Wall clock time and date at job start Wed Apr 1 2020 03:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30832 * 125.90298 * 2 1 4 4 N 1.40087 * 108.20800 * 179.97438 * 3 2 1 5 5 H 0.97002 * 126.03237 * 180.02562 * 4 3 2 6 6 C 1.34942 * 107.92422 * 359.76050 * 4 3 2 7 7 C 1.50701 * 126.12702 * 180.24297 * 6 4 3 8 8 C 1.35318 * 107.74629 * 0.38490 * 6 4 3 9 9 C 1.50701 * 126.03999 * 179.87350 * 8 6 4 10 10 C 1.53010 * 109.47123 * 269.72041 * 9 8 6 11 11 H 1.09001 * 109.46750 * 305.00153 * 10 9 8 12 12 C 1.52993 * 109.46876 * 64.99975 * 10 9 8 13 13 C 1.50698 * 109.46836 * 185.00113 * 10 9 8 14 14 O 1.21274 * 120.00489 * 359.97438 * 13 10 9 15 15 N 1.34773 * 119.99697 * 180.02562 * 13 10 9 16 16 C 1.46504 * 120.00168 * 179.97438 * 15 13 10 17 17 H 1.09001 * 110.55430 * 36.80054 * 16 15 13 18 18 C 1.54847 * 110.62775 * 159.87772 * 16 15 13 19 19 C 1.55839 * 103.44827 * 118.49151 * 18 16 15 20 20 H 1.09004 * 116.12777 * 159.14638 * 19 18 16 21 21 C 1.55843 * 105.06294 * 288.17276 * 19 18 16 22 22 C 1.56688 * 103.60059 * 71.59035 * 21 19 18 23 23 C 1.55836 * 102.59711 * 0.33810 * 22 21 19 24 24 H 1.08997 * 115.56297 * 159.08230 * 23 22 21 25 25 N 1.50232 * 101.05112 * 32.93350 * 19 18 16 26 26 C 1.36934 * 130.83784 * 126.05532 * 25 19 18 27 27 H 1.08003 * 120.00434 * 346.48534 * 26 25 19 28 28 C 1.38814 * 120.00097 * 166.48755 * 26 25 19 29 29 N 1.31623 * 120.00356 * 159.14270 * 28 26 25 30 30 Si 1.86799 * 119.99777 * 339.13369 * 28 26 25 31 31 H 1.48497 * 109.47128 * 87.16376 * 30 28 26 32 32 H 1.48501 * 109.46988 * 207.16213 * 30 28 26 33 33 H 1.48500 * 109.47367 * 327.16143 * 30 28 26 34 34 H 1.08998 * 109.47102 * 270.02653 * 1 2 3 35 35 H 1.08998 * 109.46741 * 30.02110 * 1 2 3 36 36 H 1.08991 * 109.47312 * 150.02177 * 1 2 3 37 37 H 1.08997 * 109.47029 * 270.17112 * 7 6 4 38 38 H 1.08991 * 109.47108 * 30.17495 * 7 6 4 39 39 H 1.09002 * 109.47199 * 150.17484 * 7 6 4 40 40 H 1.08992 * 109.47201 * 29.71730 * 9 8 6 41 41 H 1.08996 * 109.47429 * 149.72109 * 9 8 6 42 42 H 1.09000 * 109.47283 * 299.99704 * 12 10 9 43 43 H 1.09000 * 109.47408 * 59.99964 * 12 10 9 44 44 H 1.09005 * 109.46772 * 179.97438 * 12 10 9 45 45 H 0.97000 * 120.00121 * 359.97438 * 15 13 10 46 46 H 1.09009 * 110.62470 * 236.97872 * 18 16 15 47 47 H 1.08996 * 110.63050 * 359.97438 * 18 16 15 48 48 H 1.09002 * 110.63014 * 190.31458 * 21 19 18 49 49 H 1.09005 * 110.62508 * 313.17381 * 21 19 18 50 50 H 1.08993 * 111.43816 * 241.93709 * 22 21 19 51 51 H 1.09005 * 110.61581 * 118.35456 * 22 21 19 52 52 H 0.97000 * 120.00113 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 1 4.3909 1.2079 0.0011 6 6 3.6142 -0.7154 0.0063 7 6 4.8350 -1.5990 0.0141 8 6 2.3271 -1.1331 0.0006 9 6 1.8598 -2.5658 0.0012 10 6 1.7024 -3.0516 -1.4411 11 1 1.0371 -2.3776 -1.9809 12 6 3.0711 -3.0725 -2.1244 13 6 1.1189 -4.4410 -1.4423 14 8 0.8555 -4.9890 -0.3930 15 7 0.8909 -5.0751 -2.6095 16 6 0.3242 -6.4261 -2.6107 17 1 -0.4102 -6.5338 -1.8125 18 6 -0.3083 -6.7511 -3.9863 19 6 0.5218 -7.9710 -4.4877 20 1 0.0520 -8.5895 -5.2525 21 6 1.9174 -7.3858 -4.8599 22 6 2.5585 -7.0499 -3.4702 23 6 1.4504 -7.4938 -2.4684 24 1 1.7875 -7.6890 -1.4504 25 7 0.8350 -8.6593 -3.1896 26 6 0.6247 -9.9513 -2.7876 27 1 -0.0262 -10.5958 -3.3598 28 6 1.2482 -10.4328 -1.6446 29 7 0.7624 -11.4873 -1.0245 30 14 2.7768 -9.5844 -0.9868 31 1 2.3776 -8.4811 -0.0766 32 1 3.6056 -10.5656 -0.2414 33 1 3.5626 -9.0320 -2.1193 34 1 -0.3633 0.0005 1.0276 35 1 -0.3633 0.8898 -0.5142 36 1 -0.3633 -0.8901 -0.5134 37 1 5.1345 -1.8139 -1.0116 38 1 5.6484 -1.0902 0.5312 39 1 4.6049 -2.5321 0.5284 40 1 2.5930 -3.1869 0.5157 41 1 0.9008 -2.6350 0.5146 42 1 3.4931 -2.0675 -2.1235 43 1 3.7364 -3.7464 -1.5847 44 1 2.9590 -3.4190 -3.1518 45 1 1.1020 -4.6370 -3.4488 46 1 -1.3580 -7.0218 -3.8719 47 1 -0.2008 -5.9070 -4.6674 48 1 2.5148 -8.1262 -5.3919 49 1 1.8074 -6.4813 -5.4580 50 1 2.7601 -5.9833 -3.3719 51 1 3.4690 -7.6295 -3.3174 52 1 1.1983 -11.8239 -0.2260 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110118884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:04 Heat of formation + Delta-G solvation = 76.990575 kcal Electronic energy + Delta-G solvation = -31956.134456 eV Core-core repulsion = 27958.344900 eV Total energy + Delta-G solvation = -3997.789556 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.68267 -40.25824 -38.70521 -35.19039 -33.98878 -33.68932 -32.39803 -31.35619 -29.64841 -29.40127 -28.82305 -27.98596 -27.82827 -25.85689 -24.21065 -23.31019 -21.57931 -20.46283 -20.30727 -19.61817 -19.24928 -18.90265 -17.49956 -17.11390 -16.86111 -15.95091 -15.78749 -15.29955 -15.22875 -14.56660 -14.14598 -13.96575 -13.87257 -13.62884 -13.53834 -13.27094 -13.18830 -12.88630 -12.76125 -12.52658 -12.48800 -12.35479 -12.24278 -12.09801 -11.97568 -11.82662 -11.38178 -11.32258 -11.18228 -11.09309 -10.94033 -10.86255 -10.61878 -10.48353 -10.21144 -9.75424 -9.60214 -9.47537 -9.40819 -9.24831 -8.90052 -8.54638 -8.46042 -7.17589 -5.89846 -3.17413 1.60543 2.46326 2.60162 2.90790 3.40548 3.46332 3.49520 3.53785 4.36752 4.44172 4.58988 4.67210 4.73706 4.81604 4.86849 4.88789 5.09455 5.13100 5.20228 5.21266 5.28527 5.37776 5.41287 5.42981 5.45949 5.51777 5.60659 5.64188 5.64895 5.68128 5.77130 5.81441 5.85903 5.86339 5.94287 5.99058 5.99428 6.12718 6.18342 6.24821 6.33706 6.44533 6.48594 6.51951 6.64737 6.74477 6.90222 6.97357 7.04061 7.43206 7.47021 7.80430 8.34548 8.53098 8.75027 9.68541 10.28095 11.26584 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.002923 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.828016 B = 9575.418410 C = 9988.519442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.085 3.915 3 N -0.299 5.299 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.092 3.908 7 C -0.099 4.099 8 C -0.227 4.227 9 C -0.022 4.022 10 C -0.103 4.103 11 H 0.093 0.907 12 C -0.146 4.146 13 C 0.510 3.490 14 O -0.536 6.536 15 N -0.716 5.716 16 C 0.130 3.870 17 H 0.089 0.911 18 C -0.133 4.133 19 C 0.139 3.861 20 H 0.097 0.903 21 C -0.131 4.131 22 C -0.141 4.141 23 C 0.112 3.888 24 H 0.099 0.901 25 N -0.603 5.603 26 C -0.229 4.229 27 H 0.097 0.903 28 C 0.020 3.980 29 N -0.912 5.912 30 Si 0.872 3.128 31 H -0.282 1.282 32 H -0.305 1.305 33 H -0.263 1.263 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.394 0.606 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.053 0.947 50 H 0.060 0.940 51 H 0.061 0.939 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.594 24.617 -3.792 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 N -0.122 5.122 4 N -0.188 5.188 5 H 0.279 0.721 6 C -0.037 4.037 7 C -0.158 4.158 8 C -0.238 4.238 9 C -0.061 4.061 10 C -0.125 4.125 11 H 0.111 0.889 12 C -0.203 4.203 13 C 0.295 3.705 14 O -0.412 6.412 15 N -0.367 5.367 16 C 0.024 3.976 17 H 0.107 0.893 18 C -0.173 4.173 19 C 0.032 3.968 20 H 0.115 0.885 21 C -0.171 4.171 22 C -0.180 4.180 23 C 0.004 3.996 24 H 0.116 0.884 25 N -0.325 5.325 26 C -0.356 4.356 27 H 0.114 0.886 28 C -0.178 4.178 29 N -0.556 5.556 30 Si 0.704 3.296 31 H -0.211 1.211 32 H -0.234 1.234 33 H -0.188 1.188 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.228 0.772 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.078 0.922 51 H 0.080 0.920 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.386 25.107 -2.846 25.836 hybrid contribution 1.554 0.092 0.084 1.559 sum 6.940 25.199 -2.763 26.282 Atomic orbital electron populations 1.20219 0.86727 1.03377 1.03219 1.22257 0.96950 0.90208 0.98727 1.77272 0.86484 1.22358 1.26126 1.46135 1.07255 1.04839 1.60541 0.72063 1.20880 0.97009 0.84781 1.00988 1.20636 0.92720 0.98700 1.03701 1.19714 0.91073 0.96261 1.16731 1.19672 1.02600 0.89401 0.94393 1.21294 0.98391 0.93941 0.98845 0.88866 1.21913 0.95650 1.02523 1.00211 1.20629 0.78247 0.87591 0.84005 1.90735 1.51382 1.67782 1.31283 1.46225 1.64953 1.17408 1.08132 1.22483 0.96700 0.79986 0.98394 0.89336 1.23145 1.00132 0.98700 0.95274 1.22958 0.93182 0.91263 0.89446 0.88545 1.23282 0.98474 0.99180 0.96127 1.23463 0.99029 0.99464 0.96060 1.23494 0.92485 0.87152 0.96423 0.88397 1.46778 1.70511 1.05833 1.09404 1.18616 1.22995 0.85056 1.08890 0.88579 1.24812 0.99196 0.96635 0.97139 1.69812 1.40003 1.26475 1.19329 0.87111 0.85782 0.77703 0.79011 1.21070 1.23360 1.18816 0.90367 0.90942 0.90181 0.89743 0.91249 0.89147 0.90684 0.90196 0.91521 0.91923 0.92324 0.77171 0.91104 0.91886 0.92287 0.92866 0.92153 0.91995 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.12 36.01 0.36 -0.28 16 2 C 0.09 0.91 7.22 -82.41 -0.59 0.32 16 3 N -0.30 -3.39 12.70 33.67 0.43 -2.96 16 4 N -0.48 -4.20 7.36 33.48 0.25 -3.96 16 5 H 0.44 2.47 8.96 -182.61 -1.64 0.83 16 6 C 0.09 0.81 6.26 -82.27 -0.52 0.29 16 7 C -0.10 -0.62 9.16 36.01 0.33 -0.29 16 8 C -0.23 -2.33 4.81 -105.05 -0.51 -2.84 16 9 C -0.02 -0.24 3.98 -27.88 -0.11 -0.35 16 10 C -0.10 -1.08 2.71 -91.77 -0.25 -1.33 16 11 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 12 C -0.15 -1.28 7.78 37.15 0.29 -0.99 16 13 C 0.51 7.46 7.15 -10.99 -0.08 7.39 16 14 O -0.54 -10.45 15.64 5.56 0.09 -10.36 16 15 N -0.72 -9.84 3.49 -51.40 -0.18 -10.02 16 16 C 0.13 2.32 3.08 -65.44 -0.20 2.12 16 17 H 0.09 1.83 7.69 -51.93 -0.40 1.43 16 18 C -0.13 -2.04 6.20 -24.24 -0.15 -2.19 16 19 C 0.14 2.49 5.48 -62.81 -0.34 2.14 16 20 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 21 C -0.13 -2.08 6.49 -23.22 -0.15 -2.23 16 22 C -0.14 -2.51 6.26 -23.23 -0.15 -2.65 16 23 C 0.11 2.40 3.42 -62.81 -0.22 2.19 16 24 H 0.10 2.45 3.68 -51.93 -0.19 2.26 16 25 N -0.60 -14.14 2.80 -145.83 -0.41 -14.55 16 26 C -0.23 -6.46 10.94 -15.06 -0.16 -6.62 16 27 H 0.10 2.84 8.06 -52.48 -0.42 2.42 16 28 C 0.02 0.60 5.49 -17.43 -0.10 0.51 16 29 N -0.91 -28.68 13.97 55.49 0.78 -27.91 16 30 Si 0.87 22.97 24.74 -169.99 -4.21 18.76 16 31 H -0.28 -7.58 6.36 56.52 0.36 -7.22 16 32 H -0.31 -8.19 7.11 56.52 0.40 -7.78 16 33 H -0.26 -6.52 5.02 56.52 0.28 -6.24 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.62 7.92 -51.93 -0.41 0.21 16 37 H 0.08 0.45 6.82 -51.93 -0.35 0.10 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.62 7.14 -51.93 -0.37 0.25 16 40 H 0.07 0.89 7.14 -51.93 -0.37 0.52 16 41 H 0.08 0.97 7.73 -51.93 -0.40 0.56 16 42 H 0.07 0.52 5.33 -51.93 -0.28 0.24 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.46 7.56 -51.93 -0.39 0.07 16 45 H 0.39 4.14 7.44 -40.82 -0.30 3.83 16 46 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 47 H 0.06 0.76 7.34 -51.93 -0.38 0.37 16 48 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.05 0.66 7.82 -51.93 -0.41 0.26 16 50 H 0.06 0.89 6.46 -51.93 -0.34 0.56 16 51 H 0.06 1.22 6.30 -51.93 -0.33 0.90 16 52 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -35.98 392.59 -9.54 -45.52 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -9.66 Total: 4.38 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.54 Total: -4.82 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.86 Total: -59.39 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.21 Total: 18.76 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.98 -9.54 -45.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110118884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.508 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds