Wall clock time and date at job start Wed Apr 1 2020 03:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30832 * 125.90298 * 2 1 4 4 N 1.40087 * 108.20800 * 179.97438 * 3 2 1 5 5 H 0.97002 * 126.03237 * 180.02562 * 4 3 2 6 6 C 1.34942 * 107.92422 * 359.76050 * 4 3 2 7 7 C 1.50701 * 126.12702 * 180.24297 * 6 4 3 8 8 C 1.35318 * 107.74629 * 0.38490 * 6 4 3 9 9 C 1.50701 * 126.03999 * 179.87350 * 8 6 4 10 10 C 1.53010 * 109.47123 * 269.72041 * 9 8 6 11 11 H 1.09001 * 109.46750 * 305.00153 * 10 9 8 12 12 C 1.52993 * 109.46876 * 64.99975 * 10 9 8 13 13 C 1.50698 * 109.46836 * 185.00113 * 10 9 8 14 14 O 1.21274 * 120.00489 * 359.97438 * 13 10 9 15 15 N 1.34773 * 119.99697 * 180.02562 * 13 10 9 16 16 C 1.46504 * 120.00168 * 179.97438 * 15 13 10 17 17 H 1.09001 * 110.55430 * 36.80054 * 16 15 13 18 18 C 1.54847 * 110.62775 * 159.87772 * 16 15 13 19 19 C 1.55839 * 103.44827 * 118.49151 * 18 16 15 20 20 H 1.09004 * 116.12777 * 159.14638 * 19 18 16 21 21 C 1.55843 * 105.06294 * 288.17276 * 19 18 16 22 22 C 1.56688 * 103.60059 * 71.59035 * 21 19 18 23 23 C 1.55836 * 102.59711 * 0.33810 * 22 21 19 24 24 H 1.08997 * 115.56297 * 159.08230 * 23 22 21 25 25 N 1.50232 * 101.05112 * 32.93350 * 19 18 16 26 26 C 1.36934 * 130.83784 * 126.05532 * 25 19 18 27 27 H 1.08003 * 120.00434 * 346.48534 * 26 25 19 28 28 C 1.38814 * 120.00097 * 166.48755 * 26 25 19 29 29 N 1.31623 * 120.00356 * 159.14270 * 28 26 25 30 30 Si 1.86799 * 119.99777 * 339.13369 * 28 26 25 31 31 H 1.48497 * 109.47128 * 87.16376 * 30 28 26 32 32 H 1.48501 * 109.46988 * 207.16213 * 30 28 26 33 33 H 1.48500 * 109.47367 * 327.16143 * 30 28 26 34 34 H 1.08998 * 109.47102 * 270.02653 * 1 2 3 35 35 H 1.08998 * 109.46741 * 30.02110 * 1 2 3 36 36 H 1.08991 * 109.47312 * 150.02177 * 1 2 3 37 37 H 1.08997 * 109.47029 * 270.17112 * 7 6 4 38 38 H 1.08991 * 109.47108 * 30.17495 * 7 6 4 39 39 H 1.09002 * 109.47199 * 150.17484 * 7 6 4 40 40 H 1.08992 * 109.47201 * 29.71730 * 9 8 6 41 41 H 1.08996 * 109.47429 * 149.72109 * 9 8 6 42 42 H 1.09000 * 109.47283 * 299.99704 * 12 10 9 43 43 H 1.09000 * 109.47408 * 59.99964 * 12 10 9 44 44 H 1.09005 * 109.46772 * 179.97438 * 12 10 9 45 45 H 0.97000 * 120.00121 * 359.97438 * 15 13 10 46 46 H 1.09009 * 110.62470 * 236.97872 * 18 16 15 47 47 H 1.08996 * 110.63050 * 359.97438 * 18 16 15 48 48 H 1.09002 * 110.63014 * 190.31458 * 21 19 18 49 49 H 1.09005 * 110.62508 * 313.17381 * 21 19 18 50 50 H 1.08993 * 111.43816 * 241.93709 * 22 21 19 51 51 H 1.09005 * 110.61581 * 118.35456 * 22 21 19 52 52 H 0.97000 * 120.00113 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 1 4.3909 1.2079 0.0011 6 6 3.6142 -0.7154 0.0063 7 6 4.8350 -1.5990 0.0141 8 6 2.3271 -1.1331 0.0006 9 6 1.8598 -2.5658 0.0012 10 6 1.7024 -3.0516 -1.4411 11 1 1.0371 -2.3776 -1.9809 12 6 3.0711 -3.0725 -2.1244 13 6 1.1189 -4.4410 -1.4423 14 8 0.8555 -4.9890 -0.3930 15 7 0.8909 -5.0751 -2.6095 16 6 0.3242 -6.4261 -2.6107 17 1 -0.4102 -6.5338 -1.8125 18 6 -0.3083 -6.7511 -3.9863 19 6 0.5218 -7.9710 -4.4877 20 1 0.0520 -8.5895 -5.2525 21 6 1.9174 -7.3858 -4.8599 22 6 2.5585 -7.0499 -3.4702 23 6 1.4504 -7.4938 -2.4684 24 1 1.7875 -7.6890 -1.4504 25 7 0.8350 -8.6593 -3.1896 26 6 0.6247 -9.9513 -2.7876 27 1 -0.0262 -10.5958 -3.3598 28 6 1.2482 -10.4328 -1.6446 29 7 0.7624 -11.4873 -1.0245 30 14 2.7768 -9.5844 -0.9868 31 1 2.3776 -8.4811 -0.0766 32 1 3.6056 -10.5656 -0.2414 33 1 3.5626 -9.0320 -2.1193 34 1 -0.3633 0.0005 1.0276 35 1 -0.3633 0.8898 -0.5142 36 1 -0.3633 -0.8901 -0.5134 37 1 5.1345 -1.8139 -1.0116 38 1 5.6484 -1.0902 0.5312 39 1 4.6049 -2.5321 0.5284 40 1 2.5930 -3.1869 0.5157 41 1 0.9008 -2.6350 0.5146 42 1 3.4931 -2.0675 -2.1235 43 1 3.7364 -3.7464 -1.5847 44 1 2.9590 -3.4190 -3.1518 45 1 1.1020 -4.6370 -3.4488 46 1 -1.3580 -7.0218 -3.8719 47 1 -0.2008 -5.9070 -4.6674 48 1 2.5148 -8.1262 -5.3919 49 1 1.8074 -6.4813 -5.4580 50 1 2.7601 -5.9833 -3.3719 51 1 3.4690 -7.6295 -3.3174 52 1 1.1983 -11.8239 -0.2260 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110118884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:03 Heat of formation + Delta-G solvation = 51.436238 kcal Electronic energy + Delta-G solvation = -31957.242575 eV Core-core repulsion = 27958.344900 eV Total energy + Delta-G solvation = -3998.897675 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.41394 -41.61145 -40.03176 -36.10396 -35.46067 -34.39766 -34.33880 -32.14048 -31.38205 -30.84585 -29.73304 -29.18275 -28.51031 -26.56529 -26.00822 -24.45195 -22.89002 -21.87811 -21.09837 -20.93098 -20.43636 -19.94810 -18.88820 -18.36784 -18.08448 -17.50332 -16.99247 -16.37809 -16.13713 -15.95227 -15.50803 -15.24986 -15.01775 -14.80389 -14.58989 -14.30282 -14.10140 -13.97098 -13.91516 -13.59309 -13.45224 -13.35236 -13.23410 -13.15752 -13.08442 -12.88033 -12.78450 -12.66261 -12.60260 -12.46304 -12.16181 -12.07864 -11.89482 -11.78949 -11.42033 -11.38973 -11.34786 -10.96288 -10.85696 -10.64858 -10.17543 -9.96171 -9.28785 -9.13843 -8.17160 -5.36704 0.90837 1.27307 1.30068 1.40500 1.69753 1.75131 1.98725 2.28541 2.41104 3.02008 3.23291 3.69286 3.75316 3.79357 3.85905 3.92824 4.02370 4.08002 4.08479 4.23891 4.27165 4.37093 4.45678 4.51102 4.53528 4.58063 4.61299 4.69077 4.72636 4.73735 4.79932 4.80298 4.93811 4.96418 4.99366 5.02329 5.06300 5.11451 5.16735 5.18187 5.28187 5.30508 5.33577 5.37026 5.42523 5.44069 5.62596 5.72142 5.76541 6.11335 6.46303 6.63363 6.70617 6.76262 7.42123 7.49622 8.24332 9.03672 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.002923 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.828016 B = 9575.418410 C = 9988.519442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.075 3.925 3 N -0.328 5.328 4 N -0.472 5.472 5 H 0.448 0.552 6 C 0.103 3.897 7 C -0.100 4.100 8 C -0.245 4.245 9 C -0.015 4.015 10 C -0.090 4.090 11 H 0.117 0.883 12 C -0.144 4.144 13 C 0.508 3.492 14 O -0.591 6.591 15 N -0.698 5.698 16 C 0.142 3.858 17 H 0.047 0.953 18 C -0.116 4.116 19 C 0.130 3.870 20 H 0.104 0.896 21 C -0.117 4.117 22 C -0.132 4.132 23 C 0.093 3.907 24 H 0.054 0.946 25 N -0.632 5.632 26 C -0.202 4.202 27 H 0.071 0.929 28 C -0.047 4.047 29 N -0.964 5.964 30 Si 0.933 3.067 31 H -0.300 1.300 32 H -0.317 1.317 33 H -0.238 1.238 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.417 0.583 46 H 0.065 0.935 47 H 0.117 0.883 48 H 0.053 0.947 49 H 0.108 0.892 50 H 0.097 0.903 51 H 0.040 0.960 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.205 28.515 -7.095 30.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 N -0.152 5.152 4 N -0.182 5.182 5 H 0.295 0.705 6 C -0.027 4.027 7 C -0.158 4.158 8 C -0.256 4.256 9 C -0.054 4.054 10 C -0.111 4.111 11 H 0.134 0.866 12 C -0.201 4.201 13 C 0.296 3.704 14 O -0.471 6.471 15 N -0.351 5.351 16 C 0.035 3.965 17 H 0.066 0.934 18 C -0.155 4.155 19 C 0.025 3.975 20 H 0.122 0.878 21 C -0.156 4.156 22 C -0.171 4.171 23 C -0.014 4.014 24 H 0.072 0.928 25 N -0.356 5.356 26 C -0.330 4.330 27 H 0.089 0.911 28 C -0.240 4.240 29 N -0.613 5.613 30 Si 0.766 3.234 31 H -0.230 1.230 32 H -0.246 1.246 33 H -0.162 1.162 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.256 0.744 46 H 0.084 0.916 47 H 0.135 0.865 48 H 0.072 0.928 49 H 0.126 0.874 50 H 0.115 0.885 51 H 0.058 0.942 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.029 29.112 -6.245 30.593 hybrid contribution 0.965 -1.045 1.098 1.797 sum 7.995 28.068 -5.147 29.635 Atomic orbital electron populations 1.20279 0.85766 1.03979 1.03554 1.22577 0.97855 0.90213 0.98440 1.77226 0.87574 1.23041 1.27396 1.46164 1.07101 1.05104 1.59789 0.70535 1.21209 0.97384 0.84958 0.99099 1.20742 0.92170 0.97975 1.04897 1.19655 0.91836 0.95513 1.18629 1.19516 1.01260 0.89969 0.94671 1.21271 0.99821 0.91010 0.98984 0.86560 1.21944 0.93946 1.03389 1.00815 1.21446 0.77023 0.88807 0.83172 1.90731 1.53562 1.69368 1.33443 1.45968 1.64258 1.15692 1.09193 1.22008 0.94596 0.81141 0.98805 0.93440 1.23078 0.99003 0.99239 0.94222 1.23354 0.95264 0.91557 0.87345 0.87789 1.23237 0.95895 1.01286 0.95197 1.23421 0.96576 1.01199 0.95952 1.23590 0.95109 0.87607 0.95136 0.92788 1.46951 1.71045 1.04803 1.12789 1.18618 1.20280 0.86848 1.07303 0.91147 1.25402 1.02193 0.97968 0.98452 1.69939 1.41731 1.29114 1.20517 0.86134 0.82987 0.75686 0.78630 1.23003 1.24615 1.16177 0.90204 0.90176 0.89664 0.88126 0.89252 0.89938 0.92074 0.92063 0.90096 0.92697 0.90328 0.74396 0.91640 0.86528 0.92763 0.87395 0.88485 0.94151 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.12 71.24 0.72 -0.48 16 2 C 0.08 1.50 7.22 43.10 0.31 1.81 16 3 N -0.33 -6.89 12.70 -47.38 -0.60 -7.50 16 4 N -0.47 -7.18 7.36 -48.00 -0.35 -7.53 16 5 H 0.45 3.95 8.96 -213.33 -1.91 2.04 16 6 C 0.10 1.56 6.26 41.41 0.26 1.82 16 7 C -0.10 -0.95 9.16 71.24 0.65 -0.30 16 8 C -0.25 -4.63 4.81 -20.14 -0.10 -4.72 16 9 C -0.02 -0.32 3.98 29.85 0.12 -0.20 16 10 C -0.09 -1.63 2.71 -11.54 -0.03 -1.66 16 11 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 12 C -0.14 -1.89 7.78 71.98 0.56 -1.34 16 13 C 0.51 13.96 7.15 87.66 0.63 14.59 16 14 O -0.59 -23.52 15.64 -3.01 -0.05 -23.57 16 15 N -0.70 -16.71 3.49 -434.93 -1.52 -18.22 16 16 C 0.14 4.79 3.08 46.60 0.14 4.94 16 17 H 0.05 2.00 7.69 -2.39 -0.02 1.99 16 18 C -0.12 -3.10 6.20 32.21 0.20 -2.90 16 19 C 0.13 4.22 5.48 46.23 0.25 4.48 16 20 H 0.10 3.22 8.14 -2.38 -0.02 3.21 16 21 C -0.12 -3.09 6.49 32.87 0.21 -2.87 16 22 C -0.13 -4.21 6.26 32.86 0.21 -4.01 16 23 C 0.09 3.88 3.42 46.22 0.16 4.03 16 24 H 0.05 2.77 3.68 -2.39 -0.01 2.76 16 25 N -0.63 -29.40 2.80 -615.29 -1.72 -31.12 16 26 C -0.20 -11.73 10.94 84.03 0.92 -10.81 16 27 H 0.07 4.34 8.06 -2.91 -0.02 4.32 16 28 C -0.05 -2.90 5.49 84.86 0.47 -2.44 16 29 N -0.96 -64.01 13.97 21.65 0.30 -63.71 16 30 Si 0.93 50.22 24.74 68.60 1.70 51.92 16 31 H -0.30 -16.82 6.36 99.48 0.63 -16.19 16 32 H -0.32 -17.32 7.11 99.48 0.71 -16.62 16 33 H -0.24 -11.58 5.02 99.48 0.50 -11.08 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.20 7.92 -2.39 -0.02 1.18 16 37 H 0.10 0.67 6.82 -2.39 -0.02 0.66 16 38 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 0.97 7.14 -2.39 -0.02 0.96 16 40 H 0.06 1.44 7.14 -2.39 -0.02 1.43 16 41 H 0.06 1.50 7.73 -2.39 -0.02 1.48 16 42 H 0.08 0.89 5.33 -2.39 -0.01 0.87 16 43 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 0.74 7.56 -2.38 -0.02 0.73 16 45 H 0.42 6.12 7.44 -92.71 -0.69 5.43 16 46 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 47 H 0.12 1.92 7.34 -2.39 -0.02 1.91 16 48 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 49 H 0.11 1.77 7.82 -2.38 -0.02 1.75 16 50 H 0.10 2.33 6.46 -2.39 -0.02 2.32 16 51 H 0.04 1.46 6.30 -2.38 -0.02 1.45 16 52 H 0.26 16.46 8.31 -92.71 -0.77 15.69 16 Total: -1.00 -86.50 392.59 1.51 -84.99 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -1.92 Total: 14.80 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 5.68 Total: -0.06 kcal Atomic # 7 Polarization: -124.19 SS G_CDS: -3.89 Total: -128.08 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 1.70 Total: 51.92 kcal Total: -86.50 1.51 -84.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110118884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.426 kcal (2) G-P(sol) polarization free energy of solvation -86.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds