Wall clock time and date at job start Wed Apr 1 2020 03:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30836 * 125.90051 * 2 1 4 4 N 1.40082 * 108.20605 * 180.02562 * 3 2 1 5 5 H 0.96997 * 126.03771 * 179.97438 * 4 3 2 6 6 C 1.34946 * 107.92721 * 359.97438 * 4 3 2 7 7 C 1.50706 * 126.12715 * 180.02562 * 6 4 3 8 8 C 1.35318 * 107.74576 * 0.02562 * 6 4 3 9 9 C 1.50696 * 126.04030 * 180.02562 * 8 6 4 10 10 H 1.09010 * 109.47373 * 353.76548 * 9 8 6 11 11 C 1.52996 * 109.47222 * 233.76962 * 9 8 6 12 12 C 1.53002 * 109.47307 * 113.76694 * 9 8 6 13 13 C 1.50700 * 109.46952 * 186.65186 * 12 9 8 14 14 O 1.21282 * 120.00407 * 359.97438 * 13 12 9 15 15 N 1.34780 * 119.99774 * 180.02562 * 13 12 9 16 16 C 1.46501 * 119.99881 * 179.97438 * 15 13 12 17 17 H 1.08999 * 110.56113 * 34.11909 * 16 15 13 18 18 C 1.54857 * 110.62448 * 157.18795 * 16 15 13 19 19 C 1.55843 * 103.44423 * 118.49324 * 18 16 15 20 20 H 1.08994 * 115.56106 * 159.56609 * 19 18 16 21 21 C 1.55852 * 105.06538 * 288.17869 * 19 18 16 22 22 C 1.54848 * 103.44584 * 71.82155 * 21 19 18 23 23 C 1.55841 * 110.63055 * 271.21603 * 16 15 13 24 24 H 1.08998 * 115.55920 * 81.94530 * 23 16 15 25 25 N 1.50236 * 101.05028 * 32.93767 * 19 18 16 26 26 C 1.36937 * 130.83783 * 126.05564 * 25 19 18 27 27 H 1.08004 * 120.00260 * 179.97438 * 26 25 19 28 28 C 1.38815 * 119.99979 * 359.97060 * 26 25 19 29 29 N 1.31619 * 119.99885 * 0.02562 * 28 26 25 30 30 Si 1.86797 * 119.99977 * 180.02562 * 28 26 25 31 31 H 1.48496 * 109.47318 * 59.99505 * 30 28 26 32 32 H 1.48495 * 109.47292 * 180.02562 * 30 28 26 33 33 H 1.48509 * 109.47219 * 299.99854 * 30 28 26 34 34 H 1.08994 * 109.47287 * 95.27353 * 1 2 3 35 35 H 1.09005 * 109.47183 * 215.27704 * 1 2 3 36 36 H 1.08999 * 109.47353 * 335.27454 * 1 2 3 37 37 H 1.08992 * 109.47335 * 89.97898 * 7 6 4 38 38 H 1.09007 * 109.46478 * 209.97218 * 7 6 4 39 39 H 1.08992 * 109.47117 * 329.97030 * 7 6 4 40 40 H 1.08999 * 109.47633 * 59.99704 * 11 9 8 41 41 H 1.08998 * 109.47590 * 180.02562 * 11 9 8 42 42 H 1.09006 * 109.47318 * 299.99901 * 11 9 8 43 43 H 1.08993 * 109.47097 * 306.64808 * 12 9 8 44 44 H 1.08998 * 109.46966 * 66.65101 * 12 9 8 45 45 H 0.96997 * 119.99831 * 0.02562 * 15 13 12 46 46 H 1.08999 * 110.62984 * 236.98106 * 18 16 15 47 47 H 1.09006 * 110.62393 * 0.02562 * 18 16 15 48 48 H 1.09005 * 110.61944 * 313.33630 * 21 19 18 49 49 H 1.08992 * 110.76453 * 190.38102 * 21 19 18 50 50 H 1.09006 * 110.62608 * 241.51264 * 22 21 19 51 51 H 1.09001 * 110.76174 * 118.55819 * 22 21 19 52 52 H 0.97000 * 119.99897 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3908 1.2078 -0.0011 6 6 3.6142 -0.7154 -0.0004 7 6 4.8351 -1.5990 -0.0003 8 6 2.3271 -1.1331 -0.0002 9 6 1.8599 -2.5658 0.0006 10 1 2.7185 -3.2281 -0.1106 11 6 0.8913 -2.7870 -1.1629 12 6 1.1489 -2.8697 1.3208 13 6 0.8265 -4.3401 1.3908 14 8 1.1345 -5.0728 0.4748 15 7 0.1948 -4.8408 2.4711 16 6 -0.1191 -6.2702 2.5389 17 1 0.6570 -6.8563 2.0469 18 6 -0.2974 -6.7203 4.0098 19 6 -1.7733 -7.2181 4.0600 20 1 -2.0154 -7.8896 4.8838 21 6 -2.6400 -5.9260 3.9687 22 6 -2.4616 -5.4760 2.4979 23 6 -1.5115 -6.5574 1.9007 24 1 -1.5219 -6.6443 0.8142 25 7 -1.9373 -7.7733 2.6737 26 6 -2.3486 -9.0074 2.2461 27 1 -2.4033 -9.2223 1.1891 28 6 -2.6953 -9.9825 3.1713 29 7 -2.6291 -9.7206 4.4595 30 14 -3.2558 -11.6663 2.5882 31 1 -2.1756 -12.2981 1.7887 32 1 -3.5661 -12.5192 3.7634 33 1 -4.4720 -11.5198 1.7485 34 1 -0.3633 -0.0944 -1.0232 35 1 -0.3634 -0.8390 0.5935 36 1 -0.3634 0.9334 0.4298 37 1 5.1297 -1.8115 1.0273 38 1 4.6073 -2.5333 -0.5136 39 1 5.6509 -1.0914 -0.5147 40 1 1.3977 -2.5705 -2.1036 41 1 0.5530 -3.8231 -1.1622 42 1 0.0326 -2.1248 -1.0519 43 1 1.7983 -2.6001 2.1536 44 1 0.2262 -2.2922 1.3779 45 1 -0.0525 -4.2546 3.2032 46 1 0.3898 -7.5317 4.2492 47 1 -0.1527 -5.8798 4.6888 48 1 -2.2655 -5.1635 4.6517 49 1 -3.6865 -6.1471 4.1784 50 1 -1.9987 -4.4902 2.4514 51 1 -3.4183 -5.4746 1.9755 52 1 -2.8717 -10.4018 5.1060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109462191.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:40 Heat of formation + Delta-G solvation = 48.986011 kcal Electronic energy + Delta-G solvation = -31386.816104 eV Core-core repulsion = 27387.812179 eV Total energy + Delta-G solvation = -3999.003925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.38463 -41.38200 -39.84127 -36.27910 -35.30720 -34.20807 -34.14182 -31.55726 -30.96834 -30.72522 -29.64663 -28.97085 -28.08313 -27.61683 -26.03528 -23.64501 -22.68108 -21.69469 -21.06613 -21.01102 -20.11674 -19.93899 -18.90162 -17.98787 -17.78523 -16.83718 -16.72300 -16.50647 -16.03941 -15.98550 -15.63403 -15.39540 -14.67542 -14.48892 -14.40489 -14.23087 -13.97118 -13.79416 -13.66627 -13.45001 -13.42178 -13.35311 -13.13783 -13.05288 -12.87545 -12.77092 -12.73693 -12.55614 -12.34375 -12.18103 -12.01882 -11.99291 -11.85861 -11.79331 -11.50419 -11.14740 -11.11823 -10.98990 -10.72692 -10.52634 -10.14207 -9.85102 -9.26135 -8.81623 -7.77353 -5.15964 0.94601 1.47149 1.49369 1.55371 1.76080 1.86172 2.01918 2.37401 2.55036 3.36193 3.55724 3.74379 3.79687 3.90366 4.01036 4.12637 4.16943 4.21668 4.27991 4.31520 4.45681 4.49435 4.51392 4.57896 4.66594 4.67738 4.74035 4.77665 4.79035 4.82625 4.87167 4.94589 5.01158 5.02780 5.09229 5.13253 5.17694 5.20057 5.22008 5.32711 5.36972 5.38481 5.49884 5.51295 5.53599 5.62043 5.81972 5.86511 5.94105 6.29629 6.48988 6.79975 6.81144 7.08374 7.51428 7.72113 8.58611 9.29522 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.002279 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.922805 B =12281.819023 C =12507.506553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.082 3.918 3 N -0.332 5.332 4 N -0.474 5.474 5 H 0.448 0.552 6 C 0.095 3.905 7 C -0.095 4.095 8 C -0.242 4.242 9 C 0.014 3.986 10 H 0.071 0.929 11 C -0.148 4.148 12 C -0.124 4.124 13 C 0.508 3.492 14 O -0.580 6.580 15 N -0.702 5.702 16 C 0.148 3.852 17 H 0.051 0.949 18 C -0.127 4.127 19 C 0.140 3.860 20 H 0.116 0.884 21 C -0.126 4.126 22 C -0.115 4.115 23 C 0.119 3.881 24 H 0.066 0.934 25 N -0.619 5.619 26 C -0.224 4.224 27 H 0.070 0.930 28 C -0.064 4.064 29 N -0.944 5.944 30 Si 0.974 3.026 31 H -0.284 1.284 32 H -0.291 1.291 33 H -0.282 1.282 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.114 0.886 45 H 0.413 0.587 46 H 0.042 0.958 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.032 0.968 50 H 0.091 0.909 51 H 0.040 0.960 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.260 22.936 -4.219 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 N -0.156 5.156 4 N -0.184 5.184 5 H 0.294 0.706 6 C -0.035 4.035 7 C -0.153 4.153 8 C -0.253 4.253 9 C -0.006 4.006 10 H 0.090 0.910 11 C -0.205 4.205 12 C -0.163 4.163 13 C 0.297 3.703 14 O -0.460 6.460 15 N -0.355 5.355 16 C 0.041 3.959 17 H 0.069 0.931 18 C -0.166 4.166 19 C 0.034 3.966 20 H 0.134 0.866 21 C -0.165 4.165 22 C -0.155 4.155 23 C 0.011 3.989 24 H 0.084 0.916 25 N -0.340 5.340 26 C -0.353 4.353 27 H 0.088 0.912 28 C -0.257 4.257 29 N -0.594 5.594 30 Si 0.803 3.197 31 H -0.210 1.210 32 H -0.217 1.217 33 H -0.208 1.208 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.250 0.750 46 H 0.061 0.939 47 H 0.114 0.886 48 H 0.106 0.894 49 H 0.051 0.949 50 H 0.109 0.891 51 H 0.059 0.941 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.403 23.393 -4.823 26.913 hybrid contribution -0.083 -1.687 -0.128 1.694 sum 12.319 21.705 -4.952 25.444 Atomic orbital electron populations 1.20470 0.85731 1.04050 1.03780 1.22513 0.97801 0.90000 0.98127 1.77224 0.87577 1.23276 1.27480 1.46156 1.07122 1.05076 1.60013 0.70646 1.21309 0.97645 0.85075 0.99432 1.20598 0.92177 0.98017 1.04544 1.19717 0.91613 0.95633 1.18313 1.18978 0.98043 0.90082 0.93467 0.91042 1.21942 0.99403 1.01815 0.97381 1.21793 1.03907 0.90274 1.00349 1.21283 0.76286 0.91485 0.81269 1.90673 1.54643 1.62217 1.38464 1.46044 1.59159 1.08799 1.21490 1.21995 0.96017 0.81142 0.96774 0.93076 1.23125 0.98986 1.00094 0.94439 1.23603 0.91560 0.92191 0.89285 0.86640 1.22947 0.99179 0.98073 0.96340 1.22812 0.98319 0.98335 0.95988 1.23320 0.93792 0.87374 0.94433 0.91603 1.46708 1.75830 1.08548 1.02962 1.19262 1.35736 0.88303 0.92027 0.91181 1.25399 1.03350 1.01407 0.95531 1.69692 1.55769 1.33747 1.00175 0.85207 0.78031 0.79851 0.76569 1.21006 1.21698 1.20847 0.89803 0.88949 0.90499 0.88868 0.89681 0.89180 0.93518 0.93117 0.91439 0.87275 0.86848 0.74959 0.93894 0.88597 0.89432 0.94860 0.89070 0.94125 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 8.63 71.23 0.62 -0.54 16 2 C 0.08 1.55 7.06 43.10 0.30 1.85 16 3 N -0.33 -6.90 12.70 -47.39 -0.60 -7.50 16 4 N -0.47 -7.31 7.36 -48.00 -0.35 -7.66 16 5 H 0.45 4.09 8.96 -213.34 -1.91 2.17 16 6 C 0.09 1.45 7.21 41.41 0.30 1.75 16 7 C -0.10 -0.90 10.11 71.24 0.72 -0.18 16 8 C -0.24 -4.35 4.80 -20.14 -0.10 -4.45 16 9 C 0.01 0.27 2.19 -11.54 -0.03 0.25 16 10 H 0.07 1.53 6.51 -2.38 -0.02 1.51 16 11 C -0.15 -3.16 8.75 71.98 0.63 -2.53 16 12 C -0.12 -2.11 5.02 29.85 0.15 -1.96 16 13 C 0.51 13.03 7.55 87.66 0.66 13.69 16 14 O -0.58 -20.21 13.74 -3.04 -0.04 -20.26 16 15 N -0.70 -17.51 3.68 -434.91 -1.60 -19.11 16 16 C 0.15 5.26 3.12 46.61 0.15 5.41 16 17 H 0.05 2.15 7.61 -2.39 -0.02 2.13 16 18 C -0.13 -4.57 6.20 32.21 0.20 -4.37 16 19 C 0.14 6.19 4.69 46.23 0.22 6.41 16 20 H 0.12 6.05 5.57 -2.39 -0.01 6.04 16 21 C -0.13 -4.52 6.44 32.21 0.21 -4.31 16 22 C -0.12 -3.89 6.32 32.21 0.20 -3.69 16 23 C 0.12 4.88 5.35 46.23 0.25 5.13 16 24 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 25 N -0.62 -31.23 2.98 -615.25 -1.84 -33.06 16 26 C -0.22 -12.74 10.59 84.03 0.89 -11.85 16 27 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 28 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 29 N -0.94 -55.01 10.48 21.65 0.23 -54.78 16 30 Si 0.97 46.36 29.55 68.60 2.03 48.38 16 31 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 32 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 33 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 34 H 0.08 1.10 7.62 -2.39 -0.02 1.08 16 35 H 0.09 1.06 5.30 -2.38 -0.01 1.05 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.94 7.06 -2.38 -0.02 0.92 16 39 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 1.37 6.10 -2.39 -0.01 1.36 16 42 H 0.07 1.21 5.42 -2.38 -0.01 1.20 16 43 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.11 1.50 5.76 -2.39 -0.01 1.48 16 45 H 0.41 7.38 7.95 -92.71 -0.74 6.64 16 46 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.10 2.62 7.37 -2.38 -0.02 2.60 16 48 H 0.09 2.38 7.81 -2.38 -0.02 2.37 16 49 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.09 2.34 6.42 -2.38 -0.02 2.32 16 51 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -74.49 396.23 1.97 -72.52 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -1.68 Total: 24.02 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.83 Total: -2.55 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -4.17 Total: -122.13 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.04 Total: -20.26 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -74.49 1.97 -72.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109462191.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.509 kcal (2) G-P(sol) polarization free energy of solvation -74.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds