Wall clock time and date at job start Wed Apr 1 2020 03:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30836 * 125.90051 * 2 1 4 4 N 1.40082 * 108.20605 * 180.02562 * 3 2 1 5 5 H 0.96997 * 126.03771 * 179.97438 * 4 3 2 6 6 C 1.34946 * 107.92721 * 359.97438 * 4 3 2 7 7 C 1.50706 * 126.12715 * 180.02562 * 6 4 3 8 8 C 1.35318 * 107.74576 * 0.02562 * 6 4 3 9 9 C 1.50696 * 126.04030 * 180.02562 * 8 6 4 10 10 H 1.09010 * 109.47373 * 353.76548 * 9 8 6 11 11 C 1.52996 * 109.47222 * 233.76962 * 9 8 6 12 12 C 1.53002 * 109.47307 * 113.76694 * 9 8 6 13 13 C 1.50700 * 109.46952 * 186.65186 * 12 9 8 14 14 O 1.21282 * 120.00407 * 359.97438 * 13 12 9 15 15 N 1.34780 * 119.99774 * 180.02562 * 13 12 9 16 16 C 1.46501 * 119.99881 * 179.97438 * 15 13 12 17 17 H 1.08999 * 110.56113 * 34.11909 * 16 15 13 18 18 C 1.54857 * 110.62448 * 157.18795 * 16 15 13 19 19 C 1.55843 * 103.44423 * 118.49324 * 18 16 15 20 20 H 1.08994 * 115.56106 * 159.56609 * 19 18 16 21 21 C 1.55852 * 105.06538 * 288.17869 * 19 18 16 22 22 C 1.54848 * 103.44584 * 71.82155 * 21 19 18 23 23 C 1.55841 * 110.63055 * 271.21603 * 16 15 13 24 24 H 1.08998 * 115.55920 * 81.94530 * 23 16 15 25 25 N 1.50236 * 101.05028 * 32.93767 * 19 18 16 26 26 C 1.36937 * 130.83783 * 126.05564 * 25 19 18 27 27 H 1.08004 * 120.00260 * 179.97438 * 26 25 19 28 28 C 1.38815 * 119.99979 * 359.97060 * 26 25 19 29 29 N 1.31619 * 119.99885 * 0.02562 * 28 26 25 30 30 Si 1.86797 * 119.99977 * 180.02562 * 28 26 25 31 31 H 1.48496 * 109.47318 * 59.99505 * 30 28 26 32 32 H 1.48495 * 109.47292 * 180.02562 * 30 28 26 33 33 H 1.48509 * 109.47219 * 299.99854 * 30 28 26 34 34 H 1.08994 * 109.47287 * 95.27353 * 1 2 3 35 35 H 1.09005 * 109.47183 * 215.27704 * 1 2 3 36 36 H 1.08999 * 109.47353 * 335.27454 * 1 2 3 37 37 H 1.08992 * 109.47335 * 89.97898 * 7 6 4 38 38 H 1.09007 * 109.46478 * 209.97218 * 7 6 4 39 39 H 1.08992 * 109.47117 * 329.97030 * 7 6 4 40 40 H 1.08999 * 109.47633 * 59.99704 * 11 9 8 41 41 H 1.08998 * 109.47590 * 180.02562 * 11 9 8 42 42 H 1.09006 * 109.47318 * 299.99901 * 11 9 8 43 43 H 1.08993 * 109.47097 * 306.64808 * 12 9 8 44 44 H 1.08998 * 109.46966 * 66.65101 * 12 9 8 45 45 H 0.96997 * 119.99831 * 0.02562 * 15 13 12 46 46 H 1.08999 * 110.62984 * 236.98106 * 18 16 15 47 47 H 1.09006 * 110.62393 * 0.02562 * 18 16 15 48 48 H 1.09005 * 110.61944 * 313.33630 * 21 19 18 49 49 H 1.08992 * 110.76453 * 190.38102 * 21 19 18 50 50 H 1.09006 * 110.62608 * 241.51264 * 22 21 19 51 51 H 1.09001 * 110.76174 * 118.55819 * 22 21 19 52 52 H 0.97000 * 119.99897 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3908 1.2078 -0.0011 6 6 3.6142 -0.7154 -0.0004 7 6 4.8351 -1.5990 -0.0003 8 6 2.3271 -1.1331 -0.0002 9 6 1.8599 -2.5658 0.0006 10 1 2.7185 -3.2281 -0.1106 11 6 0.8913 -2.7870 -1.1629 12 6 1.1489 -2.8697 1.3208 13 6 0.8265 -4.3401 1.3908 14 8 1.1345 -5.0728 0.4748 15 7 0.1948 -4.8408 2.4711 16 6 -0.1191 -6.2702 2.5389 17 1 0.6570 -6.8563 2.0469 18 6 -0.2974 -6.7203 4.0098 19 6 -1.7733 -7.2181 4.0600 20 1 -2.0154 -7.8896 4.8838 21 6 -2.6400 -5.9260 3.9687 22 6 -2.4616 -5.4760 2.4979 23 6 -1.5115 -6.5574 1.9007 24 1 -1.5219 -6.6443 0.8142 25 7 -1.9373 -7.7733 2.6737 26 6 -2.3486 -9.0074 2.2461 27 1 -2.4033 -9.2223 1.1891 28 6 -2.6953 -9.9825 3.1713 29 7 -2.6291 -9.7206 4.4595 30 14 -3.2558 -11.6663 2.5882 31 1 -2.1756 -12.2981 1.7887 32 1 -3.5661 -12.5192 3.7634 33 1 -4.4720 -11.5198 1.7485 34 1 -0.3633 -0.0944 -1.0232 35 1 -0.3634 -0.8390 0.5935 36 1 -0.3634 0.9334 0.4298 37 1 5.1297 -1.8115 1.0273 38 1 4.6073 -2.5333 -0.5136 39 1 5.6509 -1.0914 -0.5147 40 1 1.3977 -2.5705 -2.1036 41 1 0.5530 -3.8231 -1.1622 42 1 0.0326 -2.1248 -1.0519 43 1 1.7983 -2.6001 2.1536 44 1 0.2262 -2.2922 1.3779 45 1 -0.0525 -4.2546 3.2032 46 1 0.3898 -7.5317 4.2492 47 1 -0.1527 -5.8798 4.6888 48 1 -2.2655 -5.1635 4.6517 49 1 -3.6865 -6.1471 4.1784 50 1 -1.9987 -4.4902 2.4514 51 1 -3.4183 -5.4746 1.9755 52 1 -2.8717 -10.4018 5.1060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109462191.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:41 Heat of formation + Delta-G solvation = 69.020028 kcal Electronic energy + Delta-G solvation = -31385.947364 eV Core-core repulsion = 27387.812179 eV Total energy + Delta-G solvation = -3998.135185 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.67686 -39.99464 -38.48119 -35.38241 -33.83911 -33.55670 -32.30479 -30.82738 -29.39633 -29.04596 -28.41576 -28.21397 -26.98291 -26.80686 -24.16242 -22.67278 -21.27203 -20.40588 -20.31270 -19.46257 -19.26544 -18.49300 -17.20441 -17.16590 -16.63370 -15.63567 -15.40764 -15.16191 -14.85027 -14.50224 -14.40777 -13.94386 -13.91759 -13.65848 -13.41850 -13.32489 -13.08735 -12.78413 -12.74959 -12.38885 -12.31218 -12.17685 -12.06356 -11.72384 -11.47758 -11.39302 -11.18696 -11.03543 -10.97875 -10.88956 -10.85565 -10.79876 -10.36677 -10.19125 -10.09184 -9.82844 -9.48510 -9.45043 -9.29167 -9.19380 -8.90926 -8.54527 -8.42962 -6.89010 -5.70877 -3.08528 1.62624 2.49373 2.61736 2.96870 3.41755 3.45780 3.46632 3.58302 4.38223 4.44158 4.48895 4.70669 4.83880 4.98572 5.06284 5.08193 5.16265 5.23497 5.34836 5.39490 5.40881 5.45356 5.51386 5.55223 5.63071 5.67969 5.77257 5.82895 5.84908 5.87870 5.96941 5.99933 6.09669 6.13727 6.15164 6.29835 6.34177 6.36438 6.41243 6.56165 6.58180 6.63318 6.75158 6.85414 6.99818 7.03647 7.05622 7.30522 7.49078 7.54674 7.78069 7.92783 8.17795 8.61102 9.12490 9.75022 10.55838 11.38899 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.002279 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.922805 B =12281.819023 C =12507.506553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.089 3.911 3 N -0.299 5.299 4 N -0.480 5.480 5 H 0.436 0.564 6 C 0.089 3.911 7 C -0.096 4.096 8 C -0.224 4.224 9 C 0.007 3.993 10 H 0.082 0.918 11 C -0.152 4.152 12 C -0.135 4.135 13 C 0.508 3.492 14 O -0.541 6.541 15 N -0.714 5.714 16 C 0.128 3.872 17 H 0.082 0.918 18 C -0.142 4.142 19 C 0.156 3.844 20 H 0.152 0.848 21 C -0.137 4.137 22 C -0.130 4.130 23 C 0.129 3.871 24 H 0.084 0.916 25 N -0.589 5.589 26 C -0.210 4.210 27 H 0.078 0.922 28 C -0.012 4.012 29 N -0.924 5.924 30 Si 0.916 3.084 31 H -0.286 1.286 32 H -0.290 1.290 33 H -0.286 1.286 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.394 0.606 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.044 0.956 49 H 0.054 0.946 50 H 0.051 0.949 51 H 0.050 0.950 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.390 20.271 -4.700 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 N -0.123 5.123 4 N -0.188 5.188 5 H 0.279 0.721 6 C -0.039 4.039 7 C -0.154 4.154 8 C -0.235 4.235 9 C -0.013 4.013 10 H 0.101 0.899 11 C -0.209 4.209 12 C -0.175 4.175 13 C 0.294 3.706 14 O -0.419 6.419 15 N -0.365 5.365 16 C 0.022 3.978 17 H 0.100 0.900 18 C -0.181 4.181 19 C 0.050 3.950 20 H 0.169 0.831 21 C -0.177 4.177 22 C -0.170 4.170 23 C 0.020 3.980 24 H 0.102 0.898 25 N -0.310 5.310 26 C -0.338 4.338 27 H 0.096 0.904 28 C -0.208 4.208 29 N -0.573 5.573 30 Si 0.747 3.253 31 H -0.212 1.212 32 H -0.216 1.216 33 H -0.213 1.213 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.228 0.772 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.068 0.932 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.517 20.652 -5.312 24.236 hybrid contribution 0.108 -0.896 0.099 0.908 sum 11.625 19.756 -5.213 23.508 Atomic orbital electron populations 1.20382 0.86881 1.03333 1.03255 1.22180 0.96863 0.90131 0.98624 1.77272 0.86496 1.22400 1.26105 1.46121 1.07247 1.04799 1.60648 0.72078 1.20904 0.97021 0.84854 1.01169 1.20506 0.92699 0.98632 1.03581 1.19754 0.90985 0.96195 1.16579 1.19116 0.98656 0.89833 0.93667 0.89945 1.21998 0.98644 1.03373 0.96881 1.21800 1.02483 0.93484 0.99779 1.20596 0.77526 0.90134 0.82342 1.90666 1.53346 1.60834 1.37015 1.46291 1.59069 1.10611 1.20539 1.22604 0.98513 0.78856 0.97867 0.89990 1.23299 1.02060 0.99373 0.93414 1.23683 0.88689 0.91316 0.91345 0.83128 1.23054 1.00969 0.98765 0.94896 1.22910 0.99266 0.97600 0.97217 1.23171 0.91702 0.87791 0.95336 0.89761 1.46440 1.75233 1.08296 1.01012 1.19016 1.36068 0.86540 0.92151 0.90385 1.24693 1.02439 0.98399 0.95240 1.69456 1.54821 1.33332 0.99644 0.86115 0.78498 0.83511 0.77174 1.21224 1.21619 1.21278 0.90209 0.89960 0.91010 0.90036 0.89164 0.91200 0.93269 0.90383 0.92823 0.89455 0.89039 0.77197 0.91751 0.92805 0.93709 0.92735 0.93050 0.93157 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 8.63 36.00 0.31 -0.36 16 2 C 0.09 0.94 7.06 -82.41 -0.58 0.36 16 3 N -0.30 -3.40 12.70 33.67 0.43 -2.97 16 4 N -0.48 -4.22 7.36 33.48 0.25 -3.98 16 5 H 0.44 2.46 8.96 -182.61 -1.64 0.82 16 6 C 0.09 0.78 7.21 -82.26 -0.59 0.19 16 7 C -0.10 -0.58 10.11 36.01 0.36 -0.21 16 8 C -0.22 -2.27 4.80 -105.05 -0.50 -2.78 16 9 C 0.01 0.08 2.19 -91.77 -0.20 -0.12 16 10 H 0.08 0.93 6.51 -51.92 -0.34 0.60 16 11 C -0.15 -1.70 8.75 37.16 0.33 -1.38 16 12 C -0.14 -1.38 5.02 -27.88 -0.14 -1.52 16 13 C 0.51 7.07 7.55 -10.98 -0.08 6.99 16 14 O -0.54 -9.53 13.74 5.56 0.08 -9.46 16 15 N -0.71 -9.98 3.68 -51.40 -0.19 -10.17 16 16 C 0.13 2.32 3.12 -65.43 -0.20 2.12 16 17 H 0.08 1.70 7.61 -51.93 -0.40 1.30 16 18 C -0.14 -2.64 6.20 -24.23 -0.15 -2.79 16 19 C 0.16 3.47 4.69 -62.80 -0.29 3.18 16 20 H 0.15 3.85 5.57 -51.93 -0.29 3.56 16 21 C -0.14 -2.60 6.44 -24.23 -0.16 -2.76 16 22 C -0.13 -2.34 6.32 -24.24 -0.15 -2.50 16 23 C 0.13 2.66 5.35 -62.80 -0.34 2.32 16 24 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 25 N -0.59 -14.55 2.98 -145.82 -0.44 -14.98 16 26 C -0.21 -5.76 10.59 -15.06 -0.16 -5.92 16 27 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 28 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 29 N -0.92 -26.12 10.48 55.49 0.58 -25.54 16 30 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 31 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 32 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 33 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 34 H 0.08 0.61 7.62 -51.93 -0.40 0.21 16 35 H 0.08 0.62 5.30 -51.93 -0.27 0.34 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.58 7.06 -51.93 -0.37 0.21 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 1.07 6.10 -51.93 -0.32 0.75 16 42 H 0.05 0.53 5.42 -51.93 -0.28 0.25 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.81 5.76 -51.93 -0.30 0.51 16 45 H 0.39 4.52 7.95 -40.82 -0.32 4.20 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.05 0.84 7.37 -51.93 -0.38 0.46 16 48 H 0.04 0.71 7.81 -51.93 -0.41 0.31 16 49 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.05 0.77 6.42 -51.93 -0.33 0.44 16 51 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 LS Contribution 396.23 15.07 5.97 5.97 Total: -1.00 -32.55 396.23 -10.39 -42.94 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -9.39 Total: 6.83 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.65 Total: -5.62 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.63 Total: -57.64 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.55 -10.39 -42.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109462191.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.962 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds