 48 1 4.5895 -9.8525 5.0686 49 1 3.1408 -8.3716 3.4808 50 1 1.5229 -9.1091 3.3076 51 1 1.2726 -7.6287 1.5440 52 1 2.5931 -6.5729 2.1277 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107631473.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:23 Heat of formation + Delta-G solvation = 22.560057 kcal Electronic energy + Delta-G solvation = -31356.259746 eV Core-core repulsion = 27356.109905 eV Total energy + Delta-G solvation = -4000.149840 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.34454 -41.23637 -39.96665 -36.23930 -35.24372 -34.36630 -33.90644 -33.30439 -31.93479 -30.36971 -29.27896 -28.46813 -28.41946 -27.04878 -25.62279 -25.07124 -22.16211 -21.94728 -21.14173 -20.93052 -20.30342 -19.59162 -18.91907 -18.25246 -17.90786 -16.94921 -16.61841 -16.35899 -16.09229 -15.83891 -15.45196 -15.22694 -15.00966 -14.82155 -14.43551 -14.34533 -14.12715 -14.09720 -14.05243 -13.84704 -13.55060 -13.34033 -13.21936 -13.14275 -12.87149 -12.84311 -12.77790 -12.54413 -12.43601 -12.12121 -11.95856 -11.79485 -11.57047 -11.53001 -11.44718 -11.38828 -11.29081 -11.00196 -10.79853 -10.67369 -10.16760 -9.93024 -9.30267 -8.83181 -7.71260 -5.17283 0.92582 1.45290 1.46005 1.55645 1.66929 1.84321 2.00530 2.47984 2.52577 3.32789 3.58996 3.74737 3.77114 3.79245 3.80431 4.00297 4.11079 4.18906 4.32121 4.39017 4.43917 4.47794 4.53616 4.60423 4.62740 4.68532 4.70647 4.71843 4.74240 4.87071 4.88905 4.95945 5.00393 5.02138 5.10961 5.11326 5.12734 5.21479 5.23371 5.27225 5.31363 5.46446 5.52114 5.53738 5.61349 5.64066 5.74836 5.77583 5.93117 6.43538 6.45634 6.75943 6.77796 7.16278 7.47262 7.84478 8.50527 9.26397 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013026 B = 0.002720 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.014520 B =10291.386617 C =11577.232327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.079 3.921 3 N -0.337 5.337 4 N -0.477 5.477 5 H 0.446 0.554 6 C 0.099 3.901 7 C -0.093 4.093 8 C -0.239 4.239 9 C -0.052 4.052 10 C 0.508 3.492 11 O -0.587 6.587 12 N -0.711 5.711 13 C 0.157 3.843 14 C -0.071 4.071 15 C -0.101 4.101 16 C -0.112 4.112 17 C -0.132 4.132 18 C 0.152 3.848 19 H 0.052 0.948 20 N -0.610 5.610 21 C -0.227 4.227 22 H 0.075 0.925 23 C -0.067 4.067 24 N -0.945 5.945 25 Si 0.972 3.028 26 H -0.271 1.271 27 H -0.292 1.292 28 H -0.293 1.293 29 C 0.139 3.861 30 C -0.114 4.114 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.416 0.584 40 H 0.028 0.972 41 H 0.057 0.943 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.045 0.955 47 H 0.047 0.953 48 H 0.245 0.755 49 H 0.082 0.918 50 H -0.017 1.017 51 H 0.087 0.913 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.738 13.029 -17.720 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 N -0.161 5.161 4 N -0.186 5.186 5 H 0.292 0.708 6 C -0.030 4.030 7 C -0.152 4.152 8 C -0.250 4.250 9 C -0.092 4.092 10 C 0.296 3.704 11 O -0.467 6.467 12 N -0.363 5.363 13 C 0.032 3.968 14 C -0.073 4.073 15 C -0.139 4.139 16 C -0.150 4.150 17 C -0.172 4.172 18 C 0.044 3.956 19 H 0.070 0.930 20 N -0.332 5.332 21 C -0.356 4.356 22 H 0.093 0.907 23 C -0.259 4.259 24 N -0.595 5.595 25 Si 0.802 3.198 26 H -0.196 1.196 27 H -0.220 1.220 28 H -0.221 1.221 29 C 0.013 3.987 30 C -0.153 4.153 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.253 0.747 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.055 0.945 49 H 0.100 0.900 50 H 0.001 0.999 51 H 0.106 0.894 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.349 14.716 -16.936 23.317 hybrid contribution 1.244 -1.245 1.348 2.217 sum -5.105 13.470 -15.588 21.225 Atomic orbital electron populations 1.20294 0.85282 1.04643 1.03060 1.22668 0.98150 0.90290 0.97657 1.77172 0.87545 1.23463 1.27924 1.46121 1.07151 1.05198 1.60101 0.70801 1.21344 0.97862 0.85132 0.98686 1.20575 0.92022 0.97714 1.04843 1.19350 0.91616 0.95627 1.18446 1.19972 1.05829 0.91563 0.91832 1.21375 0.75442 0.81001 0.92570 1.90699 1.51422 1.56001 1.48590 1.45889 1.68447 1.13515 1.08499 1.20944 0.99044 0.93435 0.83353 1.21842 0.96664 0.92643 0.96121 1.22189 0.91664 1.02192 0.97846 1.22229 0.97101 0.99590 0.96105 1.22865 0.96559 0.98954 0.98785 1.21993 0.87483 0.91910 0.94177 0.93015 1.44802 1.32409 1.51833 1.04110 1.19440 1.08389 1.21697 0.86071 0.90743 1.25496 0.99768 1.00186 1.00499 1.69907 1.27194 1.35195 1.27252 0.85083 0.77936 0.77108 0.79698 1.19553 1.21951 1.22056 1.21644 1.01469 0.92069 0.83481 1.22547 0.97775 0.96825 0.98123 0.91240 0.90245 0.88027 0.87405 0.90068 0.90395 0.85846 0.85155 0.74721 0.95385 0.92452 0.89592 0.90016 0.90405 0.91165 0.93600 0.93392 0.94489 0.89984 0.99891 0.89415 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 10.26 71.24 0.73 -0.54 16 2 C 0.08 1.87 7.22 43.10 0.31 2.18 16 3 N -0.34 -8.86 12.70 -47.38 -0.60 -9.46 16 4 N -0.48 -10.11 7.36 -48.01 -0.35 -10.46 16 5 H 0.45 6.62 8.96 -213.32 -1.91 4.71 16 6 C 0.10 2.04 7.21 41.40 0.30 2.34 16 7 C -0.09 -1.32 10.04 71.24 0.72 -0.60 16 8 C -0.24 -5.21 4.59 -20.15 -0.09 -5.30 16 9 C -0.05 -0.83 5.61 29.10 0.16 -0.67 16 10 C 0.51 12.62 7.82 87.66 0.69 13.31 16 11 O -0.59 -21.18 16.03 -3.04 -0.05 -21.23 16 12 N -0.71 -15.87 4.84 -463.07 -2.24 -18.11 16 13 C 0.16 4.78 4.27 86.38 0.37 5.15 16 14 C -0.07 -2.14 0.65 -51.21 -0.03 -2.18 16 15 C -0.10 -2.21 5.62 31.17 0.18 -2.03 16 16 C -0.11 -2.69 6.83 31.59 0.22 -2.48 16 17 C -0.13 -4.54 6.37 31.81 0.20 -4.34 16 18 C 0.15 5.99 3.59 46.04 0.17 6.16 16 19 H 0.05 2.13 7.95 -2.39 -0.02 2.11 16 20 N -0.61 -30.58 2.98 -666.33 -1.99 -32.57 16 21 C -0.23 -12.72 10.33 84.03 0.87 -11.85 16 22 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 23 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 24 N -0.94 -55.95 10.06 21.65 0.22 -55.74 16 25 Si 0.97 46.39 29.55 68.60 2.03 48.41 16 26 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 27 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 29 C 0.14 6.58 5.68 86.55 0.49 7.07 16 30 C -0.11 -3.83 5.82 31.12 0.18 -3.65 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.10 1.15 7.25 -2.39 -0.02 1.13 16 34 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.08 1.29 7.77 -2.39 -0.02 1.27 16 37 H 0.12 1.35 7.77 -2.39 -0.02 1.33 16 38 H 0.13 1.26 7.25 -2.39 -0.02 1.25 16 39 H 0.42 6.43 7.86 -92.71 -0.73 5.70 16 40 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.09 1.50 7.47 -2.39 -0.02 1.48 16 43 H 0.08 1.54 7.10 -2.39 -0.02 1.53 16 44 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.05 1.79 7.28 -2.39 -0.02 1.78 16 47 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 49 H 0.08 4.56 5.46 -2.39 -0.01 4.55 16 50 H -0.02 -0.85 7.71 -2.39 -0.02 -0.87 16 51 H 0.09 2.36 7.11 -2.39 -0.02 2.35 16 52 H 0.05 1.85 7.62 -2.39 -0.02 1.83 16 Total: -1.00 -79.78 406.22 1.23 -78.55 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -1.70 Total: 21.41 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 5.91 Total: -0.80 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -4.97 Total: -126.34 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -79.78 1.23 -78.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107631473.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.111 kcal (2) G-P(sol) polarization free energy of solvation -79.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds