Wall clock time and date at job start Wed Apr 1 2020 03:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30836 * 125.89887 * 2 1 4 4 N 1.40089 * 108.20097 * 180.25781 * 3 2 1 5 5 H 0.97003 * 126.03365 * 179.73787 * 4 3 2 6 6 C 1.34945 * 107.92818 * 359.71719 * 4 3 2 7 7 C 1.50693 * 126.12758 * 179.97438 * 6 4 3 8 8 C 1.35312 * 107.74299 * 0.02562 * 6 4 3 9 9 C 1.50701 * 126.03902 * 179.97438 * 8 6 4 10 10 H 1.09000 * 109.47341 * 6.89289 * 9 8 6 11 11 C 1.53001 * 109.47245 * 246.89024 * 9 8 6 12 12 C 1.53001 * 109.47217 * 126.89168 * 9 8 6 13 13 C 1.50703 * 109.47253 * 185.00264 * 12 9 8 14 14 O 1.21281 * 119.99704 * 359.97438 * 13 12 9 15 15 N 1.34778 * 119.99975 * 180.02562 * 13 12 9 16 16 C 1.46499 * 119.99808 * 180.02562 * 15 13 12 17 17 H 1.08998 * 110.55890 * 32.09369 * 16 15 13 18 18 C 1.54854 * 110.62490 * 269.01922 * 16 15 13 19 19 C 1.55839 * 103.44686 * 241.51369 * 18 16 15 20 20 H 1.08999 * 116.12905 * 159.14999 * 19 18 16 21 21 C 1.55844 * 105.06473 * 288.17264 * 19 18 16 22 22 C 1.54854 * 103.44232 * 71.82405 * 21 19 18 23 23 C 1.55843 * 103.44839 * 0.02562 * 22 21 19 24 24 H 1.08995 * 116.13294 * 159.14823 * 23 22 21 25 25 N 1.50233 * 101.05360 * 32.93835 * 19 18 16 26 26 C 1.36935 * 130.84177 * 126.00835 * 25 19 18 27 27 H 1.08008 * 120.00311 * 180.02562 * 26 25 19 28 28 C 1.38814 * 120.00103 * 0.03500 * 26 25 19 29 29 N 1.31618 * 119.99711 * 359.97438 * 28 26 25 30 30 Si 1.86793 * 120.00193 * 179.97438 * 28 26 25 31 31 H 1.48492 * 109.47339 * 59.99649 * 30 28 26 32 32 H 1.48506 * 109.47226 * 179.97438 * 30 28 26 33 33 H 1.48501 * 109.47109 * 299.99543 * 30 28 26 34 34 H 1.09004 * 109.46968 * 266.43624 * 1 2 3 35 35 H 1.09003 * 109.47051 * 26.42905 * 1 2 3 36 36 H 1.08991 * 109.47311 * 146.43258 * 1 2 3 37 37 H 1.09004 * 109.47180 * 270.02560 * 7 6 4 38 38 H 1.08995 * 109.47226 * 30.02666 * 7 6 4 39 39 H 1.09000 * 109.47286 * 150.03013 * 7 6 4 40 40 H 1.09000 * 109.47277 * 183.28025 * 11 9 8 41 41 H 1.08998 * 109.47321 * 303.28337 * 11 9 8 42 42 H 1.09007 * 109.47017 * 63.28359 * 11 9 8 43 43 H 1.09005 * 109.47050 * 305.00324 * 12 9 8 44 44 H 1.09005 * 109.47404 * 65.00157 * 12 9 8 45 45 H 0.96998 * 120.00040 * 359.97438 * 15 13 12 46 46 H 1.09005 * 110.62475 * 0.02562 * 18 16 15 47 47 H 1.08999 * 110.62912 * 123.02132 * 18 16 15 48 48 H 1.09000 * 110.62988 * 190.31107 * 21 19 18 49 49 H 1.08996 * 110.62539 * 313.17956 * 21 19 18 50 50 H 1.08999 * 110.62870 * 241.51193 * 22 21 19 51 51 H 1.09005 * 110.62582 * 118.48799 * 22 21 19 52 52 H 0.96999 * 120.00193 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0060 5 1 4.3909 1.2078 -0.0109 6 6 3.6142 -0.7155 -0.0032 7 6 4.8349 -1.5990 -0.0082 8 6 2.3272 -1.1330 0.0037 9 6 1.8599 -2.5657 0.0083 10 1 2.7177 -3.2273 0.1285 11 6 1.1570 -2.8772 -1.3146 12 6 0.8840 -2.7802 1.1670 13 6 0.5118 -4.2383 1.2471 14 8 0.9805 -5.0281 0.4549 15 7 -0.3427 -4.6645 2.1982 16 6 -0.7040 -6.0821 2.2763 17 1 0.1284 -6.7076 1.9541 18 6 -1.9676 -6.3704 1.4289 19 6 -2.9997 -6.8805 2.4791 20 1 -4.0492 -6.8144 2.1922 21 6 -2.5007 -8.3013 2.8804 22 6 -1.2371 -8.0130 3.7279 23 6 -1.1451 -6.4573 3.7238 24 1 -0.5583 -6.0090 4.5254 25 7 -2.5994 -6.0827 3.6875 26 6 -3.3338 -5.2653 4.5045 27 1 -2.8602 -4.7686 5.3385 28 6 -4.6871 -5.0750 4.2609 29 7 -5.2642 -5.6800 3.2444 30 14 -5.6891 -3.9605 5.3758 31 1 -5.1224 -2.5884 5.3429 32 1 -7.0971 -3.9254 4.9047 33 1 -5.6447 -4.4813 6.7658 34 1 -0.3633 -0.0639 1.0257 35 1 -0.3633 0.9203 -0.4574 36 1 -0.3633 -0.8562 -0.5682 37 1 5.1238 -1.8138 -1.0371 38 1 5.6538 -1.0903 0.5004 39 1 4.6102 -2.5322 0.5083 40 1 0.7680 -3.8951 -1.2885 41 1 0.3345 -2.1775 -1.4626 42 1 1.8680 -2.7810 -2.1352 43 1 1.3558 -2.4738 2.1007 44 1 -0.0137 -2.1846 1.0011 45 1 -0.7178 -4.0328 2.8315 46 1 -2.3251 -5.4587 0.9501 47 1 -1.7637 -7.1408 0.6852 48 1 -3.2528 -8.8185 3.4762 49 1 -2.2472 -8.8836 1.9946 50 1 -0.3543 -8.4514 3.2625 51 1 -1.3627 -8.3872 4.7440 52 1 -6.2097 -5.5468 3.0739 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110744563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:47 Heat of formation + Delta-G solvation = 44.984350 kcal Electronic energy + Delta-G solvation = -31479.706176 eV Core-core repulsion = 27480.528726 eV Total energy + Delta-G solvation = -3999.177450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.41211 -41.20943 -39.90830 -36.30208 -35.12466 -34.34820 -34.23211 -31.55645 -30.92711 -30.49636 -29.75238 -28.97843 -28.06207 -27.66882 -26.05168 -23.80135 -22.50771 -21.46178 -21.10465 -20.98103 -20.23419 -19.99066 -18.79473 -17.95489 -17.83007 -17.10991 -16.71485 -16.31532 -16.08838 -15.72830 -15.70205 -15.11796 -14.84093 -14.66589 -14.44678 -14.22584 -13.97770 -13.76803 -13.64088 -13.59119 -13.50870 -13.36940 -13.09384 -12.90117 -12.84784 -12.75698 -12.74060 -12.62386 -12.23825 -12.07177 -12.05022 -11.94272 -11.85819 -11.81830 -11.63633 -11.17552 -11.09325 -10.89414 -10.83165 -10.43722 -10.17113 -9.78649 -9.28558 -8.81637 -7.71367 -5.10787 0.92026 1.52326 1.53426 1.59274 1.73017 1.84366 1.99903 2.48128 2.54517 3.41966 3.50708 3.70586 3.77355 3.89193 4.05693 4.11047 4.14741 4.25932 4.28348 4.32987 4.46040 4.51191 4.51955 4.56205 4.63863 4.69933 4.72694 4.73957 4.76877 4.78919 4.84698 4.88732 4.96839 4.98730 5.07351 5.13185 5.15963 5.17420 5.23416 5.25477 5.32293 5.42898 5.46842 5.50151 5.57171 5.67903 5.78548 5.85274 5.95283 6.32483 6.47618 6.76779 6.80787 7.10627 7.46444 7.77524 8.63665 9.35680 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.002889 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.654086 B = 9689.418165 C =11080.971377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.080 3.920 3 N -0.332 5.332 4 N -0.473 5.473 5 H 0.448 0.552 6 C 0.098 3.902 7 C -0.094 4.094 8 C -0.245 4.245 9 C 0.019 3.981 10 H 0.080 0.920 11 C -0.146 4.146 12 C -0.130 4.130 13 C 0.511 3.489 14 O -0.576 6.576 15 N -0.709 5.709 16 C 0.141 3.859 17 H 0.086 0.914 18 C -0.131 4.131 19 C 0.139 3.861 20 H 0.114 0.886 21 C -0.133 4.133 22 C -0.119 4.119 23 C 0.126 3.874 24 H 0.101 0.899 25 N -0.609 5.609 26 C -0.213 4.213 27 H 0.085 0.915 28 C -0.066 4.066 29 N -0.948 5.948 30 Si 0.972 3.028 31 H -0.278 1.278 32 H -0.302 1.302 33 H -0.284 1.284 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.404 0.596 46 H 0.035 0.965 47 H 0.063 0.937 48 H 0.035 0.965 49 H 0.070 0.930 50 H 0.081 0.919 51 H 0.057 0.943 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.361 7.264 -5.776 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 N -0.156 5.156 4 N -0.183 5.183 5 H 0.295 0.705 6 C -0.032 4.032 7 C -0.152 4.152 8 C -0.256 4.256 9 C -0.001 4.001 10 H 0.098 0.902 11 C -0.203 4.203 12 C -0.170 4.170 13 C 0.299 3.701 14 O -0.457 6.457 15 N -0.358 5.358 16 C 0.034 3.966 17 H 0.104 0.896 18 C -0.171 4.171 19 C 0.033 3.967 20 H 0.131 0.869 21 C -0.172 4.172 22 C -0.159 4.159 23 C 0.019 3.981 24 H 0.119 0.881 25 N -0.331 5.331 26 C -0.342 4.342 27 H 0.102 0.898 28 C -0.259 4.259 29 N -0.598 5.598 30 Si 0.802 3.198 31 H -0.204 1.204 32 H -0.229 1.229 33 H -0.210 1.210 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.239 0.761 46 H 0.054 0.946 47 H 0.082 0.918 48 H 0.054 0.946 49 H 0.088 0.912 50 H 0.100 0.900 51 H 0.076 0.924 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 19.451 8.138 -6.213 21.981 hybrid contribution -0.957 0.295 0.756 1.255 sum 18.494 8.434 -5.456 21.046 Atomic orbital electron populations 1.20473 0.86278 1.03826 1.03833 1.22434 0.97518 0.90301 0.98339 1.77220 0.87703 1.23157 1.27522 1.46150 1.07021 1.05148 1.59934 0.70541 1.21331 0.97596 0.85047 0.99200 1.20612 0.91936 0.98071 1.04567 1.19753 0.91780 0.95675 1.18398 1.18958 0.97276 0.90227 0.93619 0.90198 1.21921 1.00252 1.01589 0.96507 1.21821 1.02069 0.91480 1.01654 1.21097 0.77735 0.91567 0.79673 1.90607 1.55704 1.57797 1.41552 1.46056 1.46025 1.10096 1.33646 1.22372 0.95428 0.81808 0.96947 0.89605 1.23281 0.96641 0.99534 0.97684 1.23578 0.98725 0.88485 0.85939 0.86870 1.22968 0.97054 0.98217 0.98985 1.22825 0.97588 0.95845 0.99602 1.23383 0.85950 0.94458 0.94346 0.88111 1.46687 1.04153 1.51909 1.30312 1.19306 0.90835 1.18167 1.05892 0.89757 1.25388 0.97731 1.02690 1.00063 1.69712 1.10344 1.48114 1.31600 0.85239 0.77371 0.79038 0.78178 1.20389 1.22884 1.21041 0.89539 0.90634 0.89605 0.88938 0.88948 0.89278 0.92599 0.92786 0.92806 0.87868 0.88100 0.76106 0.94626 0.91835 0.94564 0.91189 0.90043 0.92434 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 8.66 71.24 0.62 -1.09 16 2 C 0.08 1.85 7.04 43.10 0.30 2.15 16 3 N -0.33 -8.00 12.70 -47.38 -0.60 -8.61 16 4 N -0.47 -8.36 7.36 -48.01 -0.35 -8.71 16 5 H 0.45 4.90 8.96 -213.32 -1.91 2.98 16 6 C 0.10 1.69 7.21 41.40 0.30 1.99 16 7 C -0.09 -0.95 10.11 71.23 0.72 -0.23 16 8 C -0.24 -5.19 4.81 -20.14 -0.10 -5.29 16 9 C 0.02 0.42 2.18 -11.54 -0.03 0.40 16 10 H 0.08 1.78 6.57 -2.39 -0.02 1.76 16 11 C -0.15 -3.49 8.88 71.98 0.64 -2.85 16 12 C -0.13 -2.98 4.87 29.85 0.15 -2.84 16 13 C 0.51 15.18 7.52 87.66 0.66 15.84 16 14 O -0.58 -20.13 13.62 -3.03 -0.04 -20.17 16 15 N -0.71 -22.34 5.07 -434.81 -2.21 -24.54 16 16 C 0.14 4.90 2.80 46.63 0.13 5.03 16 17 H 0.09 2.91 7.23 -2.39 -0.02 2.90 16 18 C -0.13 -5.20 6.23 32.21 0.20 -5.00 16 19 C 0.14 6.29 4.72 46.23 0.22 6.51 16 20 H 0.11 6.10 5.52 -2.39 -0.01 6.08 16 21 C -0.13 -5.08 6.44 32.21 0.21 -4.87 16 22 C -0.12 -3.97 6.44 32.21 0.21 -3.76 16 23 C 0.13 4.55 5.06 46.25 0.23 4.79 16 24 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 25 N -0.61 -28.01 2.98 -615.23 -1.84 -29.85 16 26 C -0.21 -10.89 10.59 84.03 0.89 -10.00 16 27 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 28 C -0.07 -3.54 5.50 84.86 0.47 -3.08 16 29 N -0.95 -54.12 10.47 21.65 0.23 -53.90 16 30 Si 0.97 43.94 29.55 68.60 2.03 45.96 16 31 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 32 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 33 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 34 H 0.09 1.59 7.81 -2.38 -0.02 1.58 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.65 5.10 -2.39 -0.01 1.64 16 37 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.09 0.97 7.05 -2.39 -0.02 0.95 16 40 H 0.06 1.62 5.90 -2.39 -0.01 1.61 16 41 H 0.05 1.23 5.65 -2.39 -0.01 1.22 16 42 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 44 H 0.10 2.21 5.63 -2.38 -0.01 2.20 16 45 H 0.40 12.48 8.66 -92.71 -0.80 11.68 16 46 H 0.03 1.55 7.98 -2.38 -0.02 1.53 16 47 H 0.06 2.34 7.82 -2.39 -0.02 2.32 16 48 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.07 2.33 7.82 -2.39 -0.02 2.32 16 50 H 0.08 2.26 7.82 -2.39 -0.02 2.24 16 51 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 52 H 0.24 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -67.24 398.93 1.28 -65.96 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -1.75 Total: 36.15 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 5.82 Total: -2.30 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -4.77 Total: -125.61 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.04 Total: -20.17 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -67.24 1.28 -65.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110744563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.949 kcal (2) G-P(sol) polarization free energy of solvation -67.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds